© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8200.t1 |
| Gene name | |
| Location | scaffold_30:97880..100897 |
| Strand | - |
| Gene length (bp) | 3017 |
| Transcript length (bp) | 1662 |
| Coding sequence length (bp) | 1662 |
| Protein length (aa) | 554 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.3E-15 | 108 | 159 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.9E-15 | 191 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 43.82 | 26.20 | 61.44 |
| 5d_25C | Five days - 25 degrees Celsius | 49.05 | 29.48 | 68.63 |
| 7d_25C | Seven days - 25 degrees Celsius | 55.35 | 33.62 | 77.09 |
| 10d_25C | Ten days - 25 degrees Celsius | 84.08 | 51.34 | 116.82 |
| 7d_15C | Seven days - 15 degrees Celsius | 53.77 | 32.62 | 74.93 |
| 7d_30C | Seven days - 30 degrees Celsius | 55.71 | 33.86 | 77.56 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.701242 | no |
| 3d_25C | 7d_25C | 0.338937 | no |
| 3d_25C | 7d_15C | 0.417860 | no |
| 3d_25C | 7d_30C | 0.321716 | no |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.670432 | no |
| 5d_25C | 7d_15C | 0.761103 | no |
| 5d_25C | 7d_30C | 0.650749 | no |
| 5d_25C | 10d_25C | 0.007091 | yes |
| 7d_25C | 7d_15C | 0.931822 | no |
| 7d_25C | 7d_30C | 0.986483 | no |
| 7d_25C | 10d_25C | 0.045756 | yes |
| 7d_15C | 7d_30C | 0.915574 | no |
| 7d_15C | 10d_25C | 0.029770 | yes |
| 7d_30C | 10d_25C | 0.050137 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8200.t1 MADPEDGDDLFADLYDADDSTNRTTAVEAPKPTDLGATNLATTGDSAQDFRPDPVGTYESHPSQPSEFDPGYHNG SGNAYGAPATSQAPPPAETESHGTGIKEDGKMFIGGLNWETTDESLRDYFSQFGEVQECTVMRDSATGRSRGFGF LTFRDAKTVNTVMVKEHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVVDATLMMDKD TGRPRGFGFVTFDGDAAVEKALSRPLEILGKPIEVKKAQPRGNLRDNNDQRGGHRNGGYRDQNQNDGGQQQAPQQ GQGSSMTPQMMAQYWQRMQQYFTMMQHQMAGQGGMPGMNMGAMNMNPAMMAQMQQVQQMQMRQQQQQQMGAQQGA MSPGPQSPGSQQAMPNMMNPAMMQPNQAVAAGGPASDSASPVPNAVAMAANYNNGTPNSARGQTGPGYNATEQIA FEQQKYEQQQISRSMDPRGFSPYQQQGGPTSWEGMYDEVPQPHVPTGPAGMRRMGSSGSGTTPQPQSTAPANAPT GPRNAGKPGANYRGGGRGGHRTFHPYQR* |
