© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8126.t1 |
| Gene name | |
| Location | scaffold_29:167587..168280 |
| Strand | + |
| Gene length (bp) | 693 |
| Transcript length (bp) | 693 |
| Coding sequence length (bp) | 693 |
| Protein length (aa) | 231 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13532 | 2OG-FeII_Oxy_2 | 2OG-Fe(II) oxygenase superfamily | 2.9E-16 | 19 | 185 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 17.44 | 6.29 | 28.59 |
| 5d_25C | Five days - 25 degrees Celsius | 16.92 | 6.06 | 27.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 18.85 | 7.06 | 30.65 |
| 10d_25C | Ten days - 25 degrees Celsius | 23.78 | 9.62 | 37.94 |
| 7d_15C | Seven days - 15 degrees Celsius | 10.05 | 2.70 | 17.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 19.74 | 7.51 | 31.96 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.958750 | no |
| 3d_25C | 7d_25C | 0.881052 | no |
| 3d_25C | 7d_15C | 0.165913 | no |
| 3d_25C | 7d_30C | 0.795860 | no |
| 3d_25C | 10d_25C | 0.424217 | no |
| 5d_25C | 7d_25C | 0.825077 | no |
| 5d_25C | 7d_15C | 0.196765 | no |
| 5d_25C | 7d_30C | 0.741981 | no |
| 5d_25C | 10d_25C | 0.374232 | no |
| 7d_25C | 7d_15C | 0.099888 | no |
| 7d_25C | 7d_30C | 0.929718 | no |
| 7d_25C | 10d_25C | 0.565966 | no |
| 7d_15C | 7d_30C | 0.080143 | no |
| 7d_15C | 10d_25C | 0.018295 | yes |
| 7d_30C | 10d_25C | 0.660727 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 7125 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8126.t1 MEDRNNFRELPTEPYGIFWQEDFVNAEHEQRLISLFANELEWPDRPGRISLHYGYTFDYKTFGIDPEIPYKEFPE WLKPLIPKTEERPPDQVCLQYYPPGAGIPPHVDAHGPYDQLYALSLGAPAMMIFRRGEERIEVDLTPRSMMQMSG DSRLHWTHGIRKRKNDPLPDGTMRPRGKRWSITYRWLRDGECECGNLELCDTAQRRNGIEKEKRSLKALAEQAAL EEQVV* |
| Coding | >Pro_DTO377G3_2|g8126.t1 ATGGAAGATCGGAATAATTTCCGCGAGTTGCCCACCGAACCCTACGGCATTTTCTGGCAAGAAGACTTTGTCAAT GCCGAGCACGAGCAACGACTCATCTCGTTGTTTGCCAACGAGCTAGAATGGCCCGACCGCCCTGGCCGGATATCA CTCCACTACGGCTACACCTTCGACTATAAAACTTTCGGGATAGACCCGGAGATTCCATACAAGGAATTCCCAGAG TGGCTCAAACCTCTCATCCCAAAAACTGAGGAGCGACCTCCAGACCAGGTCTGTCTGCAGTACTATCCTCCAGGC GCGGGCATCCCGCCCCATGTAGATGCACACGGACCGTATGACCAGCTCTACGCATTATCTCTTGGTGCACCGGCG ATGATGATATTCCGCCGGGGCGAGGAACGCATCGAGGTCGACTTGACCCCGCGGAGCATGATGCAGATGAGCGGC GACTCGAGGCTACATTGGACGCATGGTATTAGGAAGCGAAAAAATGATCCCCTCCCGGATGGGACGATGAGGCCG CGCGGGAAACGGTGGAGTATCACTTATCGGTGGCTCAGGGATGGGGAATGTGAATGTGGGAATCTGGAACTGTGT GACACGGCTCAGCGACGGAATGGGATTGAAAAAGAGAAGAGATCTTTAAAAGCATTGGCGGAGCAGGCTGCGCTC GAGGAACAGGTTGTATAG |
| Transcript | >Pro_DTO377G3_2|g8126.t1 ATGGAAGATCGGAATAATTTCCGCGAGTTGCCCACCGAACCCTACGGCATTTTCTGGCAAGAAGACTTTGTCAAT GCCGAGCACGAGCAACGACTCATCTCGTTGTTTGCCAACGAGCTAGAATGGCCCGACCGCCCTGGCCGGATATCA CTCCACTACGGCTACACCTTCGACTATAAAACTTTCGGGATAGACCCGGAGATTCCATACAAGGAATTCCCAGAG TGGCTCAAACCTCTCATCCCAAAAACTGAGGAGCGACCTCCAGACCAGGTCTGTCTGCAGTACTATCCTCCAGGC GCGGGCATCCCGCCCCATGTAGATGCACACGGACCGTATGACCAGCTCTACGCATTATCTCTTGGTGCACCGGCG ATGATGATATTCCGCCGGGGCGAGGAACGCATCGAGGTCGACTTGACCCCGCGGAGCATGATGCAGATGAGCGGC GACTCGAGGCTACATTGGACGCATGGTATTAGGAAGCGAAAAAATGATCCCCTCCCGGATGGGACGATGAGGCCG CGCGGGAAACGGTGGAGTATCACTTATCGGTGGCTCAGGGATGGGGAATGTGAATGTGGGAATCTGGAACTGTGT GACACGGCTCAGCGACGGAATGGGATTGAAAAAGAGAAGAGATCTTTAAAAGCATTGGCGGAGCAGGCTGCGCTC GAGGAACAGGTTGTATAG |
| Gene | >Pro_DTO377G3_2|g8126.t1 ATGGAAGATCGGAATAATTTCCGCGAGTTGCCCACCGAACCCTACGGCATTTTCTGGCAAGAAGACTTTGTCAAT GCCGAGCACGAGCAACGACTCATCTCGTTGTTTGCCAACGAGCTAGAATGGCCCGACCGCCCTGGCCGGATATCA CTCCACTACGGCTACACCTTCGACTATAAAACTTTCGGGATAGACCCGGAGATTCCATACAAGGAATTCCCAGAG TGGCTCAAACCTCTCATCCCAAAAACTGAGGAGCGACCTCCAGACCAGGTCTGTCTGCAGTACTATCCTCCAGGC GCGGGCATCCCGCCCCATGTAGATGCACACGGACCGTATGACCAGCTCTACGCATTATCTCTTGGTGCACCGGCG ATGATGATATTCCGCCGGGGCGAGGAACGCATCGAGGTCGACTTGACCCCGCGGAGCATGATGCAGATGAGCGGC GACTCGAGGCTACATTGGACGCATGGTATTAGGAAGCGAAAAAATGATCCCCTCCCGGATGGGACGATGAGGCCG CGCGGGAAACGGTGGAGTATCACTTATCGGTGGCTCAGGGATGGGGAATGTGAATGTGGGAATCTGGAACTGTGT GACACGGCTCAGCGACGGAATGGGATTGAAAAAGAGAAGAGATCTTTAAAAGCATTGGCGGAGCAGGCTGCGCTC GAGGAACAGGTTGTATAG |