Protein ID | Pro_DTO377G3_2|g8110.t1 |
Gene name | |
Location | scaffold_29:118044..121178 |
Strand | + |
Gene length (bp) | 3134 |
Transcript length (bp) | 3030 |
Coding sequence length (bp) | 3030 |
Protein length (aa) | 1010 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03097 | BRO1 | BRO1-like domain | 1.1E-127 | 6 | 393 |
PF13949 | ALIX_LYPXL_bnd | ALIX V-shaped domain binding to HIV | 4.2E-74 | 433 | 754 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 33 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g8110.t1 MAQSPMLSCPLKQTNEIDWIQPLKDYIRQSNGEDPERYNQECATLNRLRQDMRGVGKDSAIGRDLLYRYYSQLEL LDLRFPIDDNHIKISFTWYDAFTHASTSQFSLAFEKASIIFNISAILCCHAANQSRADDTGLKTAYHSFQASAGM FTYINKNFLHPPSTDLKEDTIKTLINVTLAQAQEVFFEKQVADQRKPGLLAKLAGQAAYLYSQAAEIMQNFVEKN VFDKVWTVVVQTKAAHMGSVASYYQAVADSESGSYGIAIARLQMADKQSATALSWAKTFPSSPPATSSLTAEAGP NLVDLVKHNQTNVQALLATMVKDNDFIYHQPVPNEAGLSPVARVAAAKAIPVSELYQGQDITEITGPDIFKKLVP EKVTQIASIYSEEKDKLLRAETEKAETARSELAASLLSLDLPGSLDVLKGGMNQDMSVDSEFRRWCSELAGHSPF RRAFDELQERKLEVLSQLDECSKQLDLEESVCEKMRSKYGADWGQQPSSRLNTTLRGDVRSYRDTINEASASDSQ LSSTFRQYDSDFDEMRSAGETDEADVLFQRALIKVRSKHSKGKDGATSPAEGTLLDDVYDEGRASVAEQIAKVEV ILKKLNLVDRERSQLLTDLKAAIHADDITEFLILNLKSIVGQETECFKKQLPKFLPYQNILVQANHKQSSLIKEL NKLYDDLRRDKRVQSEKLKWESITRQRNSVLARYKKVYEAFHGLSSGIKQARTFYKEMCENVDSLRKNVETFINN RRSEGAQLLSQIEREKGVGNSADGLRRNPDSFNNRDQSSGVSEQEDREREKLRQLMERLSTEPPSAGSTKPPSKV KSPPPAVQTPAYGTTGPSPKPSPRYPPTLPGVSHSPAPYGQYMGGGPGAYPAQHFQQGAAAPLSDGYNPMAYPYQ TPVSPPPNRQFFSQTPVPYGSYSNSGTPAPGAGPQPSHYMAAQGYIPPPPPPRPQQTTYPPTAGPTYASGPGGYA QSRPYGHHKTPSQSQPQSQPGSSADPWAGLNAWK* |
