© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8175.t1 |
| Gene name | |
| Location | scaffold_30:32759..34904 |
| Strand | + |
| Gene length (bp) | 2145 |
| Transcript length (bp) | 2019 |
| Coding sequence length (bp) | 2019 |
| Protein length (aa) | 673 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05199 | GMC_oxred_C | GMC oxidoreductase | 1.9E-29 | 520 | 663 |
| PF00732 | GMC_oxred_N | GMC oxidoreductase | 4.4E-05 | 142 | 213 |
| PF00732 | GMC_oxred_N | GMC oxidoreductase | 1.3E-17 | 313 | 417 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.04 | 0.0 | 0.14 |
| 5d_25C | Five days - 25 degrees Celsius | 0.06 | 0.0 | 0.18 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.03 | 0.0 | 0.13 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.03 | 0.0 | 0.14 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.01 | 0.0 | 0.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8175.t1 MRFPVVVGLFSTLSIVSAIDHRPDHRYHDAHRRSSDNSTTEYDYVVVGSGAGGGPVAARLAIAGYKVLLLEAGDD QGNATQQIVPALQLQSTEYEPMRWDYFVNHYSNLTRQEEDSKMTYRTPAGDLHVGSNAPNGSEPLGILYPRAGTL GGCSAHNAMITIYPYENDWEQLASLTGNDSWSASNMRQYFERLERNRYLPSSIIGHGFDGWLTTSLTDLRLVIED QKLLSLILAGATAAGQTLLGKLITTVTGLARVLLRDLNNPLPSRDYEEGPYQVPLAVDVPEYKRTGPREFLMKTV NAVNSDGSRKYHLDIQLNTLVTKLRFDTTGAKPRATGVDYLRGQSLYRADPRASQTSSNGTPGSVSASREVILSA GSFNTPQLLKLSGIGPKEELSKFGISTLVNLPGVGRNLQDRYEIGTVGKSPTDFVLTSKCTFLYSLPDPCLEQYE NNPLFKGTYTTNGIAIAIIRKSSVAEDEPDLLISGAPVNFPGYYPNYSYEGLKDAQHWTWITLKSRSRNNAGTVE LRSTDPRDMPLINFHSFDTGVTTDGADDKDLQAVYEAMQFSRTIFDDLIPLDGGFEEVWPGPNVTTENELKDFIK KEAWGHHACCTAAIGEDGDPQAVLDADFRVRGVDGLRVVDASVFPKIPGYYIALPIYMISEKAAEVIIADAV* |
| Coding | >Pro_DTO377G3_2|g8175.t1 ATGCGTTTTCCTGTGGTAGTTGGGCTATTTTCCACTCTTTCAATTGTCTCAGCTATTGATCATAGACCGGATCAT CGATATCATGATGCACACAGGAGGTCTTCGGATAACTCCACCACAGAATATGATTATGTTGTTGTTGGCTCTGGC GCCGGAGGTGGCCCTGTAGCGGCACGATTGGCCATTGCAGGCTACAAGGTTCTTCTTCTAGAAGCAGGAGATGAC CAGGGAAATGCGACTCAGCAAATTGTCCCCGCTCTGCAGCTCCAGTCCACCGAATACGAGCCGATGAGATGGGAT TATTTCGTGAATCACTACTCGAACTTGACTCGTCAGGAAGAAGACAGCAAAATGACTTACCGGACACCTGCTGGT