© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8091.t1 |
| Gene name | |
| Location | scaffold_29:65688..67617 |
| Strand | + |
| Gene length (bp) | 1929 |
| Transcript length (bp) | 1929 |
| Coding sequence length (bp) | 1929 |
| Protein length (aa) | 643 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13434 | Lys_Orn_oxgnase | L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase | 9.8E-05 | 137 | 288 |
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 2.3E-06 | 81 | 299 |
| PF00743 | FMO-like | Flavin-binding monooxygenase-like | 2.0E-06 | 153 | 304 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004499 | N,N-dimethylaniline monooxygenase activity | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 82 | 104 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.78 | 0.74 | 4.83 |
| 5d_25C | Five days - 25 degrees Celsius | 2.03 | 0.42 | 3.63 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.96 | 0.42 | 3.51 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.09 | 0.07 | 2.11 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.35 | 0.40 | 4.30 |
| 7d_30C | Seven days - 30 degrees Celsius | 4.65 | 1.58 | 7.73 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.544036 | no |
| 3d_25C | 7d_25C | 0.492574 | no |
| 3d_25C | 7d_15C | 0.780860 | no |
| 3d_25C | 7d_30C | 0.215991 | no |
| 3d_25C | 10d_25C | 0.058988 | no |
| 5d_25C | 7d_25C | 0.966089 | no |
| 5d_25C | 7d_15C | 0.820431 | no |
| 5d_25C | 7d_30C | 0.044585 | yes |
| 5d_25C | 10d_25C | 0.249321 | no |
| 7d_25C | 7d_15C | 0.772457 | no |
| 7d_25C | 7d_30C | 0.030863 | yes |
| 7d_25C | 10d_25C | 0.275712 | no |
| 7d_15C | 7d_30C | 0.114502 | no |
| 7d_15C | 10d_25C | 0.146785 | no |
| 7d_30C | 10d_25C | 0.006371 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8091.t1 MSEKSVVGLAPPVPDQPTTNIASIAETSDDLQNIQDQYDAERKKRLRPDGPTQYVDLTDDPAYLNEFIVVNTDML QQRQTRVLIVGAGFGGLLFAVRLLQSGFLRASEILFVDAAGGFGGTWWWNKYPGLVCDVESYTYMPLLEETKYMP PHKYVSGSELRRHAKRIASQWKLSQRALFQTEVDNLVWNERDSQWTVNIKPRGQRSTAIQSDFVILATGLLSSPK IPKLDGLETFEGKVFHTSRWDYDYTGGSPDSPMMDGLRDKTVGFVGTGASAVQVIPHLAGWAKKLIVFQRTPSSV