© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8068.t1 |
| Gene name | |
| Location | scaffold_29:8869..10752 |
| Strand | + |
| Gene length (bp) | 1883 |
| Transcript length (bp) | 1830 |
| Coding sequence length (bp) | 1830 |
| Protein length (aa) | 610 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07287 | AtuA | Acyclic terpene utilisation family protein AtuA | 3.2E-134 | 9 | 365 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 10.49 | 4.84 | 16.13 |
| 5d_25C | Five days - 25 degrees Celsius | 6.02 | 2.38 | 9.66 |
| 7d_25C | Seven days - 25 degrees Celsius | 6.03 | 2.38 | 9.67 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.88 | 0.76 | 5.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.35 | 1.07 | 5.63 |
| 7d_30C | Seven days - 30 degrees Celsius | 4.53 | 1.61 | 7.46 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.079412 | no |
| 3d_25C | 7d_25C | 0.081084 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.008807 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.997843 | no |
| 5d_25C | 7d_15C | 0.104340 | no |
| 5d_25C | 7d_30C | 0.482586 | no |
| 5d_25C | 10d_25C | 0.052761 | no |
| 7d_25C | 7d_15C | 0.103972 | no |
| 7d_25C | 7d_30C | 0.482505 | no |
| 7d_25C | 10d_25C | 0.052547 | no |
| 7d_15C | 7d_30C | 0.487809 | no |
| 7d_15C | 10d_25C | 0.780894 | no |
| 7d_30C | 10d_25C | 0.278993 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8068.t1 MPPKRDIRIGNVSGATGDSPHAMRRMAQDGNVDVIVGDWLSEMNIAWNAIAKDQDPSLGYEAGFLTQLSESIDLI VEKGIKVITNAGALNTQALAAQVQEMCRARGHKDVVIAMVLGDDISQTVTDPAKCQNLLHLDHPDWALKDWQLEP YCGVAYIGGWGIVEGIKAGADIIICGRVTDASPVIGAAAWWHNWARDDWDRLAGGLVAGHLIECGPYVTGANFSG FKSILPELVDLAFPIAEITSEGSCTITKPEAHAGAVTKHNTIAQFLYELQGEQYLNPDVVANLHNVTMEQVAPNR VHVHGITGSPPPATTKAMIAAKGGYQAEATFYINGLDVSEKVEMMRNQLLHIFRDHKFSKFSIELYGTPASNPSS QQAGTVFLRVFAQAKKKEDICAEKFKIPIYALRMQSYPGYHMNLDFRTMDPKPFMEIFPVIISMASLDHQTHVLG STVSSPILIEPPKITSKYPDIRDSYETANAVDLASFGPTQLAPLGHIVHARSGDKADNSNIGFFVRNQDEYPWLQ SFLTVSRIKSLFGDDWTKGENHADRRVERCEFPNIFAVHFRVLDFLDGGIASSSRIDGLGKGIGEYLRSKVVPIP VQFLERGCI* |
| Coding | >Pro_DTO377G3_2|g8068.t1 ATGCCCCCTAAACGCGATATCCGCATCGGAAATGTCTCCGGCGCAACCGGCGACAGCCCGCACGCCATGCGGCGC ATGGCGCAAGATGGCAACGTCGATGTAATTGTCGGTGACTGGCTTTCAGAGATGAACATTGCCTGGAACGCCATT GCCAAAGACCAAGATCCATCGTTAGGCTACGAAGCGGGCTTTTTGACGCAATTATCTGAATCCATTGATCTAATC GTGGAGAAAGGGATCAAGGTCATTACTAATGCGGGTGCTTTAAATACACAGGCTCTGGCTGCGCAGGTGCAGGAG ATGTGTCGTGCGCGGGGCCACAAGGATGTGGTGATTGCCATGGTTTTGGGGGATGATATCTCCCAGACTGTAACC GATCCTGCTAAGTGCCAGAACCTCTTGCATCTCGACCATCCAGATTGGGCACTCAAGGACTGGCAATTGGAGCCA TACTGTGGAGTGGCGTATATTGGAGGCTGGGGTATCGTCGAAGGAATCAAAGCGGGGGCTGATATCATTATTTGC