© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8104.t1 |
| Gene name | |
| Location | scaffold_29:101871..102579 |
| Strand | - |
| Gene length (bp) | 708 |
| Transcript length (bp) | 579 |
| Coding sequence length (bp) | 579 |
| Protein length (aa) | 193 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01230 | HIT | HIT domain | 6.3E-25 | 21 | 111 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 61.90 | 30.63 | 93.17 |
| 5d_25C | Five days - 25 degrees Celsius | 54.25 | 25.91 | 82.59 |
| 7d_25C | Seven days - 25 degrees Celsius | 41.27 | 18.22 | 64.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 36.78 | 15.73 | 57.84 |
| 7d_15C | Seven days - 15 degrees Celsius | 52.52 | 24.79 | 80.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 46.53 | 21.25 | 71.80 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.721684 | no |
| 3d_25C | 7d_25C | 0.185175 | no |
| 3d_25C | 7d_15C | 0.645325 | no |
| 3d_25C | 7d_30C | 0.378709 | no |
| 3d_25C | 10d_25C | 0.074740 | no |
| 5d_25C | 7d_25C | 0.418549 | no |
| 5d_25C | 7d_15C | 0.943310 | no |
| 5d_25C | 7d_30C | 0.682957 | no |
| 5d_25C | 10d_25C | 0.219229 | no |
| 7d_25C | 7d_15C | 0.486522 | no |
| 7d_25C | 7d_30C | 0.769831 | no |
| 7d_25C | 10d_25C | 0.786945 | no |
| 7d_15C | 7d_30C | 0.755471 | no |
| 7d_15C | 10d_25C | 0.264459 | no |
| 7d_30C | 10d_25C | 0.511488 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8104.t1 MPALKATTAPIYFGSFIVTPQVFYTTSLTFALVNLKPILPGHVLVSPRRVVPRVTDLTPDETSDLFLTVRRVGRM VERVYGATSLNIAIQDGADAGQSVPHVHAHIIPRKSADLDHAGGMDAIYDLLDGQEGDLGNAFKNAAPTEEGDQS ANSGRRSRLPVVDNESRKPRSEDEMKAEADILAREMENEPLD* |
| Coding | >Pro_DTO377G3_2|g8104.t1 ATGCCAGCTCTCAAAGCTACCACAGCGCCAATCTACTTTGGCTCCTTCATTGTCACACCACAGGTCTTCTACACA ACGTCCCTAACCTTCGCCCTGGTAAACCTGAAACCAATCCTCCCAGGCCACGTCCTAGTCTCACCACGCCGCGTC GTCCCCCGCGTCACAGATCTCACCCCAGACGAAACAAGCGACCTCTTCCTAACAGTCCGACGCGTGGGTCGGATG GTCGAGCGCGTATACGGTGCCACAAGCTTGAACATCGCCATTCAGGACGGCGCAGACGCCGGCCAGAGCGTGCCG CATGTCCATGCGCATATAATCCCGCGCAAGTCGGCGGATTTAGATCATGCCGGTGGCATGGATGCGATTTATGAC TTGCTAGATGGGCAGGAGGGGGATTTGGGGAACGCGTTTAAGAATGCTGCTCCTACGGAAGAGGGTGACCAGTCT GCGAATTCGGGGAGGAGATCTAGGCTCCCGGTTGTGGATAATGAGTCGCGCAAGCCTCGCAGTGAAGATGAAATG AAGGCTGAGGCTGATATTTTGGCGAGGGAAATGGAGAATGAGCCTCTTGATTAA |
| Transcript | >Pro_DTO377G3_2|g8104.t1 ATGCCAGCTCTCAAAGCTACCACAGCGCCAATCTACTTTGGCTCCTTCATTGTCACACCACAGGTCTTCTACACA ACGTCCCTAACCTTCGCCCTGGTAAACCTGAAACCAATCCTCCCAGGCCACGTCCTAGTCTCACCACGCCGCGTC GTCCCCCGCGTCACAGATCTCACCCCAGACGAAACAAGCGACCTCTTCCTAACAGTCCGACGCGTGGGTCGGATG GTCGAGCGCGTATACGGTGCCACAAGCTTGAACATCGCCATTCAGGACGGCGCAGACGCCGGCCAGAGCGTGCCG CATGTCCATGCGCATATAATCCCGCGCAAGTCGGCGGATTTAGATCATGCCGGTGGCATGGATGCGATTTATGAC TTGCTAGATGGGCAGGAGGGGGATTTGGGGAACGCGTTTAAGAATGCTGCTCCTACGGAAGAGGGTGACCAGTCT GCGAATTCGGGGAGGAGATCTAGGCTCCCGGTTGTGGATAATGAGTCGCGCAAGCCTCGCAGTGAAGATGAAATG AAGGCTGAGGCTGATATTTTGGCGAGGGAAATGGAGAATGAGCCTCTTGATTAA |
| Gene | >Pro_DTO377G3_2|g8104.t1 ATGCCAGCTCTCAAAGCTACCACAGCGCCAATCTACTTTGGCTCCTTCATTGTCACACCACAGGTAAATTGCTCA TGATCCACTCAACCCCCAGTCTTCTCAACCAACACCAACCACGTTATATCACAGAACTAGCCATAGACACAAGTA CAACCATAACCATGAACACAACTAACGCCAACACACCAACAGGTCTTCTACACAACGTCCCTAACCTTCGCCCTG GTAAACCTGAAACCAATCCTCCCAGGCCACGTCCTAGTCTCACCACGCCGCGTCGTCCCCCGCGTCACAGATCTC ACCCCAGACGAAACAAGCGACCTCTTCCTAACAGTCCGACGCGTGGGTCGGATGGTCGAGCGCGTATACGGTGCC ACAAGCTTGAACATCGCCATTCAGGACGGCGCAGACGCCGGCCAGAGCGTGCCGCATGTCCATGCGCATATAATC CCGCGCAAGTCGGCGGATTTAGATCATGCCGGTGGCATGGATGCGATTTATGACTTGCTAGATGGGCAGGAGGGG GATTTGGGGAACGCGTTTAAGAATGCTGCTCCTACGGAAGAGGGTGACCAGTCTGCGAATTCGGGGAGGAGATCT AGGCTCCCGGTTGTGGATAATGAGTCGCGCAAGCCTCGCAGTGAAGATGAAATGAAGGCTGAGGCTGATATTTTG GCGAGGGAAATGGAGAATGAGCCTCTTGATTAA |