DSRYNHLTDRTWWAKLIKGGPGWQRKRMENFNAFCSNESPLPDVDLVDDGWTKMQSLGVLIGSPSGLDPDYLTRM HQLDLQRQEAIRHRVETTVADPATASALKPWYPGWCKRPCFSDNFLPAFNRPDVSLVDTNGKGIRTVTEKGILVE GQEYDLDTIIFGTGYSLGGSADRGAMTVTGRDNQILPEKWQKGMTSLHGVMTNGFPNLFFPGPYQAGASANQVYV LDQLAVHVAYIISEAGKLISERNPDVTVPGLTIEPDCRSEEEWTSKVLMRARALRGVMDCTPGYFNREGLQFDDG EALRAAQFSIWGEGIKSYVKEIEDWRQTGGLAGLDIQARHGA* |
| Coding | >Pro_DTO377G3_2|g8091.t1 ATGTCCGAGAAATCTGTGGTTGGCCTAGCGCCTCCTGTTCCTGATCAACCTACCACCAACATAGCCAGTATAGCT GAGACAAGCGACGATCTGCAGAATATACAAGACCAGTATGATGCAGAACGTAAGAAACGCCTACGCCCTGACGGA CCAACCCAATATGTTGACTTGACCGATGACCCCGCCTACTTGAACGAATTCATCGTCGTCAACACCGATATGCTC CAGCAGAGGCAAACCCGAGTCCTCATCGTCGGTGCTGGGTTCGGAGGTCTGCTATTCGCAGTGCGACTGCTCCAA TCTGGATTCCTCCGTGCGAGTGAAATCCTCTTCGTGGATGCAGCAGGTGGCTTTGGAGGAACGTGGTGGTGGAAC AAATACCCCGGCTTGGTCTGCGATGTCGAGAGCTACACTTACATGCCCTTGCTAGAGGAAACGAAGTACATGCCG CCGCATAAGTATGTCAGCGGGTCGGAATTGAGGCGACACGCGAAGCGCATTGCCAGTCAATGGAAGCTCAGCCAG CGGGCTTTGTTCCAGACCGAGGTCGATAACTTGGTTTGGAATGAGCGGGATTCTCAATGGACTGTCAATATTAAA CCTCGTGGCCAGCGATCCACTGCGATACAGTCTGATTTTGTTATCTTGGCTACTGGGTTGCTGAGTTCACCGAAG ATACCGAAATTGGACGGGCTTGAGACGTTCGAGGGGAAGGTTTTCCACACCTCGCGCTGGGACTATGATTACACC GGCGGAAGTCCAGACAGCCCGATGATGGATGGACTACGAGACAAGACAGTTGGATTTGTCGGAACGGGCGCATCT GCCGTCCAGGTGATCCCACACCTTGCCGGGTGGGCAAAGAAATTGATTGTCTTTCAGCGCACACCGTCTTCTGTG GATTCGCGTTACAATCACCTCACCGATCGCACCTGGTGGGCGAAACTGATCAAAGGAGGCCCCGGTTGGCAACGA AAGCGCATGGAGAATTTCAATGCCTTCTGCTCGAACGAGAGTCCCCTCCCAGATGTTGACCTTGTCGATGATGGT TGGACCAAGATGCAGTCCCTCGGTGTACTGATCGGCAGTCCCTCCGGTCTTGACCCGGACTACCTAACGCGGATG CATCAATTGGACTTGCAACGCCAAGAGGCGATCCGCCATCGCGTGGAAACCACTGTGGCCGATCCCGCTACTGCT AGTGCTTTGAAGCCGTGGTATCCTGGATGGTGCAAGCGGCCATGCTTCAGCGACAACTTTCTCCCGGCATTCAAC CGGCCCGACGTTTCCCTGGTGGACACGAACGGAAAAGGGATCCGGACTGTGACAGAGAAAGGCATCTTGGTAGAG GGCCAAGAGTATGACCTGGACACCATCATTTTCGGAACCGGCTACAGTCTTGGGGGTAGTGCCGATCGCGGGGCT ATGACCGTCACCGGACGTGACAACCAGATCCTGCCGGAAAAATGGCAGAAGGGCATGACTTCACTCCATGGAGTA ATGACCAATGGGTTTCCCAATCTGTTCTTCCCAGGTCCGTATCAAGCAGGAGCATCAGCGAACCAGGTCTATGTT CTCGATCAGCTTGCCGTTCATGTCGCCTACATCATTTCGGAAGCCGGCAAGTTGATCTCGGAGCGAAACCCAGAT GTCACCGTGCCCGGGCTTACTATTGAGCCGGACTGTCGCTCCGAAGAGGAATGGACTTCGAAGGTTTTGATGAGA GCCCGAGCGCTCAGAGGTGTGATGGATTGCACTCCGGGGTACTTCAATCGGGAGGGACTCCAATTTGACGACGGT GAAGCCTTGCGGGCGGCGCAGTTCAGTATCTGGGGAGAGGGGATTAAGAGTTATGTGAAGGAGATTGAAGATTGG CGGCAGACGGGCGGGTTGGCCGGGCTTGATATTCAGGCCCGACATGGCGCGTAG |
