© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8182.t1 |
| Gene name | |
| Location | scaffold_30:52886..54497 |
| Strand | - |
| Gene length (bp) | 1611 |
| Transcript length (bp) | 1611 |
| Coding sequence length (bp) | 1611 |
| Protein length (aa) | 537 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.0E-86 | 61 | 508 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.2E-20 | 70 | 449 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 55 | 77 | 22 |
| 2 | 97 | 119 | 22 |
| 3 | 132 | 151 | 19 |
| 4 | 156 | 178 | 22 |
| 5 | 191 | 213 | 22 |
| 6 | 228 | 250 | 22 |
| 7 | 311 | 333 | 22 |
| 8 | 348 | 370 | 22 |
| 9 | 375 | 397 | 22 |
| 10 | 407 | 429 | 22 |
| 11 | 442 | 464 | 22 |
| 12 | 474 | 491 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.45 | 0.19 | 2.71 |
| 5d_25C | Five days - 25 degrees Celsius | 0.69 | 0.00 | 1.38 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.85 | 0.00 | 1.71 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.78 | 0.01 | 1.55 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.78 | 0.00 | 1.56 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.67 | 0.22 | 3.11 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.175176 | no |
| 3d_25C | 7d_25C | 0.359461 | no |
| 3d_25C | 7d_15C | 0.287210 | no |
| 3d_25C | 7d_30C | 0.845925 | no |
| 3d_25C | 10d_25C | 0.283806 | no |
| 5d_25C | 7d_25C | 0.775336 | no |
| 5d_25C | 7d_15C | 0.875318 | no |
| 5d_25C | 7d_30C | 0.109355 | no |
| 5d_25C | 10d_25C | 0.879031 | no |
| 7d_25C | 7d_15C | 0.917669 | no |
| 7d_25C | 7d_30C | 0.224450 | no |
| 7d_25C | 10d_25C | 0.917194 | no |
| 7d_15C | 7d_30C | 0.179445 | no |
| 7d_15C | 10d_25C | 0.990717 | no |
| 7d_30C | 10d_25C | 0.175649 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8182.t1 MASEKQATDHVETYTDVKPGYTDLQTSTEAHAAIEKEHKMTAMEALRLYSKAVAWSLLLSCAIIMEGYDVVLIGS FFAFPAFNLKYGELMSDGKYGLAASWQASLTNAMSCGQIVGLFVNGIVSERYGYRKTLMACLATTVGFIFILFFA PNVQTLVAGELLMGIPLGVYQTLTVTYASEVCPVALRAYLTTYVNLCWVFGQLIASGVLRGLVAHTDQWAYRIPF AIQWVWPVPIFIGVYLAPESPWWLVRKDRREDAIKSVKRLTRADPNFSAEETVSMIVYTNAMEQHAETGASYIDC FKGTDLRRTEIACCVWAVQSLCGSGLMGYSTVFYQRAGLADEQSFTMSLAQYAIGVVGTFSSWLFMTYFGRRTLY VGGLAILAVILFVIGFASVAPATTSLSWATGSMLLVYTFVYDSTIGPVCFSLVSEMPSSRLRTKTVVLARNAYNV LNLVTGIIIPYMLNVDAWNWRGKSGFFWGGLCILCLVWSFFRLPEPKGRSYAELDVLFENKVRTREFPSAKTGLV QSELEGTKGSV* |
