© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8183.t1 |
| Gene name | |
| Location | scaffold_30:55449..57186 |
| Strand | + |
| Gene length (bp) | 1737 |
| Transcript length (bp) | 1737 |
| Coding sequence length (bp) | 1737 |
| Protein length (aa) | 579 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00128 | Alpha-amylase | Alpha amylase, catalytic domain | 2.7E-118 | 33 | 393 |
| PF16657 | Malt_amylase_C | Maltogenic Amylase, C-terminal domain | 5.7E-07 | 506 | 561 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.41 | 1.41 | 7.42 |
| 5d_25C | Five days - 25 degrees Celsius | 0.77 | 0.01 | 1.54 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.65 | 0.00 | 1.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.27 | 0.00 | 0.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.70 | 0.00 | 1.53 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.80 | 2.38 | 11.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.002297 | yes |
| 3d_25C | 7d_15C | 0.004045 | yes |
| 3d_25C | 7d_30C | 0.291547 | no |
| 3d_25C | 10d_25C | 0.006371 | yes |
| 5d_25C | 7d_25C | 0.846437 | no |
| 5d_25C | 7d_15C | 0.921505 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.190760 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.002761 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8183.t1 MSPSIVAEKWWKNSIIYQIYPASFKDSNGDGIGDIPGIISSLDYITSLGVDVIWLCPMYDSPQIDMGYDVADYKS VYGPYGTVQDMDTLIDACHKRGLRIILDLVVNHTSDQHKWFKESRSSKTNPKRDWYIWKPAKYDANGNRQPPNNW RSIFGGSAWEWDETTEEYYLHLFCVEQPDLNWENPETRKAVYEDAMEFWLQKGVDGFRVDTVNMYSKHPDYPNAP ILDPKSDTQPAFSLFCNGPRIHEYMREMNDVLSKYDAMTVGELPNTHTLEGVLSYVSAAEKQLSMVFQFDIVDLG QGKDYKFQTNFPGWNLRELKAAVKNTQDIIKGTDAWTTVFMENHDQGRSVSRFGSDKTPELRVRSAKMLAMMQST LSGTQFIYQGQEIGMVNAPREWTIDEYKDIDSINYYRMISEKSGKDPAELSKAMDALQYLARDHSRLPMQWSADA NAGFSPASSAKPWMRPHDNYPEINVKLQEKDSSSVLSFWKQMNQLRKEYADLLVFGEFEILDEPNQSVFTYTKTN HNQTILVVLNFSNTTQKFEKPDSVKSENWKLLASNVDGHNEDLHAFEGRVFLV* |
| Coding | >Pro_DTO377G3_2|g8183.t1 ATGTCTCCCTCTATAGTGGCCGAAAAGTGGTGGAAAAACTCCATCATCTACCAAATCTACCCCGCCAGCTTCAAA GATTCTAATGGCGATGGCATTGGCGACATCCCAGGGATTATCTCATCGCTCGATTATATCACAAGCCTTGGTGTG GATGTAATTTGGCTGTGTCCCATGTACGACAGCCCGCAGATTGACATGGGCTATGATGTTGCCGACTACAAAAGC GTATATGGCCCATACGGTACTGTCCAGGACATGGATACCCTCATTGACGCATGCCACAAGCGAGGACTTCGGATT ATCCTGGACTTAGTCGTGAATCACACATCAGACCAGCACAAATGGTTCAAGGAGTCCCGCTCTTCAAAGACAAAC CCCAAGCGCGACTGGTACATCTGGAAGCCAGCTAAATACGACGCGAACGGAAATCGTCAGCCGCCAAATAACTGG