© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8151.t1 |
| Gene name | |
| Location | scaffold_29:232928..234900 |
| Strand | - |
| Gene length (bp) | 1972 |
| Transcript length (bp) | 960 |
| Coding sequence length (bp) | 960 |
| Protein length (aa) | 320 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 66 | 88 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.10 | 0.85 | 7.36 |
| 5d_25C | Five days - 25 degrees Celsius | 3.60 | 0.71 | 6.50 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.96 | 0.87 | 7.04 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.92 | 0.40 | 5.44 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.25 | 0.93 | 7.58 |
| 7d_30C | Seven days - 30 degrees Celsius | 5.37 | 1.30 | 9.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.838058 | no |
| 3d_25C | 7d_25C | 0.961156 | no |
| 3d_25C | 7d_15C | 0.960559 | no |
| 3d_25C | 7d_30C | 0.632307 | no |
| 3d_25C | 10d_25C | 0.550356 | no |
| 5d_25C | 7d_25C | 0.887254 | no |
| 5d_25C | 7d_15C | 0.782165 | no |
| 5d_25C | 7d_30C | 0.425523 | no |
| 5d_25C | 10d_25C | 0.734146 | no |
| 7d_25C | 7d_15C | 0.915219 | no |
| 7d_25C | 7d_30C | 0.567622 | no |
| 7d_25C | 10d_25C | 0.600647 | no |
| 7d_15C | 7d_30C | 0.686005 | no |
| 7d_15C | 10d_25C | 0.504261 | no |
| 7d_30C | 10d_25C | 0.226177 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8151.t1 MEAINASDEKTMELSKDLDLEANTRLEYDPWLLDDHPLRSYPTECIPGLSLYLDEYYESIGKRRALLFRAGCLIL GCLVAFQCLRWLPIHITRTGPHHAHLHPQSGACTFPTLDTRPQALESSFNEGCDGLRTAVWMHNGELQIGDAGVE TEHEHVLQRLGLDPLMEKVAENDATARASVDPGMSGSFHPGRARTFFLVLEARTSLDELYPRLVEQLDTLRQRGY LSHWDGQNVVPRHLTVVVTGEAFSGSDCVHHSYSDVFWSLPGPFMITKDGLHLSPRLSRRADLISSTVQRARRVQ DSHGPGQVPKHLIDEVIIS* |
| Coding | >Pro_DTO377G3_2|g8151.t1 ATGGAAGCTATCAATGCATCGGACGAGAAGACTATGGAGCTCTCAAAGGATTTAGACCTTGAGGCCAACACACGA TTAGAATACGACCCATGGCTTCTCGACGACCATCCCCTACGATCGTACCCGACAGAGTGCATCCCAGGCCTGTCA CTTTACCTCGACGAATACTACGAGTCCATTGGAAAGCGAAGGGCGCTTCTTTTTCGCGCGGGATGCCTTATCCTC GGATGCCTAGTCGCATTCCAATGTCTCCGATGGCTCCCAATCCATATCACACGCACGGGCCCACACCACGCGCAC CTTCACCCCCAGAGTGGCGCGTGTACATTTCCGACGCTAGACACGCGACCGCAGGCCCTCGAGTCGTCGTTCAAC GAGGGATGCGATGGCCTCCGGACGGCGGTCTGGATGCACAACGGGGAGCTGCAGATTGGAGACGCCGGTGTGGAG ACTGAGCACGAGCACGTCCTGCAGAGACTCGGTCTCGACCCTCTTATGGAGAAAGTTGCTGAGAACGATGCCACC GCCCGGGCATCCGTTGATCCTGGGATGTCAGGCAGCTTTCATCCTGGTCGGGCTCGGACTTTCTTTTTGGTGCTT GAGGCTAGGACCTCGCTTGACGAATTGTACCCGCGTCTCGTTGAGCAACTCGATACTCTCCGGCAGAGGGGGTAT TTGTCCCATTGGGATGGGCAGAATGTTGTTCCGCGCCATTTGACTGTGGTGGTTACGGGGGAGGCATTCTCTGGG AGTGACTGTGTGCATCATTCTTATTCTGACGTGTTCTGGTCTTTACCGGGACCGTTTATGATTACTAAGGATGGC CTCCATCTCTCGCCGCGGTTATCACGACGGGCAGACTTGATATCGTCGACGGTGCAACGAGCCAGGCGTGTGCAG GATTCGCATGGACCAGGACAGGTGCCGAAGCACCTTATTGACGAGGTTATCATATCCTGA |
