© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8047.t1 |
| Gene name | |
| Location | scaffold_28:218171..220003 |
| Strand | + |
| Gene length (bp) | 1832 |
| Transcript length (bp) | 1557 |
| Coding sequence length (bp) | 1557 |
| Protein length (aa) | 519 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 6.7E-49 | 42 | 490 |
| PF00324 | AA_permease | Amino acid permease | 1.6E-19 | 58 | 501 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 38 | 60 | 22 |
| 2 | 75 | 97 | 22 |
| 3 | 127 | 149 | 22 |
| 4 | 169 | 191 | 22 |
| 5 | 198 | 220 | 22 |
| 6 | 235 | 257 | 22 |
| 7 | 278 | 300 | 22 |
| 8 | 328 | 350 | 22 |
| 9 | 383 | 405 | 22 |
| 10 | 410 | 432 | 22 |
| 11 | 445 | 467 | 22 |
| 12 | 482 | 501 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8047.t1 MKEALANNVLSQDVGIDATDQDDWDMQRLGKTQQFKRNFRFYSILGFTTTLMATWESILLTSTYGLIDGGRAGMV YVYIASFVGFFSAVISMAEIASISPTSGGQYHWVSEFAWPRCQRFLSYLTGWLSVLGWQAAFASICYLCGTLIQG LLVFNYSDPSGWLYGFERWHGTLLTIGIAAVGTVVNTWGYKILPPMEGLILAIHLFGFVVVVVLMWVMSPGQASG DSVWKEFTNAGEWPSMGLACLVGQLTPIFSWTGPDAATHMSEEVQNAALVVPWCMVSTALINGALGFVMLITLLY KMGDLQDVLAPASGFSFLPAVNHATGSMAATNGVAAIILVMEVCSAIGILATVSRQTFAFARDDALPFSKQLAHV NRRTQIPIFSVLVSTIITVLLSLINIGSTAAFNAVASVMIAALFTTYILPIAAIIRVRFQPGGIPPSRFSLGIFG LPINVFSLAWLCFAIIFTFFPTTNNPTLVDMNWSILVFGAVVIFAIVLYIVHGRRVYRSPVTQVRKVQ* |
| Coding | >Pro_DTO377G3_2|g8047.t1 ATGAAGGAAGCATTGGCCAACAACGTGTTGTCGCAGGACGTCGGAATCGACGCGACCGACCAGGATGATTGGGAC ATGCAGCGCCTTGGAAAGACCCAACAGTTCAAGAGAAACTTCCGTTTTTATTCGATCTTAGGTTTCACAACGACG TTGATGGCCACATGGGAGTCGATTCTGCTCACGAGTACATACGGCTTGATTGATGGCGGACGAGCCGGCATGGTC TATGTGTATATTGCTTCATTTGTCGGATTCTTCTCCGCCGTGATCTCCATGGCTGAGATTGCCTCCATCTCCCCA ACATCGGGTGGACAGTATCACTGGGTCAGTGAATTCGCCTGGCCAAGGTGCCAACGATTCTTGAGCTATCTCACC GGATGGCTTTCGGTACTAGGCTGGCAAGCTGCGTTTGCGAGTATTTGCTACCTTTGCGGTACTCTGATTCAAGGA CTGCTAGTCTTCAACTACTCGGATCCCTCCGGTTGGCTATATGGCTTTGAGCGCTGGCATGGGACACTGCTGACT ATCGGCATCGCCGCCGTCGGAACTGTGGTGAATACCTGGGGCTACAAGATTCTCCCTCCAATGGAGGGTCTGATC CTCGCCATTCACCTCTTCGGTTTCGTTGTTGTCGTTGTCCTCATGTGGGTCATGTCTCCAGGACAGGCCTCTGGG GATTCTGTCTGGAAGGAGTTTACAAACGCTGGCGAATGGCCGAGCATGGGCCTCGCGTGTCTGGTGGGCCAACTG