© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8157.t1 |
| Gene name | |
| Location | scaffold_29:256493..258499 |
| Strand | + |
| Gene length (bp) | 2006 |
| Transcript length (bp) | 1692 |
| Coding sequence length (bp) | 1692 |
| Protein length (aa) | 564 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 1.6E-99 | 57 | 513 |
| PF13520 | AA_permease_2 | Amino acid permease | 3.4E-25 | 55 | 485 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 57 | 79 | 22 |
| 2 | 84 | 106 | 22 |
| 3 | 127 | 149 | 22 |
| 4 | 164 | 186 | 22 |
| 5 | 198 | 220 | 22 |
| 6 | 247 | 269 | 22 |
| 7 | 282 | 299 | 17 |
| 8 | 332 | 354 | 22 |
| 9 | 381 | 398 | 17 |
| 10 | 408 | 430 | 22 |
| 11 | 458 | 477 | 19 |
| 12 | 487 | 509 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.29 | 0.00 | 0.66 |
| 5d_25C | Five days - 25 degrees Celsius | 0.34 | 0.00 | 0.75 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.40 | 0.00 | 0.90 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.17 | 0.00 | 0.45 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.75 | 0.00 | 1.50 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.12 | 0.06 | 2.19 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 0.173659 | no |
| 3d_25C | 7d_30C | 0.049382 | yes |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 0.245421 | no |
| 5d_25C | 7d_30C | 0.072166 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.361608 | no |
| 7d_25C | 7d_30C | 0.095723 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.543309 | no |
| 7d_15C | 10d_25C | 0.108807 | no |
| 7d_30C | 10d_25C | 0.056706 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8157.t1 MNQSSMQTSKDAIELKTNETNDIERSASSGTEHHGNTLVLSASDDAGYHRSLTRRQIMMMTFGAGIGTGLWVGTG QALHYAGPAGIAITYTITAMIVYAQYSSIGEMTTYKPIHGGFIRQCAEYVDPAFGFAIGVNFWFAWVMIIPAEIT AAISVLKYWPQTDVVPLAGFITIFLVVFAIANMFHVRVYGYIEYYMSFVKCIAVILMIFFMFIMTSGGIAATNGP IEFRYWKNPGAFNNGIKGISKAFVQAAFSFGGGEHIAVIAGEVADPRRTIKKTVRPVFWRMFTFFVVNIWLVGMC VPSNDVDLVNASGTMGSPFVIAVKRADVYGLAHAINGFIFLSVISCGITSVYIASRSLTALADLQIIHPFFGRKD SQGRPYVSLLISLGLGGGLGYLNCNSVGTLVYSWFSALVAIATLFQWGSIYIAHLRFRQGLRAQNKDLSALPFKG LLTPWAQYFSLLIVAFVFGCEFYLACWPFGEKGSVKSFFSSYLAAPLFVFDYFVYKWYFKTKIVKPVDMDFGPAR AFDEQDLINAIATEDAERNPENDMQKTWRKRAQYAVFG* |