GACCTCCATGTTGGAAGCAATGCGCCCAATGGGTCTGAACCTTTGGGAATTTTATACCCTCGAGCCGGTACTTTA GGTGGATGCTCTGCTCATAATGCCATGATCACGATCTACCCGTACGAGAATGACTGGGAGCAACTGGCCAGTCTC ACTGGCAATGATTCATGGTCTGCCTCGAATATGCGACAATACTTCGAGAGACTAGAGCGCAACCGATACCTTCCC AGCAGCATCATAGGCCACGGATTCGACGGATGGCTTACAACGAGCCTCACAGACCTGCGTCTTGTCATTGAAGAC CAAAAGCTTCTGTCCTTGATCCTGGCCGGTGCGACCGCCGCGGGTCAAACACTGCTGGGCAAACTGATCACTACG GTCACGGGCCTCGCCCGAGTTCTGCTGCGTGATCTTAACAACCCCCTTCCTTCGCGTGACTACGAGGAGGGTCCA TACCAAGTCCCTCTCGCCGTAGATGTCCCCGAATATAAGCGGACAGGTCCTCGAGAATTCCTCATGAAGACAGTC AATGCTGTAAACTCGGATGGTTCGCGAAAGTATCACCTTGATATCCAGTTGAACACCTTGGTAACCAAGCTCCGG TTCGATACCACCGGAGCGAAGCCACGGGCTACCGGTGTTGACTATCTTCGAGGACAGAGCCTCTACCGTGCAGAC CCCCGGGCTTCCCAGACATCGTCTAATGGAACACCGGGTAGCGTGAGTGCTTCTCGTGAAGTGATCCTGTCTGCA GGCTCATTCAACACCCCCCAGCTGCTGAAGCTGAGTGGTATTGGCCCAAAGGAGGAGTTGTCCAAATTTGGAATC TCAACCCTGGTGAATCTCCCCGGCGTCGGTCGTAATCTTCAGGATCGGTACGAAATAGGTACAGTGGGCAAGTCA CCCACCGATTTCGTCCTCACATCGAAGTGTACCTTTTTGTATTCTCTTCCCGACCCCTGTTTGGAACAGTATGAA AACAATCCTTTGTTCAAAGGTACATATACCACCAATGGAATCGCCATCGCCATCATTCGCAAGTCGTCTGTTGCA GAAGATGAGCCCGACCTACTGATCTCAGGAGCACCCGTCAACTTCCCCGGCTATTATCCCAACTACTCCTACGAG GGTCTCAAAGATGCCCAGCACTGGACCTGGATTACGTTAAAGTCGCGCTCTCGCAATAACGCTGGTACAGTTGAG TTGCGCTCTACCGACCCGCGTGACATGCCCCTTATCAACTTCCACTCGTTCGATACCGGAGTGACCACAGATGGT GCAGATGACAAGGACCTGCAGGCTGTATATGAAGCAATGCAGTTCTCCCGCACAATATTCGATGACCTTATTCCC CTTGATGGCGGGTTTGAAGAGGTCTGGCCGGGACCCAATGTCACTACTGAGAATGAACTGAAAGACTTCATTAAA AAAGAGGCATGGGGTCACCATGCCTGCTGTACTGCTGCAATTGGAGAAGATGGAGATCCTCAGGCTGTGTTGGAT GCGGACTTCCGTGTTCGTGGGGTTGACGGCTTGCGTGTTGTGGATGCTTCGGTCTTTCCTAAGATTCCAGGTTAC TATATCGCCCTACCCATCTATATGATCAGTGAGAAGGCTGCCGAGGTTATCATTGCAGATGCCGTATGA |
| Transcript | >Pro_DTO377G3_2|g8175.t1 ATGCGTTTTCCTGTGGTAGTTGGGCTATTTTCCACTCTTTCAATTGTCTCAGCTATTGATCATAGACCGGATCAT CGATATCATGATGCACACAGGAGGTCTTCGGATAACTCCACCACAGAATATGATTATGTTGTTGTTGGCTCTGGC GCCGGAGGTGGCCCTGTAGCGGCACGATTGGCCATTGCAGGCTACAAGGTTCTTCTTCTAGAAGCAGGAGATGAC