© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8162.t1 |
| Gene name | |
| Location | scaffold_29:269173..270466 |
| Strand | - |
| Gene length (bp) | 1293 |
| Transcript length (bp) | 1293 |
| Coding sequence length (bp) | 1293 |
| Protein length (aa) | 431 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00501 | AMP-binding | AMP-binding enzyme | 4.5E-30 | 227 | 429 |
| PF00668 | Condensation | Condensation domain | 3.5E-09 | 14 | 208 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 39.74 | 22.54 | 56.93 |
| 5d_25C | Five days - 25 degrees Celsius | 31.40 | 16.99 | 45.81 |
| 7d_25C | Seven days - 25 degrees Celsius | 23.02 | 11.53 | 34.50 |
| 10d_25C | Ten days - 25 degrees Celsius | 19.63 | 9.47 | 29.79 |
| 7d_15C | Seven days - 15 degrees Celsius | 30.82 | 16.29 | 45.34 |
| 7d_30C | Seven days - 30 degrees Celsius | 25.11 | 12.86 | 37.37 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.397505 | no |
| 3d_25C | 7d_25C | 0.028871 | yes |
| 3d_25C | 7d_15C | 0.365664 | no |
| 3d_25C | 7d_30C | 0.064169 | no |
| 3d_25C | 10d_25C | 0.004450 | yes |
| 5d_25C | 7d_25C | 0.280671 | no |
| 5d_25C | 7d_15C | 0.965663 | no |
| 5d_25C | 7d_30C | 0.472259 | no |
| 5d_25C | 10d_25C | 0.082771 | no |
| 7d_25C | 7d_15C | 0.328861 | no |
| 7d_25C | 7d_30C | 0.825241 | no |
| 7d_25C | 10d_25C | 0.663833 | no |
| 7d_15C | 7d_30C | 0.524325 | no |
| 7d_15C | 10d_25C | 0.106607 | no |
| 7d_30C | 10d_25C | 0.441553 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8162.t1 MIGQKNAETSVYGDVSLLSQAKEFAHEHQVSVKVVLLAGWAVNFSRHLQSDDVAFYTNLRDCSFDTEYIVGPMDV TAPLRIQPLENESTLEALYRLESEKRTVSQSSYVGGSAIREYSQSQASLTSMFTVRESEIPMHKVEALDVTTETT LNWPTGQLSLVHDSSYSSARAKIILQHFWEVLQQIISSPYDRFKSLSLTSEQEKSSLLSFRSSRGNVSPQVGHNL IEKQTRDNGDAPALQFQLSEFMSFAKLNAAANRVAHRLTGLMSTGTIVPVHMDVSVQFVIVLLAILKAGGAYVIL DHFQPPSRKAYILNDVKAPFYMKNGGPIKGIADVLAYSITDLMHGSTPDAEIDLGLSLDPEQPAYIIYTSGSTGV LKGVVLSHRAASTGILCAPDISNNRSLLFYNPIFSAAQRTILSTLAKGGCLCLAS* |
