© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8180.t1 |
| Gene name | |
| Location | scaffold_30:46914..47779 |
| Strand | - |
| Gene length (bp) | 865 |
| Transcript length (bp) | 552 |
| Coding sequence length (bp) | 552 |
| Protein length (aa) | 184 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00025 | Arf | ADP-ribosylation factor family | 2.9E-43 | 17 | 179 |
| PF00071 | Ras | Ras family | 5.5E-19 | 24 | 180 |
| PF08477 | Roc | Ras of Complex, Roc, domain of DAPkinase | 1.6E-14 | 23 | 133 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 1.2E-07 | 23 | 128 |
| PF04670 | Gtr1_RagA | Gtr1/RagA G protein conserved region | 6.2E-06 | 24 | 146 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0003924 | GTPase activity | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0043167 | ion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:1901265 | nucleoside phosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 53.29 | 25.57 | 81.02 |
| 5d_25C | Five days - 25 degrees Celsius | 98.82 | 53.89 | 143.74 |
| 7d_25C | Seven days - 25 degrees Celsius | 130.88 | 75.89 | 185.87 |
| 10d_25C | Ten days - 25 degrees Celsius | 274.88 | 167.82 | 381.94 |
| 7d_15C | Seven days - 15 degrees Celsius | 47.66 | 21.84 | 73.48 |
| 7d_30C | Seven days - 30 degrees Celsius | 169.53 | 99.89 | 239.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.016361 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.782321 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.285327 | no |
| 5d_25C | 7d_15C | 0.004045 | yes |
| 5d_25C | 7d_30C | 0.016361 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.306203 | no |
| 7d_25C | 10d_25C | 0.001278 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.018560 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8180.t1 MAGIFRAIYDWLLRMFWASEMDVTMIGLQNAGKSSLLRVLAGGEFTIDSIPTIGFNTKRVQKGHVTLKCWDLGGQ PRFRPMWERYCRGVNAIVYIVDAADRAALPVATEELHDLMKKPTLDSIPLLVLGNKSDLPDKLSVDEIIEAMDLK SITHREVSCYGISAKEETNLDAVLHWLIARASR* |
| Coding | >Pro_DTO377G3_2|g8180.t1 ATGGCCGGTATATTTCGTGCTATCTATGACTGGCTTCTGAGGATGTTCTGGGCCAGCGAGATGGATGTCACCATG ATCGGCCTTCAGAATGCCGGCAAGTCTTCTCTGCTGCGTGTGTTGGCGGGTGGAGAGTTCACTATCGACTCCATC CCAACAATCGGGTTCAACACCAAAAGAGTGCAGAAAGGCCATGTGACCTTGAAATGCTGGGATCTGGGTGGGCAA CCTCGATTTCGGCCGATGTGGGAACGGTATTGTCGGGGCGTCAACGCGATCGTGTATATCGTGGATGCAGCAGAC CGCGCTGCACTCCCAGTAGCGACAGAAGAACTTCACGACCTGATGAAAAAGCCCACGCTGGATAGCATCCCACTC CTGGTCCTCGGAAACAAGTCCGATCTTCCAGACAAGCTGTCTGTGGATGAGATCATTGAGGCGATGGATCTAAAA TCCATCACCCATCGCGAAGTAAGCTGCTACGGTATCAGCGCCAAGGAGGAAACCAACCTTGACGCTGTCCTGCAC TGGCTCATTGCTCGAGCTAGCCGGTGA |
| Transcript | >Pro_DTO377G3_2|g8180.t1 ATGGCCGGTATATTTCGTGCTATCTATGACTGGCTTCTGAGGATGTTCTGGGCCAGCGAGATGGATGTCACCATG ATCGGCCTTCAGAATGCCGGCAAGTCTTCTCTGCTGCGTGTGTTGGCGGGTGGAGAGTTCACTATCGACTCCATC CCAACAATCGGGTTCAACACCAAAAGAGTGCAGAAAGGCCATGTGACCTTGAAATGCTGGGATCTGGGTGGGCAA CCTCGATTTCGGCCGATGTGGGAACGGTATTGTCGGGGCGTCAACGCGATCGTGTATATCGTGGATGCAGCAGAC CGCGCTGCACTCCCAGTAGCGACAGAAGAACTTCACGACCTGATGAAAAAGCCCACGCTGGATAGCATCCCACTC CTGGTCCTCGGAAACAAGTCCGATCTTCCAGACAAGCTGTCTGTGGATGAGATCATTGAGGCGATGGATCTAAAA TCCATCACCCATCGCGAAGTAAGCTGCTACGGTATCAGCGCCAAGGAGGAAACCAACCTTGACGCTGTCCTGCAC TGGCTCATTGCTCGAGCTAGCCGGTGA |
| Gene | >Pro_DTO377G3_2|g8180.t1 ATGGCCGGTATATTTCGTGCTATCTATGACTGGCTTCTGAGGATGTTCTGGTAAGTGGGCCGTTTGATATATGCA GTGTTCGGGTGACCACGGCCCGTCCCCGCAGATGAAGCCCTGCTAAAACTCCATACAGGGCCAGCGAGATGGATG TCACCATGATCGGCCTTCAGAATGCCGGCAAGTCTTCTCTGCTGCGTGTGTTGGCGGTAAGTTGATCTGATAAAG TCCTGACGGGGTGTTGCTGACCATAACAGGGTGGAGAGTTCACTATCGAGTAAGTTATAGATGGTCTCACATCTG AGATCATTTCATCTTAGCCATGTCCTAATCGTCTTCCTTGTAGCTCCATCCCAACAATCGGGTTCAACACCAAAA GAGTGCAGAAAGGCCATGTGACCTTGAAATGGTATGTTCATCCTTCCCGATTAAGCCCGGCGGCGCTAATATATC CCTCGCAGCTGGGATCTGGGTGGGCAACCTCGATTTCGGCCGATGTGGGAACGGTATTGTCGGGGCGTCAACGCG ATCGTGTAAGACTTGCTTCTTTCCCCGTCCCATCTCTTCCCGGCATACTAACCAAGGTGAATAAAGGTATATCGT GGATGCAGCAGACCGCGCTGCACTCCCAGTAGCGACAGAAGAACTTCACGACCTGATGAAAAAGCCCACGCTGGA TAGCATCCCACTCCTGGTCCTCGGAAACAAGTCCGATCTTCCAGACAAGCTGTCTGTGGATGAGATCATTGAGGC GATGGATCTAAAATCCATCACCCATCGCGAAGTAAGCTGCTACGGTATCAGCGCCAAGGAGGAAACCAACCTTGA CGCTGTCCTGCACTGGCTCATTGCTCGAGCTAGCCGGTGA |