ACTCCGATCTTTTCCTGGACGGGCCCGGATGCTGCTACACATATGTCCGAGGAGGTCCAGAATGCTGCCTTGGTG GTGCCGTGGTGTATGGTTTCGACCGCTTTGATCAACGGCGCTCTGGGTTTCGTGATGCTAATCACCTTGCTGTAT AAGATGGGAGACTTGCAGGATGTACTCGCCCCGGCGAGTGGATTCTCCTTCCTCCCAGCAGTTAATCATGCAACC GGCTCGATGGCTGCTACTAATGGTGTGGCTGCTATCATTCTTGTCATGGAAGTTTGCAGCGCCATTGGTATTCTT GCCACAGTCTCTCGCCAGACCTTCGCTTTTGCCCGCGATGATGCCTTGCCGTTCTCTAAGCAGTTGGCTCACGTT AATCGACGCACCCAGATCCCTATCTTCTCCGTGTTGGTATCGACCATTATTACCGTGCTACTGAGCTTGATCAAC ATCGGATCTACGGCGGCTTTCAATGCTGTCGCATCTGTGATGATCGCTGCACTTTTCACCACGTACATCCTGCCG ATTGCTGCCATCATTCGGGTCCGTTTCCAACCGGGTGGTATTCCCCCTTCGCGATTTTCGCTCGGTATCTTTGGA TTGCCGATCAATGTTTTCTCATTGGCCTGGCTTTGCTTTGCCATCATTTTCACCTTCTTCCCAACCACCAATAAC CCGACTCTGGTGGATATGAATTGGTCTATCCTTGTCTTCGGAGCGGTGGTCATATTTGCAATTGTTTTGTACATT GTACACGGTCGCCGAGTATATCGTTCACCTGTGACCCAAGTGCGCAAGGTTCAATAG |
| Transcript | >Pro_DTO377G3_2|g8047.t1 ATGAAGGAAGCATTGGCCAACAACGTGTTGTCGCAGGACGTCGGAATCGACGCGACCGACCAGGATGATTGGGAC ATGCAGCGCCTTGGAAAGACCCAACAGTTCAAGAGAAACTTCCGTTTTTATTCGATCTTAGGTTTCACAACGACG TTGATGGCCACATGGGAGTCGATTCTGCTCACGAGTACATACGGCTTGATTGATGGCGGACGAGCCGGCATGGTC TATGTGTATATTGCTTCATTTGTCGGATTCTTCTCCGCCGTGATCTCCATGGCTGAGATTGCCTCCATCTCCCCA ACATCGGGTGGACAGTATCACTGGGTCAGTGAATTCGCCTGGCCAAGGTGCCAACGATTCTTGAGCTATCTCACC GGATGGCTTTCGGTACTAGGCTGGCAAGCTGCGTTTGCGAGTATTTGCTACCTTTGCGGTACTCTGATTCAAGGA CTGCTAGTCTTCAACTACTCGGATCCCTCCGGTTGGCTATATGGCTTTGAGCGCTGGCATGGGACACTGCTGACT ATCGGCATCGCCGCCGTCGGAACTGTGGTGAATACCTGGGGCTACAAGATTCTCCCTCCAATGGAGGGTCTGATC CTCGCCATTCACCTCTTCGGTTTCGTTGTTGTCGTTGTCCTCATGTGGGTCATGTCTCCAGGACAGGCCTCTGGG GATTCTGTCTGGAAGGAGTTTACAAACGCTGGCGAATGGCCGAGCATGGGCCTCGCGTGTCTGGTGGGCCAACTG ACTCCGATCTTTTCCTGGACGGGCCCGGATGCTGCTACACATATGTCCGAGGAGGTCCAGAATGCTGCCTTGGTG GTGCCGTGGTGTATGGTTTCGACCGCTTTGATCAACGGCGCTCTGGGTTTCGTGATGCTAATCACCTTGCTGTAT AAGATGGGAGACTTGCAGGATGTACTCGCCCCGGCGAGTGGATTCTCCTTCCTCCCAGCAGTTAATCATGCAACC GGCTCGATGGCTGCTACTAATGGTGTGGCTGCTATCATTCTTGTCATGGAAGTTTGCAGCGCCATTGGTATTCTT GCCACAGTCTCTCGCCAGACCTTCGCTTTTGCCCGCGATGATGCCTTGCCGTTCTCTAAGCAGTTGGCTCACGTT AATCGACGCACCCAGATCCCTATCTTCTCCGTGTTGGTATCGACCATTATTACCGTGCTACTGAGCTTGATCAAC ATCGGATCTACGGCGGCTTTCAATGCTGTCGCATCTGTGATGATCGCTGCACTTTTCACCACGTACATCCTGCCG ATTGCTGCCATCATTCGGGTCCGTTTCCAACCGGGTGGTATTCCCCCTTCGCGATTTTCGCTCGGTATCTTTGGA TTGCCGATCAATGTTTTCTCATTGGCCTGGCTTTGCTTTGCCATCATTTTCACCTTCTTCCCAACCACCAATAAC CCGACTCTGGTGGATATGAATTGGTCTATCCTTGTCTTCGGAGCGGTGGTCATATTTGCAATTGTTTTGTACATT GTACACGGTCGCCGAGTATATCGTTCACCTGTGACCCAAGTGCGCAAGGTTCAATAG |