| Coding | >Pro_DTO377G3_2|g8200.t1 ATGGCTGACCCTGAGGATGGAGATGATCTCTTCGCTGATCTCTACGACGCTGATGATTCCACCAATCGTACCACT GCAGTCGAGGCGCCCAAGCCTACTGATCTAGGCGCGACCAACTTGGCTACCACTGGAGACTCTGCTCAGGATTTC AGACCTGACCCTGTTGGCACATACGAATCGCACCCTAGTCAGCCTTCGGAATTTGACCCGGGTTACCACAATGGT TCTGGAAATGCTTATGGTGCCCCTGCCACTAGCCAGGCACCCCCTCCTGCCGAGACCGAGTCTCACGGAACAGGA ATTAAAGAAGACGGAAAGATGTTCATCGGTGGTCTGAACTGGGAAACTACAGACGAATCCCTCCGTGACTACTTC TCTCAGTTCGGTGAGGTGCAAGAGTGCACTGTCATGCGAGATAGCGCCACTGGACGCTCTCGTGGCTTTGGATTT TTGACTTTCCGCGACGCTAAGACTGTCAATACCGTGATGGTGAAGGAGCATTATCTGGATGGAAAGATTATCGAT CCTAAGCGTGCTATTCCTCGTGACGAACAGGAGAAGACTTCCAAGATTTTCGTTGGTGGTGTTAGCCAGGAGGCT ACCGAGCAGGACTTTAAGCAATTCTTCATGCAGTTTGGCCGTGTTGTGGATGCCACTCTTATGATGGACAAGGAC ACCGGACGGCCCCGTGGATTCGGTTTCGTCACCTTCGACGGCGATGCTGCCGTTGAGAAGGCTCTCTCCCGTCCT CTTGAGATTCTGGGCAAGCCAATTGAGGTCAAGAAGGCCCAGCCCCGTGGCAACCTGCGTGACAACAATGATCAA CGCGGAGGCCACCGCAACGGAGGATACCGCGACCAAAACCAGAACGATGGAGGTCAGCAGCAAGCCCCTCAGCAG GGACAGGGTAGTTCGATGACTCCTCAAATGATGGCCCAATACTGGCAACGCATGCAGCAGTACTTTACCATGATG CAGCATCAGATGGCCGGTCAGGGAGGAATGCCTGGTATGAACATGGGCGCTATGAACATGAACCCCGCTATGATG GCCCAGATGCAACAAGTGCAGCAGATGCAGATGCGTCAGCAGCAGCAACAGCAAATGGGTGCCCAGCAAGGTGCT ATGAGCCCCGGCCCTCAGAGTCCTGGCTCCCAGCAGGCTATGCCCAACATGATGAACCCGGCCATGATGCAGCCC AACCAAGCCGTTGCTGCCGGCGGTCCTGCCAGCGATTCCGCTAGCCCTGTCCCCAATGCCGTTGCCATGGCCGCT AACTACAACAACGGAACTCCAAACTCAGCCAGAGGACAGACTGGACCTGGATACAACGCGACCGAGCAGATCGCC TTCGAGCAGCAGAAGTATGAACAGCAGCAGATCAGCCGCTCGATGGATCCTCGCGGCTTCTCGCCTTACCAGCAG CAGGGTGGCCCAACCTCGTGGGAGGGTATGTACGATGAAGTTCCTCAACCTCACGTTCCGACTGGACCAGCAGGT ATGAGACGCATGGGAAGTTCGGGTAGTGGAACCACTCCTCAGCCCCAGAGCACTGCTCCCGCCAATGCTCCCACT GGACCCCGCAACGCCGGCAAGCCTGGTGCGAACTACCGTGGCGGCGGCCGAGGTGGACACCGTACCTTCCACCCT TACCAGCGCTAA |
| Transcript | >Pro_DTO377G3_2|g8200.t1 ATGGCTGACCCTGAGGATGGAGATGATCTCTTCGCTGATCTCTACGACGCTGATGATTCCACCAATCGTACCACT GCAGTCGAGGCGCCCAAGCCTACTGATCTAGGCGCGACCAACTTGGCTACCACTGGAGACTCTGCTCAGGATTTC AGACCTGACCCTGTTGGCACATACGAATCGCACCCTAGTCAGCCTTCGGAATTTGACCCGGGTTACCACAATGGT TCTGGAAATGCTTATGGTGCCCCTGCCACTAGCCAGGCACCCCCTCCTGCCGAGACCGAGTCTCACGGAACAGGA ATTAAAGAAGACGGAAAGATGTTCATCGGTGGTCTGAACTGGGAAACTACAGACGAATCCCTCCGTGACTACTTC TCTCAGTTCGGTGAGGTGCAAGAGTGCACTGTCATGCGAGATAGCGCCACTGGACGCTCTCGTGGCTTTGGATTT TTGACTTTCCGCGACGCTAAGACTGTCAATACCGTGATGGTGAAGGAGCATTATCTGGATGGAAAGATTATCGAT