CAGGGAAATGCGACTCAGCAAATTGTCCCCGCTCTGCAGCTCCAGTCCACCGAATACGAGCCGATGAGATGGGAT TATTTCGTGAATCACTACTCGAACTTGACTCGTCAGGAAGAAGACAGCAAAATGACTTACCGGACACCTGCTGGT GACCTCCATGTTGGAAGCAATGCGCCCAATGGGTCTGAACCTTTGGGAATTTTATACCCTCGAGCCGGTACTTTA GGTGGATGCTCTGCTCATAATGCCATGATCACGATCTACCCGTACGAGAATGACTGGGAGCAACTGGCCAGTCTC ACTGGCAATGATTCATGGTCTGCCTCGAATATGCGACAATACTTCGAGAGACTAGAGCGCAACCGATACCTTCCC AGCAGCATCATAGGCCACGGATTCGACGGATGGCTTACAACGAGCCTCACAGACCTGCGTCTTGTCATTGAAGAC CAAAAGCTTCTGTCCTTGATCCTGGCCGGTGCGACCGCCGCGGGTCAAACACTGCTGGGCAAACTGATCACTACG GTCACGGGCCTCGCCCGAGTTCTGCTGCGTGATCTTAACAACCCCCTTCCTTCGCGTGACTACGAGGAGGGTCCA TACCAAGTCCCTCTCGCCGTAGATGTCCCCGAATATAAGCGGACAGGTCCTCGAGAATTCCTCATGAAGACAGTC AATGCTGTAAACTCGGATGGTTCGCGAAAGTATCACCTTGATATCCAGTTGAACACCTTGGTAACCAAGCTCCGG TTCGATACCACCGGAGCGAAGCCACGGGCTACCGGTGTTGACTATCTTCGAGGACAGAGCCTCTACCGTGCAGAC CCCCGGGCTTCCCAGACATCGTCTAATGGAACACCGGGTAGCGTGAGTGCTTCTCGTGAAGTGATCCTGTCTGCA GGCTCATTCAACACCCCCCAGCTGCTGAAGCTGAGTGGTATTGGCCCAAAGGAGGAGTTGTCCAAATTTGGAATC TCAACCCTGGTGAATCTCCCCGGCGTCGGTCGTAATCTTCAGGATCGGTACGAAATAGGTACAGTGGGCAAGTCA CCCACCGATTTCGTCCTCACATCGAAGTGTACCTTTTTGTATTCTCTTCCCGACCCCTGTTTGGAACAGTATGAA AACAATCCTTTGTTCAAAGGTACATATACCACCAATGGAATCGCCATCGCCATCATTCGCAAGTCGTCTGTTGCA GAAGATGAGCCCGACCTACTGATCTCAGGAGCACCCGTCAACTTCCCCGGCTATTATCCCAACTACTCCTACGAG GGTCTCAAAGATGCCCAGCACTGGACCTGGATTACGTTAAAGTCGCGCTCTCGCAATAACGCTGGTACAGTTGAG TTGCGCTCTACCGACCCGCGTGACATGCCCCTTATCAACTTCCACTCGTTCGATACCGGAGTGACCACAGATGGT GCAGATGACAAGGACCTGCAGGCTGTATATGAAGCAATGCAGTTCTCCCGCACAATATTCGATGACCTTATTCCC CTTGATGGCGGGTTTGAAGAGGTCTGGCCGGGACCCAATGTCACTACTGAGAATGAACTGAAAGACTTCATTAAA AAAGAGGCATGGGGTCACCATGCCTGCTGTACTGCTGCAATTGGAGAAGATGGAGATCCTCAGGCTGTGTTGGAT GCGGACTTCCGTGTTCGTGGGGTTGACGGCTTGCGTGTTGTGGATGCTTCGGTCTTTCCTAAGATTCCAGGTTAC TATATCGCCCTACCCATCTATATGATCAGTGAGAAGGCTGCCGAGGTTATCATTGCAGATGCCGTATGA |