| Coding | >Pro_DTO377G3_2|g8157.t1 ATGAACCAATCTTCAATGCAAACCTCGAAGGACGCAATTGAGCTCAAGACAAACGAGACAAATGACATCGAACGC TCAGCCAGCTCAGGAACTGAGCATCATGGCAATACTCTCGTCCTATCTGCGTCGGACGATGCTGGGTACCACCGT TCCTTGACGAGGCGCCAGATCATGATGATGACCTTTGGAGCTGGTATCGGCACTGGTCTATGGGTGGGAACTGGA CAAGCATTGCACTATGCCGGCCCTGCCGGTATAGCAATCACCTATACGATCACAGCGATGATCGTGTACGCCCAA TACTCTTCAATCGGCGAGATGACTACATACAAGCCTATTCATGGTGGCTTTATCCGACAATGCGCTGAATATGTG GACCCCGCATTCGGCTTTGCGATTGGTGTCAACTTCTGGTTTGCGTGGGTGATGATCATCCCAGCAGAGATAACA GCAGCGATATCCGTCCTGAAATACTGGCCACAGACAGACGTTGTGCCACTCGCGGGATTTATCACTATATTTCTG GTAGTCTTTGCCATCGCAAACATGTTCCACGTCCGAGTCTACGGCTACATCGAATATTACATGTCCTTTGTGAAG TGTATTGCAGTTATCTTGATGATATTCTTCATGTTCATCATGACATCGGGCGGAATAGCAGCAACAAACGGACCA ATCGAGTTCCGATACTGGAAGAACCCCGGTGCTTTCAATAATGGAATAAAGGGCATTTCCAAGGCTTTCGTGCAG GCGGCCTTCAGTTTCGGCGGCGGCGAGCACATCGCTGTTATAGCCGGCGAGGTAGCCGATCCCCGTCGCACTATC AAAAAGACAGTTCGACCCGTTTTCTGGAGAATGTTTACCTTCTTCGTGGTTAACATCTGGCTCGTCGGAATGTGT GTTCCCTCCAATGATGTGGATCTTGTTAACGCCAGCGGGACTATGGGAAGCCCCTTTGTCATTGCAGTCAAGCGG GCGGATGTTTACGGTCTCGCACACGCCATCAACGGGTTCATCTTCCTTAGTGTCATTAGCTGTGGCATTACTAGT GTTTACATCGCAAGTCGAAGTTTGACAGCACTAGCTGACCTGCAGATCATTCATCCATTCTTCGGAAGAAAGGAC TCGCAGGGTCGACCCTATGTGTCCCTGTTGATCAGTTTGGGCCTTGGTGGTGGGCTAGGCTATCTCAACTGCAAC AGTGTGGGCACTTTGGTGTATAGTTGGTTTTCGGCCTTGGTGGCTATAGCGACGCTTTTCCAATGGGGCTCGATT TATATTGCTCATCTTCGCTTCCGGCAAGGACTTCGAGCGCAAAACAAGGATCTCAGCGCACTTCCGTTCAAAGGT CTTCTCACTCCATGGGCGCAATACTTTAGTCTCCTTATTGTGGCGTTTGTCTTCGGTTGTGAATTCTACCTGGCT TGCTGGCCATTTGGAGAAAAGGGTTCGGTGAAGAGCTTCTTCTCTTCTTATCTCGCGGCTCCGTTGTTCGTCTTT GATTACTTCGTATACAAGTGGTATTTCAAAACGAAGATAGTCAAGCCGGTTGACATGGATTTCGGCCCTGCCAGA GCCTTCGATGAACAAGACCTTATCAATGCTATTGCGACCGAAGATGCGGAGCGGAATCCAGAGAATGACATGCAG AAGACTTGGAGAAAACGTGCTCAGTATGCGGTGTTTGGATAA |
| Transcript | >Pro_DTO377G3_2|g8157.t1 ATGAACCAATCTTCAATGCAAACCTCGAAGGACGCAATTGAGCTCAAGACAAACGAGACAAATGACATCGAACGC TCAGCCAGCTCAGGAACTGAGCATCATGGCAATACTCTCGTCCTATCTGCGTCGGACGATGCTGGGTACCACCGT TCCTTGACGAGGCGCCAGATCATGATGATGACCTTTGGAGCTGGTATCGGCACTGGTCTATGGGTGGGAACTGGA CAAGCATTGCACTATGCCGGCCCTGCCGGTATAGCAATCACCTATACGATCACAGCGATGATCGTGTACGCCCAA TACTCTTCAATCGGCGAGATGACTACATACAAGCCTATTCATGGTGGCTTTATCCGACAATGCGCTGAATATGTG GACCCCGCATTCGGCTTTGCGATTGGTGTCAACTTCTGGTTTGCGTGGGTGATGATCATCCCAGCAGAGATAACA GCAGCGATATCCGTCCTGAAATACTGGCCACAGACAGACGTTGTGCCACTCGCGGGATTTATCACTATATTTCTG GTAGTCTTTGCCATCGCAAACATGTTCCACGTCCGAGTCTACGGCTACATCGAATATTACATGTCCTTTGTGAAG TGTATTGCAGTTATCTTGATGATATTCTTCATGTTCATCATGACATCGGGCGGAATAGCAGCAACAAACGGACCA ATCGAGTTCCGATACTGGAAGAACCCCGGTGCTTTCAATAATGGAATAAAGGGCATTTCCAAGGCTTTCGTGCAG GCGGCCTTCAGTTTCGGCGGCGGCGAGCACATCGCTGTTATAGCCGGCGAGGTAGCCGATCCCCGTCGCACTATC AAAAAGACAGTTCGACCCGTTTTCTGGAGAATGTTTACCTTCTTCGTGGTTAACATCTGGCTCGTCGGAATGTGT GTTCCCTCCAATGATGTGGATCTTGTTAACGCCAGCGGGACTATGGGAAGCCCCTTTGTCATTGCAGTCAAGCGG GCGGATGTTTACGGTCTCGCACACGCCATCAACGGGTTCATCTTCCTTAGTGTCATTAGCTGTGGCATTACTAGT GTTTACATCGCAAGTCGAAGTTTGACAGCACTAGCTGACCTGCAGATCATTCATCCATTCTTCGGAAGAAAGGAC TCGCAGGGTCGACCCTATGTGTCCCTGTTGATCAGTTTGGGCCTTGGTGGTGGGCTAGGCTATCTCAACTGCAAC