GGTCGAGTCACGGATGCATCACCAGTGATTGGAGCTGCCGCATGGTGGCACAATTGGGCTCGAGATGATTGGGAT CGACTTGCAGGTGGCTTAGTTGCGGGCCATTTGATCGAGTGCGGGCCATATGTGACAGGTGCCAACTTCTCTGGA TTCAAATCTATCCTCCCTGAGCTGGTGGACCTCGCATTTCCTATCGCGGAGATCACTAGCGAAGGAAGTTGCACC ATCACAAAGCCCGAGGCACATGCCGGAGCCGTGACAAAACACAACACCATCGCTCAATTCCTGTACGAACTCCAG GGAGAACAGTACCTAAACCCGGACGTGGTTGCCAACCTCCACAATGTGACCATGGAGCAGGTCGCCCCGAATCGG GTACACGTACATGGTATCACCGGATCTCCCCCACCGGCAACGACCAAGGCAATGATTGCAGCCAAGGGCGGATAC CAGGCCGAGGCTACATTCTACATCAACGGGCTCGACGTCTCGGAGAAAGTCGAGATGATGCGCAACCAGCTCCTG CACATCTTCCGAGACCACAAATTTAGCAAGTTCTCAATCGAGCTATATGGAACCCCTGCATCAAATCCCAGTAGC CAGCAGGCTGGCACGGTCTTCCTACGTGTTTTCGCGCAGGCTAAAAAGAAGGAAGATATCTGTGCGGAGAAGTTC AAGATCCCAATATACGCGCTACGAATGCAGAGCTACCCTGGATATCATATGAATCTCGACTTCCGGACCATGGAC CCAAAGCCGTTCATGGAAATATTCCCAGTCATCATCTCGATGGCGTCTCTTGACCACCAAACACATGTTTTGGGA AGCACCGTTTCCAGCCCGATTTTGATTGAGCCCCCGAAGATAACCTCCAAGTACCCCGATATCAGAGATTCCTAC GAGACTGCAAATGCAGTCGATTTGGCGAGCTTTGGGCCTACGCAACTAGCTCCCTTGGGCCACATTGTCCACGCC CGATCCGGAGACAAGGCAGACAACTCCAATATTGGTTTCTTCGTCAGAAATCAGGACGAATATCCTTGGCTGCAG TCATTCCTGACGGTTTCCCGGATCAAAAGCCTATTCGGAGATGACTGGACGAAGGGCGAGAATCATGCCGATAGA AGGGTGGAAAGGTGTGAGTTCCCCAATATTTTCGCCGTTCATTTCCGGGTACTAGACTTCTTGGACGGGGGTATT GCGAGCTCCAGCAGGATCGACGGCTTAGGGAAGGGGATTGGGGAATACTTGAGAAGTAAGGTTGTTCCCATCCCG GTACAATTTTTAGAGAGAGGATGTATTTAA |
| Transcript | >Pro_DTO377G3_2|g8068.t1 ATGCCCCCTAAACGCGATATCCGCATCGGAAATGTCTCCGGCGCAACCGGCGACAGCCCGCACGCCATGCGGCGC ATGGCGCAAGATGGCAACGTCGATGTAATTGTCGGTGACTGGCTTTCAGAGATGAACATTGCCTGGAACGCCATT GCCAAAGACCAAGATCCATCGTTAGGCTACGAAGCGGGCTTTTTGACGCAATTATCTGAATCCATTGATCTAATC GTGGAGAAAGGGATCAAGGTCATTACTAATGCGGGTGCTTTAAATACACAGGCTCTGGCTGCGCAGGTGCAGGAG ATGTGTCGTGCGCGGGGCCACAAGGATGTGGTGATTGCCATGGTTTTGGGGGATGATATCTCCCAGACTGTAACC GATCCTGCTAAGTGCCAGAACCTCTTGCATCTCGACCATCCAGATTGGGCACTCAAGGACTGGCAATTGGAGCCA TACTGTGGAGTGGCGTATATTGGAGGCTGGGGTATCGTCGAAGGAATCAAAGCGGGGGCTGATATCATTATTTGC GGTCGAGTCACGGATGCATCACCAGTGATTGGAGCTGCCGCATGGTGGCACAATTGGGCTCGAGATGATTGGGAT CGACTTGCAGGTGGCTTAGTTGCGGGCCATTTGATCGAGTGCGGGCCATATGTGACAGGTGCCAACTTCTCTGGA TTCAAATCTATCCTCCCTGAGCTGGTGGACCTCGCATTTCCTATCGCGGAGATCACTAGCGAAGGAAGTTGCACC ATCACAAAGCCCGAGGCACATGCCGGAGCCGTGACAAAACACAACACCATCGCTCAATTCCTGTACGAACTCCAG GGAGAACAGTACCTAAACCCGGACGTGGTTGCCAACCTCCACAATGTGACCATGGAGCAGGTCGCCCCGAATCGG GTACACGTACATGGTATCACCGGATCTCCCCCACCGGCAACGACCAAGGCAATGATTGCAGCCAAGGGCGGATAC CAGGCCGAGGCTACATTCTACATCAACGGGCTCGACGTCTCGGAGAAAGTCGAGATGATGCGCAACCAGCTCCTG CACATCTTCCGAGACCACAAATTTAGCAAGTTCTCAATCGAGCTATATGGAACCCCTGCATCAAATCCCAGTAGC CAGCAGGCTGGCACGGTCTTCCTACGTGTTTTCGCGCAGGCTAAAAAGAAGGAAGATATCTGTGCGGAGAAGTTC