© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8135.t1 |
| Gene name | |
| Location | scaffold_29:192249..193533 |
| Strand | - |
| Gene length (bp) | 1284 |
| Transcript length (bp) | 1161 |
| Coding sequence length (bp) | 1161 |
| Protein length (aa) | 387 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00722 | Glyco_hydro_16 | Glycosyl hydrolases family 16 | 1.1E-07 | 135 | 230 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 110.46 | 67.66 | 153.26 |
| 5d_25C | Five days - 25 degrees Celsius | 45.59 | 25.50 | 65.69 |
| 7d_25C | Seven days - 25 degrees Celsius | 53.99 | 30.32 | 77.66 |
| 10d_25C | Ten days - 25 degrees Celsius | 21.01 | 9.41 | 32.61 |
| 7d_15C | Seven days - 15 degrees Celsius | 60.39 | 33.41 | 87.37 |
| 7d_30C | Seven days - 30 degrees Celsius | 26.59 | 13.52 | 39.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.007437 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.578221 | no |
| 5d_25C | 7d_15C | 0.299702 | no |
| 5d_25C | 7d_30C | 0.030001 | yes |
| 5d_25C | 10d_25C | 0.002761 | yes |
| 7d_25C | 7d_15C | 0.733623 | no |
| 7d_25C | 7d_30C | 0.001804 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.482157 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8135.t1 MRDDYTQNDPGGFQSSHVLHSKTAVGSAYPPAYGEWSGEATNTYSRWDPREWSLKKKIFLAAGIVVVIVAVVVGS VLGVRANRYPNYSKLDYSLKDEFSGSTFFDNFEYFTATDPTNGFVQYIDRAASEWLNLTYASDTSAVLKVDTTYS GSEAANGRQSVRVTSNNTYADGLFIFDIIHTPYGCGTWPALWLTDPSNWPEHGEIDVVEATNAGTFGSQSTLHTS KGCTMGVKRKESGTVDNENCYYEANDYAGCGVKGASSTYGPEFNSNGGGVYAMELRDAGIRVWQWVRSKIPSDIT SGSPDPSTWGKALADFPSTDCNIGSHFKNQSIIINISLCGDLAGATKYYTTQSSCPGNCTTFVRDNATSFDTAYW EFGGFKVYQTS* |
| Coding | >Pro_DTO377G3_2|g8135.t1 ATGCGCGACGATTATACTCAAAACGACCCTGGCGGCTTCCAATCAAGTCATGTGTTGCACAGTAAGACAGCAGTG GGCAGTGCATACCCGCCTGCCTACGGAGAGTGGAGCGGAGAAGCTACAAATACATACTCCAGATGGGACCCCCGG GAATGGTCCTTGAAGAAGAAGATTTTCCTAGCGGCCGGCATCGTGGTGGTAATCGTGGCTGTTGTCGTTGGCTCT GTCCTAGGAGTGCGAGCCAATCGGTACCCCAATTACTCGAAACTGGATTACAGCTTGAAAGACGAATTTTCGGGA TCGACCTTCTTCGACAACTTCGAATATTTTACCGCCACCGACCCAACCAATGGATTTGTCCAGTATATCGACCGA GCTGCATCCGAATGGCTTAATCTAACATACGCCTCGGACACCTCCGCGGTGCTCAAGGTGGACACGACATACAGT GGATCGGAGGCTGCTAATGGGCGCCAATCTGTACGAGTCACATCTAACAATACCTATGCTGATGGGCTTTTCATC TTTGACATTATCCACACCCCGTACGGATGTGGAACATGGCCAGCCTTGTGGCTGACAGACCCCAGCAACTGGCCC GAGCACGGAGAGATCGATGTAGTGGAAGCTACCAACGCTGGTACTTTTGGAAGCCAATCGACGCTTCACACGTCG AAAGGCTGCACCATGGGCGTTAAACGGAAAGAAAGTGGCACTGTGGATAACGAGAACTGTTACTACGAGGCGAAT GACTATGCGGGCTGCGGCGTGAAAGGCGCTTCGAGTACTTATGGTCCCGAGTTTAACAGCAATGGTGGCGGAGTC TACGCGATGGAGCTCCGTGACGCTGGTATTCGCGTCTGGCAATGGGTCCGCTCTAAGATCCCGTCCGATATCACC TCGGGCAGTCCCGACCCATCCACCTGGGGCAAAGCACTTGCGGACTTCCCCAGCACGGATTGCAACATCGGTTCT CATTTCAAGAACCAGAGTATCATCATCAATATCTCTTTGTGTGGTGACTTGGCGGGCGCGACCAAATACTACACG ACACAAAGTAGTTGCCCTGGCAACTGCACGACATTTGTGCGGGATAATGCGACTAGTTTCGACACTGCGTACTGG GAGTTTGGCGGCTTTAAGGTCTATCAAACCTCGTGA |