Coding | >Pro_DTO377G3_2|g8110.t1 ATGGCTCAGTCGCCGATGCTATCATGTCCGTTGAAGCAGACCAACGAGATTGATTGGATCCAGCCCCTCAAGGAT TACATTCGACAGAGCAATGGCGAGGATCCCGAGCGATACAACCAAGAATGCGCGACTCTCAACCGACTTCGCCAG GACATGAGGGGCGTAGGGAAAGACAGCGCTATCGGTCGTGATCTGTTGTATCGATACTACAGTCAGTTAGAGCTG CTGGACCTCAGATTCCCCATCGATGACAACCACATCAAGATCTCTTTCACATGGTACGATGCTTTCACTCATGCG TCTACTTCTCAATTCTCCCTAGCCTTCGAAAAGGCATCCATTATCTTTAACATCTCCGCCATCCTGTGTTGCCAT GCTGCCAACCAGAGCCGGGCCGACGATACCGGTCTCAAGACCGCCTATCACTCTTTCCAGGCATCCGCCGGAATG TTTACATATATTAATAAGAACTTCTTACATCCGCCATCAACCGACCTGAAAGAGGACACCATCAAGACACTGATA AATGTCACACTAGCTCAAGCCCAAGAGGTGTTTTTTGAGAAACAAGTGGCAGACCAGAGGAAGCCTGGGCTTTTG GCCAAGCTGGCTGGACAGGCAGCGTACCTCTACTCGCAGGCTGCGGAGATAATGCAAAATTTCGTGGAAAAGAAT GTGTTTGACAAGGTCTGGACGGTTGTTGTGCAGACCAAAGCAGCACATATGGGATCAGTAGCATCATATTATCAG GCGGTTGCGGACAGTGAGAGCGGATCTTATGGAATTGCTATTGCTCGTTTACAGATGGCCGATAAGCAGTCCGCC ACTGCTCTAAGCTGGGCAAAGACATTCCCCTCGTCGCCTCCAGCGACCTCCAGTCTGACGGCAGAGGCGGGTCCG AACCTCGTGGACCTCGTCAAGCATAATCAAACAAATGTGCAAGCTTTACTTGCCACTATGGTCAAAGACAATGAT TTCATCTATCACCAACCGGTCCCTAATGAGGCTGGTCTTTCACCAGTTGCAAGGGTTGCAGCTGCCAAGGCGATA CCGGTTAGCGAATTATACCAAGGACAAGATATTACGGAAATCACTGGGCCAGACATCTTCAAAAAACTAGTGCCT GAGAAGGTAACTCAGATCGCCAGTATTTACTCCGAAGAAAAGGACAAGTTGCTTCGAGCTGAGACTGAAAAGGCC GAGACTGCCAGGAGTGAGCTGGCCGCTAGCTTGCTCTCCCTCGACCTGCCAGGCTCTCTCGATGTCTTGAAGGGT GGCATGAACCAGGACATGTCAGTGGACAGTGAGTTCCGTCGCTGGTGTTCAGAACTTGCTGGTCACAGTCCCTTC CGCAGGGCATTCGACGAGTTGCAGGAGCGCAAGCTAGAAGTGCTATCGCAATTAGATGAGTGCTCAAAGCAGCTA GATCTAGAAGAGAGCGTGTGTGAGAAGATGCGATCAAAGTATGGAGCAGATTGGGGCCAGCAACCCAGCTCTCGA CTCAATACCACGCTTCGAGGGGATGTCCGATCTTATCGAGATACTATCAACGAGGCCAGCGCAAGTGATTCTCAG TTGTCTTCCACATTTCGGCAGTATGACAGCGATTTTGATGAGATGCGGTCTGCTGGCGAAACGGATGAGGCCGAT GTCCTCTTCCAGCGAGCATTGATCAAAGTCCGTTCGAAGCATAGCAAGGGCAAGGACGGTGCCACTAGTCCGGCG GAAGGTACTCTGCTAGATGATGTGTATGATGAGGGTCGTGCCTCTGTTGCAGAGCAGATTGCTAAAGTGGAGGTG ATTCTAAAGAAACTCAATCTCGTGGACCGAGAGAGGTCTCAACTGCTCACAGATCTCAAAGCGGCGATCCACGCA GATGACATCACGGAATTCTTGATTCTAAACCTGAAGTCGATTGTCGGCCAAGAAACCGAATGCTTCAAAAAACAA TTGCCAAAGTTCCTGCCATATCAGAACATACTTGTACAGGCGAATCACAAACAATCATCTTTGATAAAAGAACTC