CCTAAGCGTGCTATTCCTCGTGACGAACAGGAGAAGACTTCCAAGATTTTCGTTGGTGGTGTTAGCCAGGAGGCT ACCGAGCAGGACTTTAAGCAATTCTTCATGCAGTTTGGCCGTGTTGTGGATGCCACTCTTATGATGGACAAGGAC ACCGGACGGCCCCGTGGATTCGGTTTCGTCACCTTCGACGGCGATGCTGCCGTTGAGAAGGCTCTCTCCCGTCCT CTTGAGATTCTGGGCAAGCCAATTGAGGTCAAGAAGGCCCAGCCCCGTGGCAACCTGCGTGACAACAATGATCAA CGCGGAGGCCACCGCAACGGAGGATACCGCGACCAAAACCAGAACGATGGAGGTCAGCAGCAAGCCCCTCAGCAG GGACAGGGTAGTTCGATGACTCCTCAAATGATGGCCCAATACTGGCAACGCATGCAGCAGTACTTTACCATGATG CAGCATCAGATGGCCGGTCAGGGAGGAATGCCTGGTATGAACATGGGCGCTATGAACATGAACCCCGCTATGATG GCCCAGATGCAACAAGTGCAGCAGATGCAGATGCGTCAGCAGCAGCAACAGCAAATGGGTGCCCAGCAAGGTGCT ATGAGCCCCGGCCCTCAGAGTCCTGGCTCCCAGCAGGCTATGCCCAACATGATGAACCCGGCCATGATGCAGCCC AACCAAGCCGTTGCTGCCGGCGGTCCTGCCAGCGATTCCGCTAGCCCTGTCCCCAATGCCGTTGCCATGGCCGCT AACTACAACAACGGAACTCCAAACTCAGCCAGAGGACAGACTGGACCTGGATACAACGCGACCGAGCAGATCGCC TTCGAGCAGCAGAAGTATGAACAGCAGCAGATCAGCCGCTCGATGGATCCTCGCGGCTTCTCGCCTTACCAGCAG CAGGGTGGCCCAACCTCGTGGGAGGGTATGTACGATGAAGTTCCTCAACCTCACGTTCCGACTGGACCAGCAGGT ATGAGACGCATGGGAAGTTCGGGTAGTGGAACCACTCCTCAGCCCCAGAGCACTGCTCCCGCCAATGCTCCCACT GGACCCCGCAACGCCGGCAAGCCTGGTGCGAACTACCGTGGCGGCGGCCGAGGTGGACACCGTACCTTCCACCCT TACCAGCGCTAA |
| Gene | >Pro_DTO377G3_2|g8200.t1 ATGGCTGACCCTGAGGATGGAGATGATCTCTTCGCTGATCTGTATGTTTTCTACTTCACTTTACCTTGAATAATG AAATTCTAATCAGGCTTCTTTCATAGCTACGACGCTGATGATTCCACCAATCGTACCACTGCAGTCGAGGCGCCC AAGCCTACTGATCTAGGCGCGACCAACTTGGCTACCACTGGAGACTCTGCTCAGGATTTCAGACCTGACCCTGTT GGCACATACGAATCGCACCCTAGTCAGCCTTCGGAATTTGACCCGGGTTACCACAATGGTTCTGGAAATGCTTAT GGTGCCCCTGCCACTAGCCAGGCACCCCCTCCTGCCGAGACCGAGTCTCACGGAACAGGAATTAAAGAAGACGGG TAAGTCCACTAATTGCGTTTCTTTTGCATTTTCATGTTCGAACTCTACCCCAACTGCATGTATCCGTCTGGTTTT GGGCTTTACCTCGTCAGTACAGGCCTGGGTCGCGCAATTGCTATTCATGGGTTAAGTCTGGGTGCCGGAAGGAGT CTCCTATCTGCGGGTTAAAATCTCTCTGGGATGTGGGCTGTTGGCTGTTTGAGGAAAAGTCCACCGGTTGGTTGA CGGCGCACGCGTTTTCAACCTTGGAAATGAGGGAGAACAAACTGCGGGCTCGGCGACCATCAAGACGTCTGTTCG AGGGACCCATTCGCACAACCACCAACGTCTACCAAGGGTGATCTACAGATCATATTGGGAGTGCTCCAGCATTTG CTACACGGAATCAAGCAGAGGCTCGAAAGAAATATCGCCTGGGACCCTTGATCAAGACAATTTCTTGCGTGAATC AACCACACCCCAACCATGGACCTTTGTCACAAACGATTCATATATAGTACAGCCGATACTATATAGTTTCCTGTC