Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8151.t1
Gene name
Locationscaffold_29:232928..234900
Strand-
Gene length (bp)1972
Transcript length (bp)960
Coding sequence length (bp)960
Protein length (aa) 320

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.45

Transmembrane Domains

Domain # Start End Length
1 66 88 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 4.10 0.85 7.36
5d_25C Five days - 25 degrees Celsius 3.60 0.71 6.50
7d_25C Seven days - 25 degrees Celsius 3.96 0.87 7.04
10d_25C Ten days - 25 degrees Celsius 2.92 0.40 5.44
7d_15C Seven days - 15 degrees Celsius 4.25 0.93 7.58
7d_30C Seven days - 30 degrees Celsius 5.37 1.30 9.43

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.838058 no
3d_25C 7d_25C 0.961156 no
3d_25C 7d_15C 0.960559 no
3d_25C 7d_30C 0.632307 no
3d_25C 10d_25C 0.550356 no
5d_25C 7d_25C 0.887254 no
5d_25C 7d_15C 0.782165 no
5d_25C 7d_30C 0.425523 no
5d_25C 10d_25C 0.734146 no
7d_25C 7d_15C 0.915219 no
7d_25C 7d_30C 0.567622 no
7d_25C 10d_25C 0.600647 no
7d_15C 7d_30C 0.686005 no
7d_15C 10d_25C 0.504261 no
7d_30C 10d_25C 0.226177 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8151.t1
MEAINASDEKTMELSKDLDLEANTRLEYDPWLLDDHPLRSYPTECIPGLSLYLDEYYESIGKRRALLFRAGCLIL
GCLVAFQCLRWLPIHITRTGPHHAHLHPQSGACTFPTLDTRPQALESSFNEGCDGLRTAVWMHNGELQIGDAGVE
TEHEHVLQRLGLDPLMEKVAENDATARASVDPGMSGSFHPGRARTFFLVLEARTSLDELYPRLVEQLDTLRQRGY
LSHWDGQNVVPRHLTVVVTGEAFSGSDCVHHSYSDVFWSLPGPFMITKDGLHLSPRLSRRADLISSTVQRARRVQ
DSHGPGQVPKHLIDEVIIS*
Coding >Pro_DTO377G3_2|g8151.t1
ATGGAAGCTATCAATGCATCGGACGAGAAGACTATGGAGCTCTCAAAGGATTTAGACCTTGAGGCCAACACACGA
TTAGAATACGACCCATGGCTTCTCGACGACCATCCCCTACGATCGTACCCGACAGAGTGCATCCCAGGCCTGTCA
CTTTACCTCGACGAATACTACGAGTCCATTGGAAAGCGAAGGGCGCTTCTTTTTCGCGCGGGATGCCTTATCCTC
GGATGCCTAGTCGCATTCCAATGTCTCCGATGGCTCCCAATCCATATCACACGCACGGGCCCACACCACGCGCAC
CTTCACCCCCAGAGTGGCGCGTGTACATTTCCGACGCTAGACACGCGACCGCAGGCCCTCGAGTCGTCGTTCAAC
GAGGGATGCGATGGCCTCCGGACGGCGGTCTGGATGCACAACGGGGAGCTGCAGATTGGAGACGCCGGTGTGGAG
ACTGAGCACGAGCACGTCCTGCAGAGACTCGGTCTCGACCCTCTTATGGAGAAAGTTGCTGAGAACGATGCCACC
GCCCGGGCATCCGTTGATCCTGGGATGTCAGGCAGCTTTCATCCTGGTCGGGCTCGGACTTTCTTTTTGGTGCTT
GAGGCTAGGACCTCGCTTGACGAATTGTACCCGCGTCTCGTTGAGCAACTCGATACTCTCCGGCAGAGGGGGTAT
TTGTCCCATTGGGATGGGCAGAATGTTGTTCCGCGCCATTTGACTGTGGTGGTTACGGGGGAGGCATTCTCTGGG
AGTGACTGTGTGCATCATTCTTATTCTGACGTGTTCTGGTCTTTACCGGGACCGTTTATGATTACTAAGGATGGC
CTCCATCTCTCGCCGCGGTTATCACGACGGGCAGACTTGATATCGTCGACGGTGCAACGAGCCAGGCGTGTGCAG
GATTCGCATGGACCAGGACAGGTGCCGAAGCACCTTATTGACGAGGTTATCATATCCTGA
Transcript >Pro_DTO377G3_2|g8151.t1
ATGGAAGCTATCAATGCATCGGACGAGAAGACTATGGAGCTCTCAAAGGATTTAGACCTTGAGGCCAACACACGA
TTAGAATACGACCCATGGCTTCTCGACGACCATCCCCTACGATCGTACCCGACAGAGTGCATCCCAGGCCTGTCA
CTTTACCTCGACGAATACTACGAGTCCATTGGAAAGCGAAGGGCGCTTCTTTTTCGCGCGGGATGCCTTATCCTC
GGATGCCTAGTCGCATTCCAATGTCTCCGATGGCTCCCAATCCATATCACACGCACGGGCCCACACCACGCGCAC