AACAAGCTATACGATGACCTTCGTCGAGATAAAAGAGTTCAATCCGAGAAGTTGAAGTGGGAGTCTATAACAAGA CAGCGCAATTCCGTGCTAGCTCGATACAAGAAGGTCTACGAAGCCTTCCATGGGCTCTCGTCGGGTATCAAGCAA GCACGGACTTTTTACAAGGAAATGTGTGAAAATGTCGACAGTCTCCGCAAGAATGTCGAAACTTTCATCAACAAC CGCCGGTCAGAAGGTGCGCAGCTTCTCAGTCAGATTGAGCGCGAAAAGGGTGTGGGCAACAGTGCAGACGGTCTC CGCAGGAATCCCGACTCGTTCAACAACCGCGATCAGTCCAGCGGTGTCTCAGAGCAAGAAGACCGCGAGCGAGAG AAGCTCCGCCAGCTGATGGAGCGCCTATCAACGGAACCTCCCTCCGCGGGATCAACAAAACCGCCCTCAAAAGTC AAGTCACCACCCCCGGCGGTTCAAACACCGGCGTATGGAACCACCGGTCCATCCCCAAAGCCGTCACCTCGCTAC CCTCCGACCTTGCCAGGCGTGTCCCACTCTCCAGCGCCCTACGGGCAGTACATGGGAGGTGGTCCAGGAGCTTAC CCGGCCCAGCATTTCCAGCAAGGTGCCGCAGCTCCCCTATCCGATGGCTACAACCCCATGGCATATCCTTACCAG ACCCCCGTGTCCCCACCCCCGAATCGGCAATTTTTCTCTCAAACCCCGGTCCCGTACGGCAGCTACTCAAACTCC GGCACGCCGGCTCCTGGCGCTGGCCCTCAGCCCTCGCACTATATGGCTGCCCAGGGCTATATCCCGCCTCCGCCT CCTCCGCGTCCCCAGCAGACAACCTATCCTCCTACAGCAGGTCCTACATACGCCTCTGGTCCTGGTGGCTATGCG CAGAGCAGACCGTACGGGCACCACAAGACCCCTTCGCAGTCGCAGCCACAGTCGCAGCCCGGCTCCTCCGCCGAT CCGTGGGCTGGTCTCAACGCCTGGAAATAA |
Transcript | >Pro_DTO377G3_2|g8110.t1 ATGGCTCAGTCGCCGATGCTATCATGTCCGTTGAAGCAGACCAACGAGATTGATTGGATCCAGCCCCTCAAGGAT TACATTCGACAGAGCAATGGCGAGGATCCCGAGCGATACAACCAAGAATGCGCGACTCTCAACCGACTTCGCCAG GACATGAGGGGCGTAGGGAAAGACAGCGCTATCGGTCGTGATCTGTTGTATCGATACTACAGTCAGTTAGAGCTG CTGGACCTCAGATTCCCCATCGATGACAACCACATCAAGATCTCTTTCACATGGTACGATGCTTTCACTCATGCG TCTACTTCTCAATTCTCCCTAGCCTTCGAAAAGGCATCCATTATCTTTAACATCTCCGCCATCCTGTGTTGCCAT GCTGCCAACCAGAGCCGGGCCGACGATACCGGTCTCAAGACCGCCTATCACTCTTTCCAGGCATCCGCCGGAATG TTTACATATATTAATAAGAACTTCTTACATCCGCCATCAACCGACCTGAAAGAGGACACCATCAAGACACTGATA AATGTCACACTAGCTCAAGCCCAAGAGGTGTTTTTTGAGAAACAAGTGGCAGACCAGAGGAAGCCTGGGCTTTTG GCCAAGCTGGCTGGACAGGCAGCGTACCTCTACTCGCAGGCTGCGGAGATAATGCAAAATTTCGTGGAAAAGAAT GTGTTTGACAAGGTCTGGACGGTTGTTGTGCAGACCAAAGCAGCACATATGGGATCAGTAGCATCATATTATCAG