© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8187.t1 |
| Gene name | |
| Location | scaffold_30:69137..69608 |
| Strand | - |
| Gene length (bp) | 471 |
| Transcript length (bp) | 471 |
| Coding sequence length (bp) | 471 |
| Protein length (aa) | 157 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 16.48 | 4.44 | 28.52 |
| 5d_25C | Five days - 25 degrees Celsius | 26.99 | 8.61 | 45.36 |
| 7d_25C | Seven days - 25 degrees Celsius | 20.44 | 5.46 | 35.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 19.33 | 5.37 | 33.30 |
| 7d_15C | Seven days - 15 degrees Celsius | 19.43 | 5.19 | 33.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 26.48 | 8.46 | 44.51 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.241375 | no |
| 3d_25C | 7d_25C | 0.683183 | no |
| 3d_25C | 7d_15C | 0.769860 | no |
| 3d_25C | 7d_30C | 0.265482 | no |
| 3d_25C | 10d_25C | 0.777314 | no |
| 5d_25C | 7d_25C | 0.565489 | no |
| 5d_25C | 7d_15C | 0.484731 | no |
| 5d_25C | 7d_30C | 0.976410 | no |
| 5d_25C | 10d_25C | 0.479442 | no |
| 7d_25C | 7d_15C | 0.938533 | no |
| 7d_25C | 7d_30C | 0.599335 | no |
| 7d_25C | 10d_25C | 0.932718 | no |
| 7d_15C | 7d_30C | 0.512424 | no |
| 7d_15C | 10d_25C | 0.993676 | no |
| 7d_30C | 10d_25C | 0.504930 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8187.t1 MPSMHPLSLLTAILASALAESSSSSCWDTMHNSTLAVFSSAPIAFSLDRATALQCQAWCGQVSNCQAWVFVDQLL QCDLHRAAPVNVLPETNGFVFGGCDPSGAVLDLPRLIYAETMVEGAASTPTTQASAISLASSSSGATPEKTHGVP ESVCLC* |
| Coding | >Pro_DTO377G3_2|g8187.t1 ATGCCTTCCATGCACCCCCTTTCCCTCCTCACCGCCATCTTGGCCTCGGCGCTGGCCGAGTCCTCTTCGTCCTCC TGCTGGGACACCATGCACAACTCGACCCTCGCGGTCTTCAGCAGCGCCCCTATCGCCTTCAGTCTCGACCGTGCT ACCGCGTTGCAGTGCCAAGCGTGGTGCGGGCAAGTCTCCAACTGCCAGGCATGGGTGTTTGTCGACCAATTGCTG CAATGCGACCTCCACCGCGCGGCCCCGGTGAACGTTCTTCCCGAGACCAACGGATTCGTCTTCGGTGGCTGTGAC CCTTCCGGCGCGGTCCTGGATTTGCCAAGACTAATATACGCCGAGACTATGGTCGAGGGCGCAGCCTCGACTCCC ACTACCCAGGCTAGTGCGATTTCACTCGCCAGCAGCTCGAGTGGTGCTACCCCGGAGAAGACTCACGGGGTGCCC GAGTCGGTATGTCTCTGTTAG |
| Transcript | >Pro_DTO377G3_2|g8187.t1 ATGCCTTCCATGCACCCCCTTTCCCTCCTCACCGCCATCTTGGCCTCGGCGCTGGCCGAGTCCTCTTCGTCCTCC TGCTGGGACACCATGCACAACTCGACCCTCGCGGTCTTCAGCAGCGCCCCTATCGCCTTCAGTCTCGACCGTGCT ACCGCGTTGCAGTGCCAAGCGTGGTGCGGGCAAGTCTCCAACTGCCAGGCATGGGTGTTTGTCGACCAATTGCTG CAATGCGACCTCCACCGCGCGGCCCCGGTGAACGTTCTTCCCGAGACCAACGGATTCGTCTTCGGTGGCTGTGAC CCTTCCGGCGCGGTCCTGGATTTGCCAAGACTAATATACGCCGAGACTATGGTCGAGGGCGCAGCCTCGACTCCC ACTACCCAGGCTAGTGCGATTTCACTCGCCAGCAGCTCGAGTGGTGCTACCCCGGAGAAGACTCACGGGGTGCCC GAGTCGGTATGTCTCTGTTAG |
| Gene | >Pro_DTO377G3_2|g8187.t1 ATGCCTTCCATGCACCCCCTTTCCCTCCTCACCGCCATCTTGGCCTCGGCGCTGGCCGAGTCCTCTTCGTCCTCC TGCTGGGACACCATGCACAACTCGACCCTCGCGGTCTTCAGCAGCGCCCCTATCGCCTTCAGTCTCGACCGTGCT ACCGCGTTGCAGTGCCAAGCGTGGTGCGGGCAAGTCTCCAACTGCCAGGCATGGGTGTTTGTCGACCAATTGCTG CAATGCGACCTCCACCGCGCGGCCCCGGTGAACGTTCTTCCCGAGACCAACGGATTCGTCTTCGGTGGCTGTGAC CCTTCCGGCGCGGTCCTGGATTTGCCAAGACTAATATACGCCGAGACTATGGTCGAGGGCGCAGCCTCGACTCCC ACTACCCAGGCTAGTGCGATTTCACTCGCCAGCAGCTCGAGTGGTGCTACCCCGGAGAAGACTCACGGGGTGCCC GAGTCGGTATGTCTCTGTTAG |