GATATACCTTGATAGGGCAGAGCAAGAAGTAGCTATCTAGCTTGAGACTCTGTGTTAGACAAGGCAAAGGTTTTC ACGAGTCAGACAGACAGACAGTGACAATTCACTTTTTACGACTGAAATACTTGCACCTCCTCGCTTCTCATCTCG CCTGTCTCCGGCTTGAGAAATCCAGAAAGAGAAGGACATGAATTCTGCATCCAGGCCCATGTAAACCAGTGGGCT TGACGTTAAATCCCTGTCATGAACATCAAAATTGCTCAAGACCATACAAGTATACATTGACAGTGACTACGAGGC ACAAAGATCACGTACCGGCCAAGCACGTGCGCTGCTTGTTCCAGGGCCGTTGTGCCCAGAATAGCGAGGCTTTTC GTGCACTCGAATAGCCCATGAATAGCACTACCTCCCCTTACCTTTTCACGTTCATTTACTTCCTTTACCCTACCA CATTACATCCTGTCGTTCGCCGATCATAATTGGTCCGGACATTTGCTCTTTCATTTTCATGAACAGTCGCTAACC GAGGACAACACGTGGTTAGAAAGATGTTCATCGGTGGTCTGAACTGGGAAACTACAGACGGTAAATCTATCTTTC TTACACGGTAAATGTATCATATAGCTGACATATCTTGAACTTCATTTAGAATCCCTCCGTGACTACTTCTCTCAG TTCGGTGAGGTGCAAGAGTGCACTGTCATGCGAGATAGCGCCACTGGACGCTCTCGTGGCTTTGGATTTTTGACT TTCCGCGACGCTAAGACTGTCAATACCGTGATGGTGAAGGAGCATTATCTGGATGGAAAGATTGTAAGCATCACC TCGCAATTGGGACAAACAAAGTGAACTGTTACTGACCACATCAAAGATCGATCCTAAGCGTGCTATTCCTCGTGA CGAACAGGAGAAGACTTCCAAGATTTTCGTTGGTGGTGTTAGCCAGGAGGCTACCGAGCAGGACTTTAAGCAATT CTTCATGCAGTTTGGCCGTGTTGTGGATGCCACTCTTATGATGGACAAGGACACCGGACGGCCCCGTGGATTCGG TTTCGTCACCTTCGACGGCGATGCTGCCGTTGAGAAGGCTCTCTCCCGTCCTCTTGAGATTCTGGGCAAGCCAAT TGAGGTCAAGAAGGCCCAGCCCCGTGGCAACCTGCGTGACAACAATGATCAACGCGGAGGCCACCGCAACGGAGG ATACCGCGACCAAAACCAGAACGATGGAGGTCAGCAGCAAGCCCCTCAGCAGGGACAGGGTAGTTCGATGACTCC TCAAATGATGGCCCAATACTGGCAACGCATGCAGCAGTACTTTACCATGATGCAGCATCAGATGGCCGGTCAGGG AGGAATGCCTGGTATGAACATGGGCGCTATGAACATGAACCCCGCTATGATGGCCCAGATGCAACAAGTGCAGCA GATGCAGATGCGTCAGCAGCAGCAACAGCAAATGGGTGCCCAGCAAGGTGCTATGAGCCCCGGCCCTCAGAGTCC TGGCTCCCAGCAGGCTATGCCCAACATGATGAACCCGGCCATGATGCAGCCCAACCAAGCCGTTGCTGCCGGCGG TCCTGCCAGCGATTCCGCTAGCCCTGTCCCCAATGCCGTTGCCATGGCCGCTAACTACAACAACGGAACTCCAAA CTCAGCCAGAGGACAGACTGGACCTGGATACAACGCGACCGAGCAGATCGCCTTCGAGCAGCAGAAGTATGAACA GCAGCAGATCAGCCGCTCGATGGATCCTCGCGGCTTCTCGCCTTACCAGCAGCAGGGTGGCCCAACCTCGTGGGA GGGTATGTACGATGAAGTTCCTCAACCTCACGTTCCGACTGGACCAGCAGGTATGAGACGCATGGGAAGTTCGGG TAGTGGTATGTGATTCTTACGAGTCTTTGCATATTGTGTCCCTTTCATCTCAATTCCTTTCCATTCCTACTTTAT TTGCGCACATCAACTAACCCGTCTCTCAAACAGGAACCACTCCTCAGCCCCAGAGCACTGCTCCCGCCAATGCTC CCACTGGACCCCGCAACGCCGGCAAGCCTGGTGCGAACTACCGTGGCGGCGGCCGAGGTGGACACCGTACCTTCC ACCCTTACCAGCGCTAA |