GCGGTTGCGGACAGTGAGAGCGGATCTTATGGAATTGCTATTGCTCGTTTACAGATGGCCGATAAGCAGTCCGCC ACTGCTCTAAGCTGGGCAAAGACATTCCCCTCGTCGCCTCCAGCGACCTCCAGTCTGACGGCAGAGGCGGGTCCG AACCTCGTGGACCTCGTCAAGCATAATCAAACAAATGTGCAAGCTTTACTTGCCACTATGGTCAAAGACAATGAT TTCATCTATCACCAACCGGTCCCTAATGAGGCTGGTCTTTCACCAGTTGCAAGGGTTGCAGCTGCCAAGGCGATA CCGGTTAGCGAATTATACCAAGGACAAGATATTACGGAAATCACTGGGCCAGACATCTTCAAAAAACTAGTGCCT GAGAAGGTAACTCAGATCGCCAGTATTTACTCCGAAGAAAAGGACAAGTTGCTTCGAGCTGAGACTGAAAAGGCC GAGACTGCCAGGAGTGAGCTGGCCGCTAGCTTGCTCTCCCTCGACCTGCCAGGCTCTCTCGATGTCTTGAAGGGT GGCATGAACCAGGACATGTCAGTGGACAGTGAGTTCCGTCGCTGGTGTTCAGAACTTGCTGGTCACAGTCCCTTC CGCAGGGCATTCGACGAGTTGCAGGAGCGCAAGCTAGAAGTGCTATCGCAATTAGATGAGTGCTCAAAGCAGCTA GATCTAGAAGAGAGCGTGTGTGAGAAGATGCGATCAAAGTATGGAGCAGATTGGGGCCAGCAACCCAGCTCTCGA CTCAATACCACGCTTCGAGGGGATGTCCGATCTTATCGAGATACTATCAACGAGGCCAGCGCAAGTGATTCTCAG TTGTCTTCCACATTTCGGCAGTATGACAGCGATTTTGATGAGATGCGGTCTGCTGGCGAAACGGATGAGGCCGAT GTCCTCTTCCAGCGAGCATTGATCAAAGTCCGTTCGAAGCATAGCAAGGGCAAGGACGGTGCCACTAGTCCGGCG GAAGGTACTCTGCTAGATGATGTGTATGATGAGGGTCGTGCCTCTGTTGCAGAGCAGATTGCTAAAGTGGAGGTG ATTCTAAAGAAACTCAATCTCGTGGACCGAGAGAGGTCTCAACTGCTCACAGATCTCAAAGCGGCGATCCACGCA GATGACATCACGGAATTCTTGATTCTAAACCTGAAGTCGATTGTCGGCCAAGAAACCGAATGCTTCAAAAAACAA TTGCCAAAGTTCCTGCCATATCAGAACATACTTGTACAGGCGAATCACAAACAATCATCTTTGATAAAAGAACTC AACAAGCTATACGATGACCTTCGTCGAGATAAAAGAGTTCAATCCGAGAAGTTGAAGTGGGAGTCTATAACAAGA CAGCGCAATTCCGTGCTAGCTCGATACAAGAAGGTCTACGAAGCCTTCCATGGGCTCTCGTCGGGTATCAAGCAA GCACGGACTTTTTACAAGGAAATGTGTGAAAATGTCGACAGTCTCCGCAAGAATGTCGAAACTTTCATCAACAAC CGCCGGTCAGAAGGTGCGCAGCTTCTCAGTCAGATTGAGCGCGAAAAGGGTGTGGGCAACAGTGCAGACGGTCTC CGCAGGAATCCCGACTCGTTCAACAACCGCGATCAGTCCAGCGGTGTCTCAGAGCAAGAAGACCGCGAGCGAGAG AAGCTCCGCCAGCTGATGGAGCGCCTATCAACGGAACCTCCCTCCGCGGGATCAACAAAACCGCCCTCAAAAGTC AAGTCACCACCCCCGGCGGTTCAAACACCGGCGTATGGAACCACCGGTCCATCCCCAAAGCCGTCACCTCGCTAC