| Coding | >Pro_DTO377G3_2|g8182.t1 ATGGCTTCTGAAAAGCAAGCCACCGATCATGTCGAGACATATACAGATGTCAAGCCGGGCTACACAGACCTCCAA ACCAGCACCGAAGCCCACGCCGCCATCGAAAAAGAACACAAAATGACCGCCATGGAAGCCCTGCGACTCTACTCC AAAGCTGTAGCCTGGTCCCTCCTCCTCTCCTGCGCCATCATCATGGAAGGCTACGACGTGGTCCTGATCGGCTCA TTCTTCGCCTTCCCAGCCTTCAACCTGAAATACGGCGAACTCATGTCGGACGGCAAGTACGGCCTCGCTGCCTCC TGGCAAGCCAGTCTGACCAACGCGATGAGCTGCGGCCAGATCGTAGGCCTCTTTGTGAACGGCATCGTCTCCGAG CGCTACGGCTACCGCAAAACCCTAATGGCCTGTCTAGCCACTACCGTCGGCTTCATCTTCATCCTCTTCTTCGCA CCAAACGTCCAGACTCTCGTCGCCGGCGAACTGCTCATGGGAATCCCCCTCGGCGTCTACCAGACCCTGACAGTC ACATACGCATCAGAGGTATGCCCCGTCGCACTACGCGCCTACCTAACTACCTACGTCAATCTGTGCTGGGTATTC GGGCAGCTGATCGCTTCAGGCGTGCTAAGGGGTCTTGTCGCACACACCGACCAGTGGGCGTACCGCATCCCCTTC GCCATCCAGTGGGTATGGCCGGTGCCAATCTTCATCGGGGTGTACCTGGCGCCCGAGAGTCCATGGTGGCTTGTG CGGAAAGACAGACGCGAAGACGCCATCAAGTCCGTGAAGCGGCTCACGCGCGCAGACCCCAATTTCAGCGCAGAG GAAACTGTCTCGATGATTGTGTATACGAATGCCATGGAGCAGCACGCTGAGACTGGCGCCTCGTATATTGACTGC TTTAAGGGGACCGATCTGCGACGCACGGAGATCGCGTGCTGTGTGTGGGCGGTGCAGAGTCTATGCGGCAGTGGT CTGATGGGATACTCGACTGTCTTCTACCAGCGTGCTGGGCTGGCGGACGAGCAGTCATTTACCATGTCGCTGGCG CAGTATGCGATTGGGGTTGTTGGGACGTTTAGCTCGTGGCTATTTATGACGTACTTTGGTCGGCGCACGCTCTAT GTGGGTGGCCTGGCTATACTGGCGGTTATCCTGTTTGTGATTGGGTTTGCGTCTGTTGCGCCGGCGACTACGTCA CTCTCGTGGGCGACGGGGTCTATGCTGCTTGTGTATACGTTCGTCTATGATTCGACTATCGGGCCGGTGTGTTTC TCGCTGGTTTCGGAGATGCCGTCGTCCAGACTTCGGACGAAGACTGTTGTCCTGGCGAGGAATGCGTATAACGTG CTTAATCTGGTGACCGGGATTATTATTCCCTATATGCTGAATGTGGATGCGTGGAATTGGAGGGGGAAGTCTGGG TTTTTCTGGGGTGGACTGTGCATTCTCTGTCTTGTTTGGTCGTTCTTCAGACTTCCTGAGCCCAAGGGGCGCTCT TATGCTGAGTTGGATGTTCTATTTGAGAACAAGGTGCGCACAAGGGAGTTCCCGTCTGCGAAGACGGGTTTGGTG CAGAGTGAGCTCGAGGGGACGAAAGGCTCTGTTTGA |
| Transcript | >Pro_DTO377G3_2|g8182.t1 ATGGCTTCTGAAAAGCAAGCCACCGATCATGTCGAGACATATACAGATGTCAAGCCGGGCTACACAGACCTCCAA ACCAGCACCGAAGCCCACGCCGCCATCGAAAAAGAACACAAAATGACCGCCATGGAAGCCCTGCGACTCTACTCC AAAGCTGTAGCCTGGTCCCTCCTCCTCTCCTGCGCCATCATCATGGAAGGCTACGACGTGGTCCTGATCGGCTCA TTCTTCGCCTTCCCAGCCTTCAACCTGAAATACGGCGAACTCATGTCGGACGGCAAGTACGGCCTCGCTGCCTCC TGGCAAGCCAGTCTGACCAACGCGATGAGCTGCGGCCAGATCGTAGGCCTCTTTGTGAACGGCATCGTCTCCGAG CGCTACGGCTACCGCAAAACCCTAATGGCCTGTCTAGCCACTACCGTCGGCTTCATCTTCATCCTCTTCTTCGCA CCAAACGTCCAGACTCTCGTCGCCGGCGAACTGCTCATGGGAATCCCCCTCGGCGTCTACCAGACCCTGACAGTC ACATACGCATCAGAGGTATGCCCCGTCGCACTACGCGCCTACCTAACTACCTACGTCAATCTGTGCTGGGTATTC GGGCAGCTGATCGCTTCAGGCGTGCTAAGGGGTCTTGTCGCACACACCGACCAGTGGGCGTACCGCATCCCCTTC GCCATCCAGTGGGTATGGCCGGTGCCAATCTTCATCGGGGTGTACCTGGCGCCCGAGAGTCCATGGTGGCTTGTG CGGAAAGACAGACGCGAAGACGCCATCAAGTCCGTGAAGCGGCTCACGCGCGCAGACCCCAATTTCAGCGCAGAG