CTTCACCCCCAGAGTGGCGCGTGTACATTTCCGACGCTAGACACGCGACCGCAGGCCCTCGAGTCGTCGTTCAAC
GAGGGATGCGATGGCCTCCGGACGGCGGTCTGGATGCACAACGGGGAGCTGCAGATTGGAGACGCCGGTGTGGAG
ACTGAGCACGAGCACGTCCTGCAGAGACTCGGTCTCGACCCTCTTATGGAGAAAGTTGCTGAGAACGATGCCACC
GCCCGGGCATCCGTTGATCCTGGGATGTCAGGCAGCTTTCATCCTGGTCGGGCTCGGACTTTCTTTTTGGTGCTT
GAGGCTAGGACCTCGCTTGACGAATTGTACCCGCGTCTCGTTGAGCAACTCGATACTCTCCGGCAGAGGGGGTAT
TTGTCCCATTGGGATGGGCAGAATGTTGTTCCGCGCCATTTGACTGTGGTGGTTACGGGGGAGGCATTCTCTGGG
AGTGACTGTGTGCATCATTCTTATTCTGACGTGTTCTGGTCTTTACCGGGACCGTTTATGATTACTAAGGATGGC
CTCCATCTCTCGCCGCGGTTATCACGACGGGCAGACTTGATATCGTCGACGGTGCAACGAGCCAGGCGTGTGCAG
GATTCGCATGGACCAGGACAGGTGCCGAAGCACCTTATTGACGAGGTTATCATATCCTGA
Gene >Pro_DTO377G3_2|g8151.t1
ATGGAAGCTATCAATGCATCGGACGAGAAGACTATGGAGCTCTCAAAGGATTTAGACCTTGAGGCCAACACACGA
TTAGAATACGACCCATGGCTTCTCGACGACCATCCCCTACGATCGTACCCGACAGAGTGCATCCCAGGCCTGTCA
CTTTACCTCGACGAATACTACGAGTCCATTGGAAAGCGAAGGGCGCTTCTTTTTCGCGCGGGATGCCTTATCCTC
GGATGCCTGTGAGTGTTTCTGTCCCATCTCTGCTAGACAGCCAATCTGACACATTCCTCCCCAGAGTCGCATTCC
AATGTCTCCGATGGCTCCCAATCCATATCACACGCACGGGCCCACACCACGCGCACCTTCACCCCCAGAGTGGCG
CGTGTACATTTCCGACGCTAGACACGCGACCGCAGGCCCTCGAGTCGTCGTTCAACGAGGGATGCGATGGCCTCC
GGACGGCGGTCTGGATGCACAACGGGGAGCTGCAGATTGGAGACGCCGGTGTGGAGACTGAGCACGAGCACGTCC
TGCAGAGACTCGGTCTCGACCCTCTTATGGAGAAAGTTGCTGAGAACGATGCCACCGCCCGGGCATCCGTTGATC
CTGGGATGTCAGGCAGCTTTCATCCTGGTCGGGCTCGGACTTTCTTTTTGGTGCTTGAGGCTAGGACCTCGCTTG
ACGAATTGTACCCGCGTCTCGTTGAGCAACTCGATACTCTCCGGCAGAGGGGGTATTTGTCCCATTGGGATGGGC
AGAATGTTGTTCCGCGCCATTTGACTGTGGTGGTTACGGGGGAGGCATTCTCTGGGAGTGACTGTGTGCATCATT
CTTATTCTGACGTGTTCTGGTCTTTACCGGGACCGTTTATGATTACTAAGGATGGCCTCCATCTCTCGCCGGTAT
GTGTATAGTAGCGTAACCGTTGTTGACTGTGATACCCAATTTGAGTTTAATTTGATGTGCATGATATCATTATAT
CATTTCCAGGATTGATTATGTGCTTTAACTGTGTACACATCTATATCTCCACTGCAAACAGCGCAAGATCACAGC
ACAGAGGTCCACTTTAGCATCTTCTCAGATCTGGATCTAATTCGATTAGAGTAAATACCTCACGGCTCTAAATGA
AGCATAAATACGTGCATAGAAATGGAACTCCCCTTTATCCATCGGCTTTGCTCCGTCCAGGTCCCACCCAGAAGA
ACAATACCGGTGGTCCACGTGGGGCCTTTCATTTCCTCATCGGGACTAGCGGGCTCTTCTATGGAAAATTACAGT
TTTCTTTTTGTATTTCGCGTCTTCGTCTCGCTTTTTAAATATCCCCAGTCTATACGCCGTGTAGAATTTCAAATC
TACTTAAAAAGGAGAAAATAAGTCGCAAAATGATAAAAGTAGTCGCTATCTGCCTTCAAAATCAAGAAATAGATT
TTATTTTCTATTTTTAGGTGCATGTTATTCCTCGTCACCAACCGGTTTATTACCGGTTTATCACCGACCCGGTAG
TTAATTGACGCATTTCGATCGGTGCAGCGGGTAATTGGCGCAGGTAATCTATTCTTTTCGAGACAAGCGGGAACA
TCGTCAAAAACAAGCCCGCTAATCCTTGCCCGTTGTGTTGTTTTTCTCGGTGGGACCTGTACCTCGATGGGGCTC
CCGTGGGATGCCGGTGAGGATCCAGCAAGATGATCCACGGAAAAGCAGGAAACCCGAGATTTGAAGAGTTCACAT
CCACAGTTGGGTACCAATTGGCCACCCGATTGGACAAGATAAAGAAAAAAAACAACGCACAACATGGAGAACCCC
CCCGAGGGAATAAATACAATATACCAGCAGGCCCTAAGAACGGCAATGCCAGCGGTTATCACGACGGGCAGACTT
GATATCGTCGACGGTGCAACGAGCCAGGCGTGTGCAGGATTCGCATGGACCAGGACAGGTGCCGAAGCACCTTAT
TGACGAGGTTATCATATCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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