CCTCCGACCTTGCCAGGCGTGTCCCACTCTCCAGCGCCCTACGGGCAGTACATGGGAGGTGGTCCAGGAGCTTAC CCGGCCCAGCATTTCCAGCAAGGTGCCGCAGCTCCCCTATCCGATGGCTACAACCCCATGGCATATCCTTACCAG ACCCCCGTGTCCCCACCCCCGAATCGGCAATTTTTCTCTCAAACCCCGGTCCCGTACGGCAGCTACTCAAACTCC GGCACGCCGGCTCCTGGCGCTGGCCCTCAGCCCTCGCACTATATGGCTGCCCAGGGCTATATCCCGCCTCCGCCT CCTCCGCGTCCCCAGCAGACAACCTATCCTCCTACAGCAGGTCCTACATACGCCTCTGGTCCTGGTGGCTATGCG CAGAGCAGACCGTACGGGCACCACAAGACCCCTTCGCAGTCGCAGCCACAGTCGCAGCCCGGCTCCTCCGCCGAT CCGTGGGCTGGTCTCAACGCCTGGAAATAA |
Gene | >Pro_DTO377G3_2|g8110.t1 ATGGCTCAGTCGCCGATGCTATCATGTCCGTTGAAGCAGACCAACGAGATTGATTGGATCCAGCCCCTCAAGGAT TACATTCGACAGAGCAATGGCGAGGATCCCGAGCGATACAACCAAGAATGCGCGACTCTCAACCGACTTCGCCAG GACATGAGGGGCGTAGGGAAAGACAGCGCTATCGGTCGTGATCTGTTGTATCGATACTACAGTCAGTTAGAGCTG CTGGACCTCAGATTCCCCATCGATGACAACCACATCAAGATCTCTTTCACATGGTAGGGGTATTTTTCCGGTGTA TATTCCGCTTTTGCTTACTATTTTTCTATAGGTACGATGCTTTCACTCATGCGTCTACTTCTCAATTCTCCCTAG CCTTCGAAAAGGCATCCATTATCTTTAACATCTCCGCCATCCTGTGTTGCCATGCTGCCAACCAGAGCCGGGCCG ACGATACCGGTCTCAAGACCGCCTATCACTCTTTCCAGGCATCCGCCGGAATGTTTACATATATTAATAAGAACT TCTTACATCCGCCATCAACCGACCTGAAAGAGGACACCATCAAGACACTGATAAATGTCACACTAGCTCAAGCCC AAGAGGTGTTTTTTGAGAAACAAGTGGCAGACCAGAGGAAGCCTGGGCTTTTGGCCAAGCTGGCTGGACAGGCAG CGTACCTCTACTCGCAGGCTGCGGAGATAATGCAAAATTTCGTGGAAAAGAATGTGTTTGACAAGGTCTGGACGG TTGTTGTGCAGACCAAAGCAGCACATATGGGATCAGTAGCATCATATTATCAGGCGGTTGCGGACAGTGAGAGCG GATCTTATGGAATTGCTATTGCTCGTTTACAGATGGCCGATAAGCAGTCCGCCACTGCTCTAAGCTGGGCAAAGA CATTCCCCTCGTCGCCTCCAGCGACCTCCAGTCTGACGGCAGAGGCGGGTCCGAACCTCGTGGACCTCGTCAAGC ATAATCAAACAAATGTGCAAGCTTTACTTGCCACTATGGTCAAAGACAATGATTTCATCTATCACCAACCGGTCC CTAATGAGGCTGGTCTTTCACCAGTTGCAAGGGTTGCAGCTGCCAAGGCGATACCGGTTAGCGAATTATACCAAG GACAAGATATTACGGAAATCACTGGGCCAGACATCTTCAAAAAACTAGTGCCTGAGAAGGTAACTCAGATCGCCA GTATTTACTCCGAAGAAAAGGACAAGTTGCTTCGAGCTGAGACTGAAAAGGCCGAGACTGCCAGGAGTGAGCTGG CCGCTAGCTTGCTCTCCCTCGACCTGCCAGGCTCTCTCGATGTCTTGAAGGGTGGCATGAACCAGGACATGTCAG