GAAACTGTCTCGATGATTGTGTATACGAATGCCATGGAGCAGCACGCTGAGACTGGCGCCTCGTATATTGACTGC TTTAAGGGGACCGATCTGCGACGCACGGAGATCGCGTGCTGTGTGTGGGCGGTGCAGAGTCTATGCGGCAGTGGT CTGATGGGATACTCGACTGTCTTCTACCAGCGTGCTGGGCTGGCGGACGAGCAGTCATTTACCATGTCGCTGGCG CAGTATGCGATTGGGGTTGTTGGGACGTTTAGCTCGTGGCTATTTATGACGTACTTTGGTCGGCGCACGCTCTAT GTGGGTGGCCTGGCTATACTGGCGGTTATCCTGTTTGTGATTGGGTTTGCGTCTGTTGCGCCGGCGACTACGTCA CTCTCGTGGGCGACGGGGTCTATGCTGCTTGTGTATACGTTCGTCTATGATTCGACTATCGGGCCGGTGTGTTTC TCGCTGGTTTCGGAGATGCCGTCGTCCAGACTTCGGACGAAGACTGTTGTCCTGGCGAGGAATGCGTATAACGTG CTTAATCTGGTGACCGGGATTATTATTCCCTATATGCTGAATGTGGATGCGTGGAATTGGAGGGGGAAGTCTGGG TTTTTCTGGGGTGGACTGTGCATTCTCTGTCTTGTTTGGTCGTTCTTCAGACTTCCTGAGCCCAAGGGGCGCTCT TATGCTGAGTTGGATGTTCTATTTGAGAACAAGGTGCGCACAAGGGAGTTCCCGTCTGCGAAGACGGGTTTGGTG CAGAGTGAGCTCGAGGGGACGAAAGGCTCTGTTTGA |
| Gene | >Pro_DTO377G3_2|g8182.t1 ATGGCTTCTGAAAAGCAAGCCACCGATCATGTCGAGACATATACAGATGTCAAGCCGGGCTACACAGACCTCCAA ACCAGCACCGAAGCCCACGCCGCCATCGAAAAAGAACACAAAATGACCGCCATGGAAGCCCTGCGACTCTACTCC AAAGCTGTAGCCTGGTCCCTCCTCCTCTCCTGCGCCATCATCATGGAAGGCTACGACGTGGTCCTGATCGGCTCA TTCTTCGCCTTCCCAGCCTTCAACCTGAAATACGGCGAACTCATGTCGGACGGCAAGTACGGCCTCGCTGCCTCC TGGCAAGCCAGTCTGACCAACGCGATGAGCTGCGGCCAGATCGTAGGCCTCTTTGTGAACGGCATCGTCTCCGAG CGCTACGGCTACCGCAAAACCCTAATGGCCTGTCTAGCCACTACCGTCGGCTTCATCTTCATCCTCTTCTTCGCA CCAAACGTCCAGACTCTCGTCGCCGGCGAACTGCTCATGGGAATCCCCCTCGGCGTCTACCAGACCCTGACAGTC ACATACGCATCAGAGGTATGCCCCGTCGCACTACGCGCCTACCTAACTACCTACGTCAATCTGTGCTGGGTATTC GGGCAGCTGATCGCTTCAGGCGTGCTAAGGGGTCTTGTCGCACACACCGACCAGTGGGCGTACCGCATCCCCTTC GCCATCCAGTGGGTATGGCCGGTGCCAATCTTCATCGGGGTGTACCTGGCGCCCGAGAGTCCATGGTGGCTTGTG CGGAAAGACAGACGCGAAGACGCCATCAAGTCCGTGAAGCGGCTCACGCGCGCAGACCCCAATTTCAGCGCAGAG GAAACTGTCTCGATGATTGTGTATACGAATGCCATGGAGCAGCACGCTGAGACTGGCGCCTCGTATATTGACTGC TTTAAGGGGACCGATCTGCGACGCACGGAGATCGCGTGCTGTGTGTGGGCGGTGCAGAGTCTATGCGGCAGTGGT CTGATGGGATACTCGACTGTCTTCTACCAGCGTGCTGGGCTGGCGGACGAGCAGTCATTTACCATGTCGCTGGCG CAGTATGCGATTGGGGTTGTTGGGACGTTTAGCTCGTGGCTATTTATGACGTACTTTGGTCGGCGCACGCTCTAT GTGGGTGGCCTGGCTATACTGGCGGTTATCCTGTTTGTGATTGGGTTTGCGTCTGTTGCGCCGGCGACTACGTCA CTCTCGTGGGCGACGGGGTCTATGCTGCTTGTGTATACGTTCGTCTATGATTCGACTATCGGGCCGGTGTGTTTC TCGCTGGTTTCGGAGATGCCGTCGTCCAGACTTCGGACGAAGACTGTTGTCCTGGCGAGGAATGCGTATAACGTG CTTAATCTGGTGACCGGGATTATTATTCCCTATATGCTGAATGTGGATGCGTGGAATTGGAGGGGGAAGTCTGGG TTTTTCTGGGGTGGACTGTGCATTCTCTGTCTTGTTTGGTCGTTCTTCAGACTTCCTGAGCCCAAGGGGCGCTCT TATGCTGAGTTGGATGTTCTATTTGAGAACAAGGTGCGCACAAGGGAGTTCCCGTCTGCGAAGACGGGTTTGGTG CAGAGTGAGCTCGAGGGGACGAAAGGCTCTGTTTGA |