AGTGTGGGCACTTTGGTGTATAGTTGGTTTTCGGCCTTGGTGGCTATAGCGACGCTTTTCCAATGGGGCTCGATT TATATTGCTCATCTTCGCTTCCGGCAAGGACTTCGAGCGCAAAACAAGGATCTCAGCGCACTTCCGTTCAAAGGT CTTCTCACTCCATGGGCGCAATACTTTAGTCTCCTTATTGTGGCGTTTGTCTTCGGTTGTGAATTCTACCTGGCT TGCTGGCCATTTGGAGAAAAGGGTTCGGTGAAGAGCTTCTTCTCTTCTTATCTCGCGGCTCCGTTGTTCGTCTTT GATTACTTCGTATACAAGTGGTATTTCAAAACGAAGATAGTCAAGCCGGTTGACATGGATTTCGGCCCTGCCAGA GCCTTCGATGAACAAGACCTTATCAATGCTATTGCGACCGAAGATGCGGAGCGGAATCCAGAGAATGACATGCAG AAGACTTGGAGAAAACGTGCTCAGTATGCGGTGTTTGGATAA |
| Gene | >Pro_DTO377G3_2|g8157.t1 ATGAACCAATCTTCAATGCAAACCTCGAAGGACGCAATTGAGCTCAAGACAAACGAGACAAATGACATCGAACGC TCAGCCAGCTCAGGAACTGAGCATCATGGCAATACTCTCGTCCTATCTGCGTCGGACGATGCTGGGTACCACCGT TCCTTGACGAGGCGCCAGATCATGATGATGACCTTTGGAGCTGGTATCGGCACTGGTCTATGGGTGGGAACTGGA CAAGCATTGCACTATGGTGAGAGTTGAAACCCCGATATTTCCCTCAAGACATATATTGACATTGAATAGCCGGCC CTGCCGGTATAGCAATCACCTATACGATCACAGCGTAGGGTACTCCAGAAAAATCTGGTCTTGTGCTCTTGTAAC TAACACCATCTGTAGGATGATCGTGTACGCCCAATACTCTTCAATCGGCGAGATGACTACATACAAGCCTATTCA TGGTGGCTTTATCCGACAATGCGCTGAATATGTGGACCCCGCATTCGGCTTTGCGATTGGTGTCAACTTCTGGTT TGCGGTATGTCAGCCTACTAGAACATCAAGGTCGTATGTACTTACGCGGATGAAGTGGGTGATGATCATCCCAGC AGAGATAACAGCAGCGATATCCGTCCTGAAATACTGGCCACAGACAGACGTTGTGCCACTCGCGGGATTTATCAC TATATTTCTGGTAGTCTTTGCCATCGCAAACATGTTCCACGTCCGAGTCTACGGCTACATCGAATATTACATGTC CTTTGTGAAGTGTATTGCAGTTATCTTGATGATATTCTTCATGTTCATCATGACATCGGGCGGAATAGCAGCAAC AAACGGACCAATCGAGTTCCGATACTGGAAGAACCCCGGTGCTTTCAATAATGGAATAAAGGGCATTTCCAAGGC TTTCGTGCAGGCGGCCTTCAGTTTCGGCGGCGGTATGAGATCCGAGCGCGAATCGAGGAAAATGTACTGACTCAA GTTAGGCGAGCACATCGCTGTTATAGCCGGCGAGGTAGCCGATCCCCGTCGCACTATCAAAAAGACAGTTCGACC CGTTTTCTGGAGAATGTTTACCTTCTTCGTGGTTAACATCTGGCTCGTCGGAATGTGTGTTCCCTCCAATGATGT GGATCTTGTTAACGCCAGCGGGACTATGGGAAGCCCCTTTGTCATTGCAGTCAAGCGGGCGGATGTTTACGGTCT CGCACACGCCATCAACGGGTTCATCTTCCTTAGTGTCATTAGCTGTGGCATTACTAGTGTTTACATCGCAAGTCG AAGTTTGACAGCACTAGCTGACCTGCAGATCATTCATCCATTCTTCGGAAGAAAGGACTCGCAGGGTCGACCCTA TGTGTCCCTGTTGATCAGTTTGGGCCTTGGTGGTGGGCTAGGCTATCTCAACTGCAACAGTGTGGGCACTTTGGT GTATAGTTGGTTTTCGGCCTTGGTAAGTACATCGGCAAAAGGGATAATATGTGAAGTTGCTGACAACTTGAATTT AGGTGGCTATAGCGACGCTTTTCCAATGGGGCTCGATTTATATTGCTCATCTTCGCTTCCGGCAAGGACTTCGAG CGCAAAACAAGGATCTCAGCGCACTTCCGTTCAAAGGTCTTCTCACTCCATGGGCGCAATACTTTAGTCTCCTTA TTGTGGCGTTTGTCTTCGGTTGTGAATTCTACCTGGCTTGCTGGCCATTTGGAGAAAAGGGTTCGGTGAAGAGCT TCTTCTCTTCTTATCTCGCGGCTCCGTTGTTCGTCTTTGATTACTTCGTATACAAGGTGAGTGCTTCAAAATTGT GGTTGACGATGGAAAATGTCTGACTTTGACAGTGGTATTTCAAAACGAAGATAGTCAAGCCGGTTGACATGGATT TCGGCCCTGCCAGAGCCTTCGATGAACAAGACCTTATCAATGCTATTGCGACCGAAGATGCGGAGCGGAATCCAG AGAATGACATGCAGAAGACTTGGAGAAAACGTGCTCAGTATGCGGTGTTTGGATAA |