CGCAGCATTTTCGGTGGCAGTGCGTGGGAGTGGGACGAGACAACAGAAGAATACTATCTCCATCTGTTCTGTGTT GAGCAGCCCGATCTCAATTGGGAGAACCCCGAGACTCGCAAGGCAGTCTACGAGGATGCGATGGAGTTCTGGCTG CAGAAGGGCGTGGATGGCTTCCGCGTCGATACGGTCAACATGTACAGCAAGCACCCCGACTATCCCAATGCTCCA ATCCTTGATCCAAAGTCCGACACACAACCGGCTTTCTCGCTGTTCTGCAACGGTCCTCGCATCCACGAGTACATG CGCGAGATGAACGACGTGCTTTCCAAATACGATGCAATGACCGTTGGTGAATTGCCAAACACGCATACCTTGGAA GGGGTTCTGAGCTATGTCTCAGCGGCAGAGAAGCAGCTGAGCATGGTCTTCCAATTCGACATCGTGGACCTCGGC CAGGGCAAGGACTATAAGTTCCAGACCAATTTTCCGGGCTGGAATCTACGAGAACTAAAAGCCGCCGTGAAAAAT ACACAAGATATCATCAAGGGCACTGATGCATGGACCACAGTGTTCATGGAAAATCACGACCAGGGCCGGTCTGTG AGTCGGTTCGGCTCTGACAAGACACCCGAGTTGAGGGTTCGGTCTGCAAAGATGCTTGCTATGATGCAAAGCACT CTCTCCGGCACGCAGTTTATCTACCAGGGCCAGGAGATTGGAATGGTGAACGCGCCTCGAGAGTGGACGATTGAC GAATACAAAGACATAGATAGCATCAACTATTATCGGATGATAAGCGAAAAATCCGGCAAAGACCCAGCCGAGTTA AGCAAGGCGATGGATGCTCTGCAGTATTTGGCGAGAGATCATTCCAGACTCCCCATGCAGTGGAGTGCTGATGCC AATGCTGGCTTTTCACCGGCCTCATCGGCAAAGCCGTGGATGCGCCCGCATGACAATTACCCTGAGATCAATGTG AAGCTCCAGGAGAAAGACTCATCTTCTGTTCTTTCCTTCTGGAAACAGATGAATCAGCTGCGAAAAGAGTATGCC GATCTCCTGGTCTTTGGAGAGTTTGAGATCCTCGACGAGCCAAATCAGAGTGTCTTCACCTATACTAAGACAAAT CACAACCAGACCATTTTGGTTGTTCTCAACTTCTCAAATACAACACAGAAGTTTGAGAAACCTGATTCCGTGAAG AGCGAAAATTGGAAATTGTTGGCTAGCAATGTAGATGGGCACAATGAGGACTTGCATGCGTTTGAGGGAAGAGTC TTTTTGGTTTAG |
| Transcript | >Pro_DTO377G3_2|g8183.t1 ATGTCTCCCTCTATAGTGGCCGAAAAGTGGTGGAAAAACTCCATCATCTACCAAATCTACCCCGCCAGCTTCAAA GATTCTAATGGCGATGGCATTGGCGACATCCCAGGGATTATCTCATCGCTCGATTATATCACAAGCCTTGGTGTG GATGTAATTTGGCTGTGTCCCATGTACGACAGCCCGCAGATTGACATGGGCTATGATGTTGCCGACTACAAAAGC GTATATGGCCCATACGGTACTGTCCAGGACATGGATACCCTCATTGACGCATGCCACAAGCGAGGACTTCGGATT ATCCTGGACTTAGTCGTGAATCACACATCAGACCAGCACAAATGGTTCAAGGAGTCCCGCTCTTCAAAGACAAAC CCCAAGCGCGACTGGTACATCTGGAAGCCAGCTAAATACGACGCGAACGGAAATCGTCAGCCGCCAAATAACTGG CGCAGCATTTTCGGTGGCAGTGCGTGGGAGTGGGACGAGACAACAGAAGAATACTATCTCCATCTGTTCTGTGTT GAGCAGCCCGATCTCAATTGGGAGAACCCCGAGACTCGCAAGGCAGTCTACGAGGATGCGATGGAGTTCTGGCTG CAGAAGGGCGTGGATGGCTTCCGCGTCGATACGGTCAACATGTACAGCAAGCACCCCGACTATCCCAATGCTCCA ATCCTTGATCCAAAGTCCGACACACAACCGGCTTTCTCGCTGTTCTGCAACGGTCCTCGCATCCACGAGTACATG CGCGAGATGAACGACGTGCTTTCCAAATACGATGCAATGACCGTTGGTGAATTGCCAAACACGCATACCTTGGAA GGGGTTCTGAGCTATGTCTCAGCGGCAGAGAAGCAGCTGAGCATGGTCTTCCAATTCGACATCGTGGACCTCGGC CAGGGCAAGGACTATAAGTTCCAGACCAATTTTCCGGGCTGGAATCTACGAGAACTAAAAGCCGCCGTGAAAAAT ACACAAGATATCATCAAGGGCACTGATGCATGGACCACAGTGTTCATGGAAAATCACGACCAGGGCCGGTCTGTG AGTCGGTTCGGCTCTGACAAGACACCCGAGTTGAGGGTTCGGTCTGCAAAGATGCTTGCTATGATGCAAAGCACT