| Transcript | >Pro_DTO377G3_2|g8135.t1 ATGCGCGACGATTATACTCAAAACGACCCTGGCGGCTTCCAATCAAGTCATGTGTTGCACAGTAAGACAGCAGTG GGCAGTGCATACCCGCCTGCCTACGGAGAGTGGAGCGGAGAAGCTACAAATACATACTCCAGATGGGACCCCCGG GAATGGTCCTTGAAGAAGAAGATTTTCCTAGCGGCCGGCATCGTGGTGGTAATCGTGGCTGTTGTCGTTGGCTCT GTCCTAGGAGTGCGAGCCAATCGGTACCCCAATTACTCGAAACTGGATTACAGCTTGAAAGACGAATTTTCGGGA TCGACCTTCTTCGACAACTTCGAATATTTTACCGCCACCGACCCAACCAATGGATTTGTCCAGTATATCGACCGA GCTGCATCCGAATGGCTTAATCTAACATACGCCTCGGACACCTCCGCGGTGCTCAAGGTGGACACGACATACAGT GGATCGGAGGCTGCTAATGGGCGCCAATCTGTACGAGTCACATCTAACAATACCTATGCTGATGGGCTTTTCATC TTTGACATTATCCACACCCCGTACGGATGTGGAACATGGCCAGCCTTGTGGCTGACAGACCCCAGCAACTGGCCC GAGCACGGAGAGATCGATGTAGTGGAAGCTACCAACGCTGGTACTTTTGGAAGCCAATCGACGCTTCACACGTCG AAAGGCTGCACCATGGGCGTTAAACGGAAAGAAAGTGGCACTGTGGATAACGAGAACTGTTACTACGAGGCGAAT GACTATGCGGGCTGCGGCGTGAAAGGCGCTTCGAGTACTTATGGTCCCGAGTTTAACAGCAATGGTGGCGGAGTC TACGCGATGGAGCTCCGTGACGCTGGTATTCGCGTCTGGCAATGGGTCCGCTCTAAGATCCCGTCCGATATCACC TCGGGCAGTCCCGACCCATCCACCTGGGGCAAAGCACTTGCGGACTTCCCCAGCACGGATTGCAACATCGGTTCT CATTTCAAGAACCAGAGTATCATCATCAATATCTCTTTGTGTGGTGACTTGGCGGGCGCGACCAAATACTACACG ACACAAAGTAGTTGCCCTGGCAACTGCACGACATTTGTGCGGGATAATGCGACTAGTTTCGACACTGCGTACTGG GAGTTTGGCGGCTTTAAGGTCTATCAAACCTCGTGA |
| Gene | >Pro_DTO377G3_2|g8135.t1 ATGCGCGACGATTATACTCAAAACGACCCTGGCGGCTTCCAATCAAGTCATGTGTTGCACAGTAAGACAGCAGTG GGCAGTGCATACCCGCCTGCCTACGGAGAGTGGAGCGGAGAAGCTACAAATACATACTCCAGATGGGACCCCCGG GAATGGTCCTTGAAGAAGAAGATTTTCCTAGCGGCCGGCATCGTGGTGGTAATCGTGGCTGTTGTCGTTGGCTCT GTCCTAGGAGTGCGAGCCAATCGGTACCCCAATTACTCGAAACTGGATTACAGCTTGAAAGACGAATTTTCGGGA TCGACCTTCTTCGACAACTTCGAATATTTTACCGCCACCGACCCAACCAATGGATTTGTCCAGTATGACCTACAA ACCAAGCCTATGCCAAGCAGATCAACTGACGTGTAATTCAGGTATATCGACCGAGCTGCATCCGAATGGCTTAAT CTAACATACGCCTCGGACACCTCCGCGGTGCTCAAGGTGGACACGACATACAGTGGATCGGAGGCTGCTAATGGG CGCCAATCTGTACGAGTCACATCTAACAATACCTATGCTGATGGGCTTTTCATCTTTGACATTATCCACACCCCG TACGGATGTGGAACATGGCCAGCCTTGTGGCTGACAGACCCCAGCAACTGGCCCGAGCACGGAGAGATCGATGTA GTGGAAGCTACCAACGCTGGTACTTTTGGAAGCCAATCGACGCTTCACACGTCGAAAGGCTGCACCATGGGCGTT AAACGGAAAGAAAGTGGCACTGTGGATAACGAGAACTGTTACTACGAGGCGAATGACTATGCGGGCTGCGGCGTG AAAGGCGCTTCGAGTACTTATGGTCCCGAGTTTAACAGCAATGGTGGCGGAGTAAGTGATGGTGTCCCGGACTGT TCATGCTTCCATCGAAACCAATTTACTAATAACCACCCCTTTCAGGTCTACGCGATGGAGCTCCGTGACGCTGGT ATTCGCGTCTGGCAATGGGTCCGCTCTAAGATCCCGTCCGATATCACCTCGGGCAGTCCCGACCCATCCACCTGG GGCAAAGCACTTGCGGACTTCCCCAGCACGGATTGCAACATCGGTTCTCATTTCAAGAACCAGAGTATCATCATC AATATCTCTTTGTGTGGTGACTTGGCGGGCGCGACCAAATACTACACGACACAAAGTAGTTGCCCTGGCAACTGC ACGACATTTGTGCGGGATAATGCGACTAGTTTCGACACTGCGTACTGGGAGTTTGGCGGCTTTAAGGTCTATCAA ACCTCGTGA |