| Coding | >Pro_DTO377G3_2|g8162.t1 ATGATTGGACAGAAGAACGCTGAAACGAGTGTATACGGCGATGTTAGCCTTCTCTCTCAAGCAAAGGAGTTTGCA CACGAGCATCAAGTTAGCGTCAAAGTGGTGCTCCTTGCCGGCTGGGCTGTCAACTTTTCCCGCCATCTGCAGAGC GATGATGTGGCCTTTTATACCAACCTTCGGGATTGCAGCTTTGACACAGAATATATCGTTGGTCCTATGGACGTG ACCGCTCCTCTTCGAATTCAACCTTTGGAGAACGAGTCCACACTCGAAGCTCTCTATAGATTGGAAAGCGAAAAG AGAACTGTTTCTCAATCTTCCTATGTGGGAGGAAGCGCCATCAGGGAGTACAGCCAAAGCCAAGCCTCCCTGACG TCCATGTTCACTGTTCGTGAATCAGAGATCCCCATGCACAAAGTTGAGGCCCTCGATGTTACCACAGAAACAACA CTCAACTGGCCAACTGGCCAACTCTCCCTGGTCCATGACTCGAGTTACTCATCGGCCCGAGCCAAGATCATTTTG CAGCACTTCTGGGAAGTCCTCCAGCAGATCATCTCGAGTCCATACGACCGATTCAAGAGTTTGAGTCTCACGTCC GAGCAAGAGAAAAGCTCCCTGTTGAGCTTCAGGTCTTCCCGTGGAAACGTCTCCCCTCAGGTGGGGCATAACCTG ATTGAGAAACAAACTCGTGATAATGGAGATGCTCCAGCTCTACAGTTTCAACTTAGCGAATTCATGAGCTTTGCT AAGCTGAATGCTGCTGCGAACCGTGTCGCTCATCGTCTCACTGGGTTGATGTCGACAGGGACCATCGTTCCGGTT CACATGGATGTATCCGTCCAGTTCGTGATTGTTCTCCTGGCTATTCTGAAGGCGGGAGGTGCCTATGTGATTCTT GATCACTTCCAGCCACCATCTCGCAAAGCATACATTCTCAACGATGTCAAAGCACCATTCTACATGAAAAATGGG GGCCCTATCAAAGGGATTGCAGATGTGCTGGCTTACTCAATTACGGATCTCATGCATGGTTCCACCCCCGATGCG GAAATCGATTTGGGCTTATCTCTGGACCCTGAGCAGCCTGCATATATCATTTATACCTCGGGGTCTACCGGTGTT CTCAAGGGCGTGGTCTTGAGTCACCGCGCGGCTTCCACTGGGATCCTCTGTGCTCCAGATATATCCAACAACCGC AGCCTGCTTTTCTACAATCCCATCTTCTCAGCAGCCCAGAGAACCATTCTGTCTACTCTAGCCAAGGGTGGCTGT CTCTGCCTGGCAAGTTGA |
| Transcript | >Pro_DTO377G3_2|g8162.t1 ATGATTGGACAGAAGAACGCTGAAACGAGTGTATACGGCGATGTTAGCCTTCTCTCTCAAGCAAAGGAGTTTGCA CACGAGCATCAAGTTAGCGTCAAAGTGGTGCTCCTTGCCGGCTGGGCTGTCAACTTTTCCCGCCATCTGCAGAGC GATGATGTGGCCTTTTATACCAACCTTCGGGATTGCAGCTTTGACACAGAATATATCGTTGGTCCTATGGACGTG ACCGCTCCTCTTCGAATTCAACCTTTGGAGAACGAGTCCACACTCGAAGCTCTCTATAGATTGGAAAGCGAAAAG AGAACTGTTTCTCAATCTTCCTATGTGGGAGGAAGCGCCATCAGGGAGTACAGCCAAAGCCAAGCCTCCCTGACG TCCATGTTCACTGTTCGTGAATCAGAGATCCCCATGCACAAAGTTGAGGCCCTCGATGTTACCACAGAAACAACA CTCAACTGGCCAACTGGCCAACTCTCCCTGGTCCATGACTCGAGTTACTCATCGGCCCGAGCCAAGATCATTTTG CAGCACTTCTGGGAAGTCCTCCAGCAGATCATCTCGAGTCCATACGACCGATTCAAGAGTTTGAGTCTCACGTCC GAGCAAGAGAAAAGCTCCCTGTTGAGCTTCAGGTCTTCCCGTGGAAACGTCTCCCCTCAGGTGGGGCATAACCTG