CTCTCCGGCACGCAGTTTATCTACCAGGGCCAGGAGATTGGAATGGTGAACGCGCCTCGAGAGTGGACGATTGAC GAATACAAAGACATAGATAGCATCAACTATTATCGGATGATAAGCGAAAAATCCGGCAAAGACCCAGCCGAGTTA AGCAAGGCGATGGATGCTCTGCAGTATTTGGCGAGAGATCATTCCAGACTCCCCATGCAGTGGAGTGCTGATGCC AATGCTGGCTTTTCACCGGCCTCATCGGCAAAGCCGTGGATGCGCCCGCATGACAATTACCCTGAGATCAATGTG AAGCTCCAGGAGAAAGACTCATCTTCTGTTCTTTCCTTCTGGAAACAGATGAATCAGCTGCGAAAAGAGTATGCC GATCTCCTGGTCTTTGGAGAGTTTGAGATCCTCGACGAGCCAAATCAGAGTGTCTTCACCTATACTAAGACAAAT CACAACCAGACCATTTTGGTTGTTCTCAACTTCTCAAATACAACACAGAAGTTTGAGAAACCTGATTCCGTGAAG AGCGAAAATTGGAAATTGTTGGCTAGCAATGTAGATGGGCACAATGAGGACTTGCATGCGTTTGAGGGAAGAGTC TTTTTGGTTTAG |
| Gene | >Pro_DTO377G3_2|g8183.t1 ATGTCTCCCTCTATAGTGGCCGAAAAGTGGTGGAAAAACTCCATCATCTACCAAATCTACCCCGCCAGCTTCAAA GATTCTAATGGCGATGGCATTGGCGACATCCCAGGGATTATCTCATCGCTCGATTATATCACAAGCCTTGGTGTG GATGTAATTTGGCTGTGTCCCATGTACGACAGCCCGCAGATTGACATGGGCTATGATGTTGCCGACTACAAAAGC GTATATGGCCCATACGGTACTGTCCAGGACATGGATACCCTCATTGACGCATGCCACAAGCGAGGACTTCGGATT ATCCTGGACTTAGTCGTGAATCACACATCAGACCAGCACAAATGGTTCAAGGAGTCCCGCTCTTCAAAGACAAAC CCCAAGCGCGACTGGTACATCTGGAAGCCAGCTAAATACGACGCGAACGGAAATCGTCAGCCGCCAAATAACTGG CGCAGCATTTTCGGTGGCAGTGCGTGGGAGTGGGACGAGACAACAGAAGAATACTATCTCCATCTGTTCTGTGTT GAGCAGCCCGATCTCAATTGGGAGAACCCCGAGACTCGCAAGGCAGTCTACGAGGATGCGATGGAGTTCTGGCTG CAGAAGGGCGTGGATGGCTTCCGCGTCGATACGGTCAACATGTACAGCAAGCACCCCGACTATCCCAATGCTCCA ATCCTTGATCCAAAGTCCGACACACAACCGGCTTTCTCGCTGTTCTGCAACGGTCCTCGCATCCACGAGTACATG CGCGAGATGAACGACGTGCTTTCCAAATACGATGCAATGACCGTTGGTGAATTGCCAAACACGCATACCTTGGAA GGGGTTCTGAGCTATGTCTCAGCGGCAGAGAAGCAGCTGAGCATGGTCTTCCAATTCGACATCGTGGACCTCGGC CAGGGCAAGGACTATAAGTTCCAGACCAATTTTCCGGGCTGGAATCTACGAGAACTAAAAGCCGCCGTGAAAAAT ACACAAGATATCATCAAGGGCACTGATGCATGGACCACAGTGTTCATGGAAAATCACGACCAGGGCCGGTCTGTG AGTCGGTTCGGCTCTGACAAGACACCCGAGTTGAGGGTTCGGTCTGCAAAGATGCTTGCTATGATGCAAAGCACT CTCTCCGGCACGCAGTTTATCTACCAGGGCCAGGAGATTGGAATGGTGAACGCGCCTCGAGAGTGGACGATTGAC GAATACAAAGACATAGATAGCATCAACTATTATCGGATGATAAGCGAAAAATCCGGCAAAGACCCAGCCGAGTTA AGCAAGGCGATGGATGCTCTGCAGTATTTGGCGAGAGATCATTCCAGACTCCCCATGCAGTGGAGTGCTGATGCC AATGCTGGCTTTTCACCGGCCTCATCGGCAAAGCCGTGGATGCGCCCGCATGACAATTACCCTGAGATCAATGTG AAGCTCCAGGAGAAAGACTCATCTTCTGTTCTTTCCTTCTGGAAACAGATGAATCAGCTGCGAAAAGAGTATGCC GATCTCCTGGTCTTTGGAGAGTTTGAGATCCTCGACGAGCCAAATCAGAGTGTCTTCACCTATACTAAGACAAAT CACAACCAGACCATTTTGGTTGTTCTCAACTTCTCAAATACAACACAGAAGTTTGAGAAACCTGATTCCGTGAAG AGCGAAAATTGGAAATTGTTGGCTAGCAATGTAGATGGGCACAATGAGGACTTGCATGCGTTTGAGGGAAGAGTC TTTTTGGTTTAG |