| Transcript | >Pro_DTO377G3_2|g8151.t1 ATGGAAGCTATCAATGCATCGGACGAGAAGACTATGGAGCTCTCAAAGGATTTAGACCTTGAGGCCAACACACGA TTAGAATACGACCCATGGCTTCTCGACGACCATCCCCTACGATCGTACCCGACAGAGTGCATCCCAGGCCTGTCA CTTTACCTCGACGAATACTACGAGTCCATTGGAAAGCGAAGGGCGCTTCTTTTTCGCGCGGGATGCCTTATCCTC GGATGCCTAGTCGCATTCCAATGTCTCCGATGGCTCCCAATCCATATCACACGCACGGGCCCACACCACGCGCAC CTTCACCCCCAGAGTGGCGCGTGTACATTTCCGACGCTAGACACGCGACCGCAGGCCCTCGAGTCGTCGTTCAAC GAGGGATGCGATGGCCTCCGGACGGCGGTCTGGATGCACAACGGGGAGCTGCAGATTGGAGACGCCGGTGTGGAG ACTGAGCACGAGCACGTCCTGCAGAGACTCGGTCTCGACCCTCTTATGGAGAAAGTTGCTGAGAACGATGCCACC GCCCGGGCATCCGTTGATCCTGGGATGTCAGGCAGCTTTCATCCTGGTCGGGCTCGGACTTTCTTTTTGGTGCTT GAGGCTAGGACCTCGCTTGACGAATTGTACCCGCGTCTCGTTGAGCAACTCGATACTCTCCGGCAGAGGGGGTAT TTGTCCCATTGGGATGGGCAGAATGTTGTTCCGCGCCATTTGACTGTGGTGGTTACGGGGGAGGCATTCTCTGGG AGTGACTGTGTGCATCATTCTTATTCTGACGTGTTCTGGTCTTTACCGGGACCGTTTATGATTACTAAGGATGGC CTCCATCTCTCGCCGCGGTTATCACGACGGGCAGACTTGATATCGTCGACGGTGCAACGAGCCAGGCGTGTGCAG GATTCGCATGGACCAGGACAGGTGCCGAAGCACCTTATTGACGAGGTTATCATATCCTGA |
| Gene | >Pro_DTO377G3_2|g8151.t1 ATGGAAGCTATCAATGCATCGGACGAGAAGACTATGGAGCTCTCAAAGGATTTAGACCTTGAGGCCAACACACGA TTAGAATACGACCCATGGCTTCTCGACGACCATCCCCTACGATCGTACCCGACAGAGTGCATCCCAGGCCTGTCA CTTTACCTCGACGAATACTACGAGTCCATTGGAAAGCGAAGGGCGCTTCTTTTTCGCGCGGGATGCCTTATCCTC GGATGCCTGTGAGTGTTTCTGTCCCATCTCTGCTAGACAGCCAATCTGACACATTCCTCCCCAGAGTCGCATTCC AATGTCTCCGATGGCTCCCAATCCATATCACACGCACGGGCCCACACCACGCGCACCTTCACCCCCAGAGTGGCG CGTGTACATTTCCGACGCTAGACACGCGACCGCAGGCCCTCGAGTCGTCGTTCAACGAGGGATGCGATGGCCTCC GGACGGCGGTCTGGATGCACAACGGGGAGCTGCAGATTGGAGACGCCGGTGTGGAGACTGAGCACGAGCACGTCC TGCAGAGACTCGGTCTCGACCCTCTTATGGAGAAAGTTGCTGAGAACGATGCCACCGCCCGGGCATCCGTTGATC CTGGGATGTCAGGCAGCTTTCATCCTGGTCGGGCTCGGACTTTCTTTTTGGTGCTTGAGGCTAGGACCTCGCTTG ACGAATTGTACCCGCGTCTCGTTGAGCAACTCGATACTCTCCGGCAGAGGGGGTATTTGTCCCATTGGGATGGGC AGAATGTTGTTCCGCGCCATTTGACTGTGGTGGTTACGGGGGAGGCATTCTCTGGGAGTGACTGTGTGCATCATT CTTATTCTGACGTGTTCTGGTCTTTACCGGGACCGTTTATGATTACTAAGGATGGCCTCCATCTCTCGCCGGTAT GTGTATAGTAGCGTAACCGTTGTTGACTGTGATACCCAATTTGAGTTTAATTTGATGTGCATGATATCATTATAT CATTTCCAGGATTGATTATGTGCTTTAACTGTGTACACATCTATATCTCCACTGCAAACAGCGCAAGATCACAGC ACAGAGGTCCACTTTAGCATCTTCTCAGATCTGGATCTAATTCGATTAGAGTAAATACCTCACGGCTCTAAATGA AGCATAAATACGTGCATAGAAATGGAACTCCCCTTTATCCATCGGCTTTGCTCCGTCCAGGTCCCACCCAGAAGA ACAATACCGGTGGTCCACGTGGGGCCTTTCATTTCCTCATCGGGACTAGCGGGCTCTTCTATGGAAAATTACAGT TTTCTTTTTGTATTTCGCGTCTTCGTCTCGCTTTTTAAATATCCCCAGTCTATACGCCGTGTAGAATTTCAAATC TACTTAAAAAGGAGAAAATAAGTCGCAAAATGATAAAAGTAGTCGCTATCTGCCTTCAAAATCAAGAAATAGATT TTATTTTCTATTTTTAGGTGCATGTTATTCCTCGTCACCAACCGGTTTATTACCGGTTTATCACCGACCCGGTAG TTAATTGACGCATTTCGATCGGTGCAGCGGGTAATTGGCGCAGGTAATCTATTCTTTTCGAGACAAGCGGGAACA TCGTCAAAAACAAGCCCGCTAATCCTTGCCCGTTGTGTTGTTTTTCTCGGTGGGACCTGTACCTCGATGGGGCTC CCGTGGGATGCCGGTGAGGATCCAGCAAGATGATCCACGGAAAAGCAGGAAACCCGAGATTTGAAGAGTTCACAT CCACAGTTGGGTACCAATTGGCCACCCGATTGGACAAGATAAAGAAAAAAAACAACGCACAACATGGAGAACCCC CCCGAGGGAATAAATACAATATACCAGCAGGCCCTAAGAACGGCAATGCCAGCGGTTATCACGACGGGCAGACTT GATATCGTCGACGGTGCAACGAGCCAGGCGTGTGCAGGATTCGCATGGACCAGGACAGGTGCCGAAGCACCTTAT TGACGAGGTTATCATATCCTGA |