| Transcript | >Pro_DTO377G3_2|g8091.t1 ATGTCCGAGAAATCTGTGGTTGGCCTAGCGCCTCCTGTTCCTGATCAACCTACCACCAACATAGCCAGTATAGCT GAGACAAGCGACGATCTGCAGAATATACAAGACCAGTATGATGCAGAACGTAAGAAACGCCTACGCCCTGACGGA CCAACCCAATATGTTGACTTGACCGATGACCCCGCCTACTTGAACGAATTCATCGTCGTCAACACCGATATGCTC CAGCAGAGGCAAACCCGAGTCCTCATCGTCGGTGCTGGGTTCGGAGGTCTGCTATTCGCAGTGCGACTGCTCCAA TCTGGATTCCTCCGTGCGAGTGAAATCCTCTTCGTGGATGCAGCAGGTGGCTTTGGAGGAACGTGGTGGTGGAAC AAATACCCCGGCTTGGTCTGCGATGTCGAGAGCTACACTTACATGCCCTTGCTAGAGGAAACGAAGTACATGCCG CCGCATAAGTATGTCAGCGGGTCGGAATTGAGGCGACACGCGAAGCGCATTGCCAGTCAATGGAAGCTCAGCCAG CGGGCTTTGTTCCAGACCGAGGTCGATAACTTGGTTTGGAATGAGCGGGATTCTCAATGGACTGTCAATATTAAA CCTCGTGGCCAGCGATCCACTGCGATACAGTCTGATTTTGTTATCTTGGCTACTGGGTTGCTGAGTTCACCGAAG ATACCGAAATTGGACGGGCTTGAGACGTTCGAGGGGAAGGTTTTCCACACCTCGCGCTGGGACTATGATTACACC GGCGGAAGTCCAGACAGCCCGATGATGGATGGACTACGAGACAAGACAGTTGGATTTGTCGGAACGGGCGCATCT GCCGTCCAGGTGATCCCACACCTTGCCGGGTGGGCAAAGAAATTGATTGTCTTTCAGCGCACACCGTCTTCTGTG GATTCGCGTTACAATCACCTCACCGATCGCACCTGGTGGGCGAAACTGATCAAAGGAGGCCCCGGTTGGCAACGA AAGCGCATGGAGAATTTCAATGCCTTCTGCTCGAACGAGAGTCCCCTCCCAGATGTTGACCTTGTCGATGATGGT TGGACCAAGATGCAGTCCCTCGGTGTACTGATCGGCAGTCCCTCCGGTCTTGACCCGGACTACCTAACGCGGATG CATCAATTGGACTTGCAACGCCAAGAGGCGATCCGCCATCGCGTGGAAACCACTGTGGCCGATCCCGCTACTGCT AGTGCTTTGAAGCCGTGGTATCCTGGATGGTGCAAGCGGCCATGCTTCAGCGACAACTTTCTCCCGGCATTCAAC CGGCCCGACGTTTCCCTGGTGGACACGAACGGAAAAGGGATCCGGACTGTGACAGAGAAAGGCATCTTGGTAGAG GGCCAAGAGTATGACCTGGACACCATCATTTTCGGAACCGGCTACAGTCTTGGGGGTAGTGCCGATCGCGGGGCT ATGACCGTCACCGGACGTGACAACCAGATCCTGCCGGAAAAATGGCAGAAGGGCATGACTTCACTCCATGGAGTA ATGACCAATGGGTTTCCCAATCTGTTCTTCCCAGGTCCGTATCAAGCAGGAGCATCAGCGAACCAGGTCTATGTT CTCGATCAGCTTGCCGTTCATGTCGCCTACATCATTTCGGAAGCCGGCAAGTTGATCTCGGAGCGAAACCCAGAT GTCACCGTGCCCGGGCTTACTATTGAGCCGGACTGTCGCTCCGAAGAGGAATGGACTTCGAAGGTTTTGATGAGA GCCCGAGCGCTCAGAGGTGTGATGGATTGCACTCCGGGGTACTTCAATCGGGAGGGACTCCAATTTGACGACGGT GAAGCCTTGCGGGCGGCGCAGTTCAGTATCTGGGGAGAGGGGATTAAGAGTTATGTGAAGGAGATTGAAGATTGG CGGCAGACGGGCGGGTTGGCCGGGCTTGATATTCAGGCCCGACATGGCGCGTAG |