TGGACAGTGAGTTCCGTCGCTGGTGTTCAGAACTTGCTGGTCACAGTCCCTTCCGCAGGGCATTCGACGAGTTGC AGGAGCGCAAGCTAGAAGTGCTATCGCAATTAGATGAGTGCTCAAAGCAGCTAGATCTAGAAGAGAGCGTGTGTG AGAAGATGCGATCAAAGTATGGAGCAGATTGGGGCCAGCAACCCAGCTCTCGACTCAATACCACGCTTCGAGGGG ATGTCCGATCTTATCGAGATACTATCAACGAGGCCAGCGCAAGTGATTCTCAGTTGTCTTCCACATTTCGGCAGT ATGACAGCGATTTTGATGAGATGCGGTCTGCTGGCGAAACGGATGAGGCCGATGTCCTCTTCCAGCGAGCATTGA TCAAAGTCCGTTCGAAGCATAGCAAGGGCAAGGACGGTGCCACTAGTCCGGCGGAAGGTACTCTGCTAGATGATG TGTATGATGAGGGTCGTGCCTCTGTTGCAGAGCAGATTGCTAAAGTGGAGGTGATTCTAAAGAAACTCAATCTCG TGGACCGAGAGAGGTCTCAACTGCTCACAGATCTCAAAGCGGCGGTAAGCATCCTAGCGTGTCTGTTCACGAAAA ATCTCTAACTCTGTCTTTAGATCCACGCAGATGACATCACGGAATTCTTGATTCTAAACCTGAAGTCGATTGTCG GCCAAGAAACCGAATGCTTCAAAAAACAATTGCCAAAGTTCCTGCCATATCAGAACATACTTGTACAGGCGAATC ACAAACAATCATCTTTGATAAAAGAACTCAACAAGCTATACGATGACCTTCGTCGAGATAAAAGAGTTCAATCCG AGAAGTTGAAGTGGGAGTCTATAACAAGACAGCGCAATTCCGTGCTAGCTCGATACAAGAAGGTCTACGAAGCCT TCCATGGGCTCTCGTCGGGTATCAAGCAAGCACGGACTTTTTACAAGGAAATGTGTGAAAATGTCGACAGTCTCC GCAAGAATGTCGAAACTTTCATCAACAACCGCCGGTCAGAAGGTGCGCAGCTTCTCAGTCAGATTGAGCGCGAAA AGGGTGTGGGCAACAGTGCAGACGGTCTCCGCAGGAATCCCGACTCGTTCAACAACCGCGATCAGTCCAGCGGTG TCTCAGAGCAAGAAGACCGCGAGCGAGAGAAGCTCCGCCAGCTGATGGAGCGCCTATCAACGGAACCTCCCTCCG CGGGATCAACAAAACCGCCCTCAAAAGTCAAGTCACCACCCCCGGCGGTTCAAACACCGGCGTATGGAACCACCG GTCCATCCCCAAAGCCGTCACCTCGCTACCCTCCGACCTTGCCAGGCGTGTCCCACTCTCCAGCGCCCTACGGGC AGTACATGGGAGGTGGTCCAGGAGCTTACCCGGCCCAGCATTTCCAGCAAGGTGCCGCAGCTCCCCTATCCGATG GCTACAACCCCATGGCATATCCTTACCAGACCCCCGTGTCCCCACCCCCGAATCGGCAATTTTTCTCTCAAACCC CGGTCCCGTACGGCAGCTACTCAAACTCCGGCACGCCGGCTCCTGGCGCTGGCCCTCAGCCCTCGCACTATATGG CTGCCCAGGGCTATATCCCGCCTCCGCCTCCTCCGCGTCCCCAGCAGACAACCTATCCTCCTACAGCAGGTCCTA CATACGCCTCTGGTCCTGGTGGCTATGCGCAGAGCAGACCGTACGGGCACCACAAGACCCCTTCGCAGTCGCAGC CACAGTCGCAGCCCGGCTCCTCCGCCGATCCGTGGGCTGGTCTCAACGCCTGGAAATAA |