ATTGAGAAACAAACTCGTGATAATGGAGATGCTCCAGCTCTACAGTTTCAACTTAGCGAATTCATGAGCTTTGCT AAGCTGAATGCTGCTGCGAACCGTGTCGCTCATCGTCTCACTGGGTTGATGTCGACAGGGACCATCGTTCCGGTT CACATGGATGTATCCGTCCAGTTCGTGATTGTTCTCCTGGCTATTCTGAAGGCGGGAGGTGCCTATGTGATTCTT GATCACTTCCAGCCACCATCTCGCAAAGCATACATTCTCAACGATGTCAAAGCACCATTCTACATGAAAAATGGG GGCCCTATCAAAGGGATTGCAGATGTGCTGGCTTACTCAATTACGGATCTCATGCATGGTTCCACCCCCGATGCG GAAATCGATTTGGGCTTATCTCTGGACCCTGAGCAGCCTGCATATATCATTTATACCTCGGGGTCTACCGGTGTT CTCAAGGGCGTGGTCTTGAGTCACCGCGCGGCTTCCACTGGGATCCTCTGTGCTCCAGATATATCCAACAACCGC AGCCTGCTTTTCTACAATCCCATCTTCTCAGCAGCCCAGAGAACCATTCTGTCTACTCTAGCCAAGGGTGGCTGT CTCTGCCTGGCAAGTTGA |
| Gene | >Pro_DTO377G3_2|g8162.t1 ATGATTGGACAGAAGAACGCTGAAACGAGTGTATACGGCGATGTTAGCCTTCTCTCTCAAGCAAAGGAGTTTGCA CACGAGCATCAAGTTAGCGTCAAAGTGGTGCTCCTTGCCGGCTGGGCTGTCAACTTTTCCCGCCATCTGCAGAGC GATGATGTGGCCTTTTATACCAACCTTCGGGATTGCAGCTTTGACACAGAATATATCGTTGGTCCTATGGACGTG ACCGCTCCTCTTCGAATTCAACCTTTGGAGAACGAGTCCACACTCGAAGCTCTCTATAGATTGGAAAGCGAAAAG AGAACTGTTTCTCAATCTTCCTATGTGGGAGGAAGCGCCATCAGGGAGTACAGCCAAAGCCAAGCCTCCCTGACG TCCATGTTCACTGTTCGTGAATCAGAGATCCCCATGCACAAAGTTGAGGCCCTCGATGTTACCACAGAAACAACA CTCAACTGGCCAACTGGCCAACTCTCCCTGGTCCATGACTCGAGTTACTCATCGGCCCGAGCCAAGATCATTTTG CAGCACTTCTGGGAAGTCCTCCAGCAGATCATCTCGAGTCCATACGACCGATTCAAGAGTTTGAGTCTCACGTCC GAGCAAGAGAAAAGCTCCCTGTTGAGCTTCAGGTCTTCCCGTGGAAACGTCTCCCCTCAGGTGGGGCATAACCTG ATTGAGAAACAAACTCGTGATAATGGAGATGCTCCAGCTCTACAGTTTCAACTTAGCGAATTCATGAGCTTTGCT AAGCTGAATGCTGCTGCGAACCGTGTCGCTCATCGTCTCACTGGGTTGATGTCGACAGGGACCATCGTTCCGGTT CACATGGATGTATCCGTCCAGTTCGTGATTGTTCTCCTGGCTATTCTGAAGGCGGGAGGTGCCTATGTGATTCTT GATCACTTCCAGCCACCATCTCGCAAAGCATACATTCTCAACGATGTCAAAGCACCATTCTACATGAAAAATGGG GGCCCTATCAAAGGGATTGCAGATGTGCTGGCTTACTCAATTACGGATCTCATGCATGGTTCCACCCCCGATGCG GAAATCGATTTGGGCTTATCTCTGGACCCTGAGCAGCCTGCATATATCATTTATACCTCGGGGTCTACCGGTGTT CTCAAGGGCGTGGTCTTGAGTCACCGCGCGGCTTCCACTGGGATCCTCTGTGCTCCAGATATATCCAACAACCGC AGCCTGCTTTTCTACAATCCCATCTTCTCAGCAGCCCAGAGAACCATTCTGTCTACTCTAGCCAAGGGTGGCTGT CTCTGCCTGGCAAGTTGA |