| Gene | >Pro_DTO377G3_2|g8091.t1 ATGTCCGAGAAATCTGTGGTTGGCCTAGCGCCTCCTGTTCCTGATCAACCTACCACCAACATAGCCAGTATAGCT GAGACAAGCGACGATCTGCAGAATATACAAGACCAGTATGATGCAGAACGTAAGAAACGCCTACGCCCTGACGGA CCAACCCAATATGTTGACTTGACCGATGACCCCGCCTACTTGAACGAATTCATCGTCGTCAACACCGATATGCTC CAGCAGAGGCAAACCCGAGTCCTCATCGTCGGTGCTGGGTTCGGAGGTCTGCTATTCGCAGTGCGACTGCTCCAA TCTGGATTCCTCCGTGCGAGTGAAATCCTCTTCGTGGATGCAGCAGGTGGCTTTGGAGGAACGTGGTGGTGGAAC AAATACCCCGGCTTGGTCTGCGATGTCGAGAGCTACACTTACATGCCCTTGCTAGAGGAAACGAAGTACATGCCG CCGCATAAGTATGTCAGCGGGTCGGAATTGAGGCGACACGCGAAGCGCATTGCCAGTCAATGGAAGCTCAGCCAG CGGGCTTTGTTCCAGACCGAGGTCGATAACTTGGTTTGGAATGAGCGGGATTCTCAATGGACTGTCAATATTAAA CCTCGTGGCCAGCGATCCACTGCGATACAGTCTGATTTTGTTATCTTGGCTACTGGGTTGCTGAGTTCACCGAAG ATACCGAAATTGGACGGGCTTGAGACGTTCGAGGGGAAGGTTTTCCACACCTCGCGCTGGGACTATGATTACACC GGCGGAAGTCCAGACAGCCCGATGATGGATGGACTACGAGACAAGACAGTTGGATTTGTCGGAACGGGCGCATCT GCCGTCCAGGTGATCCCACACCTTGCCGGGTGGGCAAAGAAATTGATTGTCTTTCAGCGCACACCGTCTTCTGTG GATTCGCGTTACAATCACCTCACCGATCGCACCTGGTGGGCGAAACTGATCAAAGGAGGCCCCGGTTGGCAACGA AAGCGCATGGAGAATTTCAATGCCTTCTGCTCGAACGAGAGTCCCCTCCCAGATGTTGACCTTGTCGATGATGGT TGGACCAAGATGCAGTCCCTCGGTGTACTGATCGGCAGTCCCTCCGGTCTTGACCCGGACTACCTAACGCGGATG CATCAATTGGACTTGCAACGCCAAGAGGCGATCCGCCATCGCGTGGAAACCACTGTGGCCGATCCCGCTACTGCT AGTGCTTTGAAGCCGTGGTATCCTGGATGGTGCAAGCGGCCATGCTTCAGCGACAACTTTCTCCCGGCATTCAAC CGGCCCGACGTTTCCCTGGTGGACACGAACGGAAAAGGGATCCGGACTGTGACAGAGAAAGGCATCTTGGTAGAG GGCCAAGAGTATGACCTGGACACCATCATTTTCGGAACCGGCTACAGTCTTGGGGGTAGTGCCGATCGCGGGGCT ATGACCGTCACCGGACGTGACAACCAGATCCTGCCGGAAAAATGGCAGAAGGGCATGACTTCACTCCATGGAGTA ATGACCAATGGGTTTCCCAATCTGTTCTTCCCAGGTCCGTATCAAGCAGGAGCATCAGCGAACCAGGTCTATGTT CTCGATCAGCTTGCCGTTCATGTCGCCTACATCATTTCGGAAGCCGGCAAGTTGATCTCGGAGCGAAACCCAGAT GTCACCGTGCCCGGGCTTACTATTGAGCCGGACTGTCGCTCCGAAGAGGAATGGACTTCGAAGGTTTTGATGAGA GCCCGAGCGCTCAGAGGTGTGATGGATTGCACTCCGGGGTACTTCAATCGGGAGGGACTCCAATTTGACGACGGT GAAGCCTTGCGGGCGGCGCAGTTCAGTATCTGGGGAGAGGGGATTAAGAGTTATGTGAAGGAGATTGAAGATTGG CGGCAGACGGGCGGGTTGGCCGGGCTTGATATTCAGGCCCGACATGGCGCGTAG |