| Gene | >Pro_DTO377G3_2|g8047.t1 ATGAAGGAAGCATTGGCCAACAACGTGTTGTCGCAGGACGTCGGAATCGACGCGACCGACCAGGATGATTGGGAC ATGCAGCGCCTTGGAAAGACCCAACAGTTCAAGGTGAGTTGTACATTTCCTAGGACTGGACGCAATACTGATCAG CGATAGAGAAACTTCCGTTTTTATTCGATCTTAGGTTTCACAACGACGTTGATGGCCACATGGGAGTCGATTCTG CTGTGAGTTTGGACGCGCGATCTTATGATAGAACACTGGGAATAATGGAGAATGGCGCAGCACGAGTACATACGG CTTGATTGATGGCGGACGAGCCGGCATGGTCTATGTGTATATTGCTTCATTTGTCGGATTCTTCTCCGCCGTGAT CTCCATGGCTGAGATTGCCTCCATGTAAGTTCCGCCCCCCCCCCCTCGCATGTTGCGCATGGAGCGCATGGAGAT TGACTAGCCAGCTCCCCAACATCGGGTGGACAGTATCACTGGGTCAGTGAATTCGCCTGGCCAAGGTGCCAACGA TTCTTGAGCTATCTCACCGGTTAGCCGAAACCTCGAATTACAACCTGACGATCTCCACCGCTAATCCCGTTCTAG GATGGCTTTCGGTACTAGGCTGGCAAGCTGCGTTTGCGAGTATTTGCTACCTTTGCGGTACTCTGATTCAAGGAC TGCTAGTCTTCAACTACTCGGATCCCTCCGGTTGGCTATATGGCTTTGAGCGCTGGCATGGGACACTGCTGACTA TCGGCATCGCCGCCGTCGGAACTGTGGTGAATACCTGGGGCTACAAGATTCTCCCTCCAATGGAGGGTCTGATCC TCGCCATTCACCTCTTCGGTTTCGTTGTTGTCGTTGTCCTCATGTGGGTCATGTCTCCAGGACAGGCCTCTGGGG ATTCTGTCTGGAAGGAGTTTACAAACGCTGGCGAATGGCCGAGCATGGGCCTCGCGTGTCTGGTGGGCCAACTGA CTCCGATCTTTTCCTGGACGGGCCCGGATGCTGCTACACATATGTGTAAGTCAAACGCCATATCTCTCCTATTTC GCGATGGCTAATGTCTCTTAGCCGAGGAGGTCCAGAATGCTGCCTTGGTGGTGCCGTGGTGTATGGTTTCGACCG CTTTGATCAACGGCGCTCTGGGTTTCGTGATGCTAATCACCTTGCTGTATAAGATGGGAGACTTGCAGGATGTAC TCGCCCCGGCGAGTGGATTCTCCTTCCTCCCAGCAGTTAATCATGCAACCGGCTCGATGGCTGCTACTAATGGTG TGGCTGCTATCATTCTTGTCATGGAAGTTTGCAGCGCCATTGGTATTCTTGCCACAGTCTCTCGCCAGACCTTCG CTTTTGCCCGCGATGATGCCTTGCCGTTCTCTAAGCAGTTGGCTCACGTTAATCGACGCACCCAGATCCCTATCT TCTCCGTGTTGGTATCGACCATTATTACCGTGCTACTGAGCTTGATCAACATCGGATCTACGGCGGCTTTCAATG CTGTCGCATCTGTGATGATCGCTGCACTTTTCACCACGTACATCCTGCCGATTGCTGCCATCATTCGGGTCCGTT TCCAACCGGGTGGTATTCCCCCTTCGCGATTTTCGCTCGGTATCTTTGGATTGCCGATCAATGTTTTCTCATTGG CCTGGCTTTGCTTTGCCATCATTTTCACCTTCTTCCCAACCACCAATAACCCGACTCTGGTGGATATGAATTGGT CTATCCTTGTCTTCGGAGCGGTGGTCATATTTGCAATTGTTTTGTACATTGTACACGGTCGCCGAGTATATCGTT CACCTGTGACCCAAGTGCGCAAGGTTCAATAG |