| Gene | >Pro_DTO377G3_2|g8175.t1 ATGCGTTTTCCTGTGGTAGTTGGGCTATTTTCCACTCTTTCAATTGTCTCAGCTATGTAGGTACACCTTCAGTCT CTACCTAGATCTTGTTGACACGGAAAACTAACATAATATAGTGATCATAGACCGGATCATCGATATCATGATGCA CACAGGAGGTCTTCGGATAACTCCACCACAGAATATGATTATGTTGTTGTTGGCTCTGGCGCCGGAGGTGGCCCT GTAGCGGCACGATTGGCCATTGCAGGCTACAAGGTTCTTCTTCTAGAAGCAGGAGATGACCAGGGAAATGCGACT CAGCAAATTGTCCCCGCTCTGCAGCTCCAGTCCACCGAATACGAGCCGATGAGATGGGATTATTTCGTGAATCAC TACTCGAACTTGACTCGTCAGGAAGAAGACAGCAAAATGACTTACCGGACACCTGCTGGTGACCTCCATGTTGGA AGCAATGCGCCCAATGGGTCTGAACCTTTGGGAATTTTATACCCTCGAGCCGGTACTTTAGGTGGATGCTCTGCT CATAATGCCATGATGTGAGCCATATCTTCTCCGCATGTCTATCGGATGTATCTGTCATATACTGACCAGTATCTT TATAGCACGATCTACCCGTACGAGAATGACTGGGAGCAACTGGCCAGTCTCACTGGCAATGATTCATGGTCTGCC TCGAATATGCGACAATACTTCGAGAGACTAGAGCGCAACCGATACCTTCCCAGCAGCATCATAGGCCACGGATTC GACGGATGGCTTACAACGAGCCTCACAGACCTGCGTCTTGTCATTGAAGACCAAAAGCTTCTGTCCTTGATCCTG GCCGGTGCGACCGCCGCGGGTCAAACACTGCTGGGCAAACTGATCACTACGGTCACGGGCCTCGCCCGAGTTCTG CTGCGTGATCTTAACAACCCCCTTCCTTCGCGTGACTACGAGGAGGGTCCATACCAAGTCCCTCTCGCCGTAGAT GTCCCCGAATATAAGCGGACAGGTCCTCGAGAATTCCTCATGAAGACAGTCAATGCTGTAAACTCGGATGGTTCG CGAAAGTATCACCTTGATATCCAGTTGAACACCTTGGTAACCAAGCTCCGGTTCGATACCACCGGAGCGAAGCCA CGGGCTACCGGTGTTGACTATCTTCGAGGACAGAGCCTCTACCGTGCAGACCCCCGGGCTTCCCAGACATCGTCT AATGGAACACCGGGTAGCGTGAGTGCTTCTCGTGAAGTGATCCTGTCTGCAGGCTCATTCAACACCCCCCAGCTG CTGAAGCTGAGTGGTATTGGCCCAAAGGAGGAGTTGTCCAAATTTGGAATCTCAACCCTGGTGAATCTCCCCGGC GTCGGTCGTAATCTTCAGGATCGGTACGAAATAGGTACAGTGGGCAAGTCACCCACCGATTTCGTCCTCACATCG AAGTGTACCTTTTTGTATTCTCTTCCCGACCCCTGTTTGGAACAGTATGAAAACAATCCTTTGTTCAAAGGTACA TATACCACCAATGGAATCGCCATCGCCATCATTCGCAAGTCGTCTGTTGCAGAAGATGAGCCCGACCTACTGATC TCAGGAGCACCCGTCAACTTCCCCGGCTATTATCCCAACTACTCCTACGAGGGTCTCAAAGATGCCCAGCACTGG ACCTGGATTACGTTAAAGTCGCGCTCTCGCAATAACGCTGGTACAGTTGAGTTGCGCTCTACCGACCCGCGTGAC ATGCCCCTTATCAACTTCCACTCGTTCGATACCGGAGTGACCACAGATGGTGCAGATGACAAGGACCTGCAGGCT GTATATGAAGCAATGCAGTTCTCCCGCACAATATTCGATGACCTTATTCCCCTTGATGGCGGGTTTGAAGAGGTC TGGCCGGGACCCAATGTCACTACTGAGAATGAACTGAAAGACTTCATTAAAAAAGAGGCATGGGGTCACCATGCC TGCTGTACTGCTGCAATTGGAGAAGATGGAGATCCTCAGGCTGTGTTGGATGCGGACTTCCGTGTTCGTGGGGTT GACGGCTTGCGTGTTGTGGATGCTTCGGTCTTTCCTAAGATTCCAGGTTACTATATCGCCCTACCCATCTATATG ATCAGTGAGAAGGCTGCCGAGGTTATCATTGCAGATGCCGTATGA |