AAGATCCCAATATACGCGCTACGAATGCAGAGCTACCCTGGATATCATATGAATCTCGACTTCCGGACCATGGAC CCAAAGCCGTTCATGGAAATATTCCCAGTCATCATCTCGATGGCGTCTCTTGACCACCAAACACATGTTTTGGGA AGCACCGTTTCCAGCCCGATTTTGATTGAGCCCCCGAAGATAACCTCCAAGTACCCCGATATCAGAGATTCCTAC GAGACTGCAAATGCAGTCGATTTGGCGAGCTTTGGGCCTACGCAACTAGCTCCCTTGGGCCACATTGTCCACGCC CGATCCGGAGACAAGGCAGACAACTCCAATATTGGTTTCTTCGTCAGAAATCAGGACGAATATCCTTGGCTGCAG TCATTCCTGACGGTTTCCCGGATCAAAAGCCTATTCGGAGATGACTGGACGAAGGGCGAGAATCATGCCGATAGA AGGGTGGAAAGGTGTGAGTTCCCCAATATTTTCGCCGTTCATTTCCGGGTACTAGACTTCTTGGACGGGGGTATT GCGAGCTCCAGCAGGATCGACGGCTTAGGGAAGGGGATTGGGGAATACTTGAGAAGTAAGGTTGTTCCCATCCCG GTACAATTTTTAGAGAGAGGATGTATTTAA |
| Gene | >Pro_DTO377G3_2|g8068.t1 ATGCCCCCTAAACGCGATATCCGCATCGGAAATGTCTCCGGCGCAACCGGCGACAGCCCGCACGCCATGCGGCGC ATGGCGCAAGATGGCAACGTCGATGTAATTGTCGGTGACTGGCTTTCAGAGATGAACATTGCCTGGAACGCCATT GCCAAAGACCAAGATCCATCGTTAGGCTACGAAGCGGGCTTTTTGACGCAATTATCTGAATCCATTGATCTAATC GTGGAGAAAGGGATCAAGGTCATTACTAATGCGGGTGCTTTAAATACACAGGCTCTGGCTGCGCAGGTGCAGGAG ATGTGTCGTGCGCGGGGCCACAAGGATGTGGTGATTGCCATGGTTTTGGGGGATGATATCTCCCAGACTGTAACC GATCCTGCTAAGTGCCAGAACCTCTTGCATCTCGACCATCCAGATTGGGCACTCAAGGACTGGCAATTGGAGCCA TACTGTGGAGTGGCGTATATTGGAGGCTGGGGTATCGTCGAAGGAATCAAAGCGGGGGCTGATATCATTATTTGC GGTCGAGTCACGGATGCATCACCAGTGATTGGAGCTGCCGCATGGTGGCACAATTGGGCTCGAGATGATTGGGAT CGACTTGCAGGTGGCTTAGTTGCGGGCCGTGAGTATTCTTCGTATAGCGAATAATTGGCTAAATTGACTAACTAA GTATAGATTTGATCGAGTGCGGGCCATATGTGACAGGTGCCAACTTCTCTGGATTCAAATCTATCCTCCCTGAGC TGGTGGACCTCGCATTTCCTATCGCGGAGATCACTAGCGAAGGAAGTTGCACCATCACAAAGCCCGAGGCACATG CCGGAGCCGTGACAAAACACAACACCATCGCTCAATTCCTGTACGAACTCCAGGGAGAACAGTACCTAAACCCGG ACGTGGTTGCCAACCTCCACAATGTGACCATGGAGCAGGTCGCCCCGAATCGGGTACACGTACATGGTATCACCG GATCTCCCCCACCGGCAACGACCAAGGCAATGATTGCAGCCAAGGGCGGATACCAGGCCGAGGCTACATTCTACA TCAACGGGCTCGACGTCTCGGAGAAAGTCGAGATGATGCGCAACCAGCTCCTGCACATCTTCCGAGACCACAAAT TTAGCAAGTTCTCAATCGAGCTATATGGAACCCCTGCATCAAATCCCAGTAGCCAGCAGGCTGGCACGGTCTTCC TACGTGTTTTCGCGCAGGCTAAAAAGAAGGAAGATATCTGTGCGGAGAAGTTCAAGATCCCAATATACGCGCTAC GAATGCAGAGCTACCCTGGATATCATATGAATCTCGACTTCCGGACCATGGACCCAAAGCCGTTCATGGAAATAT TCCCAGTCATCATCTCGATGGCGTCTCTTGACCACCAAACACATGTTTTGGGAAGCACCGTTTCCAGCCCGATTT TGATTGAGCCCCCGAAGATAACCTCCAAGTACCCCGATATCAGAGATTCCTACGAGACTGCAAATGCAGTCGATT TGGCGAGCTTTGGGCCTACGCAACTAGCTCCCTTGGGCCACATTGTCCACGCCCGATCCGGAGACAAGGCAGACA ACTCCAATATTGGTTTCTTCGTCAGAAATCAGGACGAATATCCTTGGCTGCAGTCATTCCTGACGGTTTCCCGGA TCAAAAGCCTATTCGGAGATGACTGGACGAAGGGCGAGAATCATGCCGATAGAAGGGTGGAAAGGTGTGAGTTCC CCAATATTTTCGCCGTTCATTTCCGGGTACTAGACTTCTTGGACGGGGGTATTGCGAGCTCCAGCAGGATCGACG GCTTAGGGAAGGGGATTGGGGAATACTTGAGAAGTAAGGTTGTTCCCATCCCGGTACAATTTTTAGAGAGAGGAT GTATTTAA |