© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8043.t1 |
| Gene name | |
| Location | scaffold_28:196062..196689 |
| Strand | - |
| Gene length (bp) | 627 |
| Transcript length (bp) | 549 |
| Coding sequence length (bp) | 549 |
| Protein length (aa) | 183 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00959 | Phage_lysozyme | Phage lysozyme | 3.8E-16 | 49 | 163 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016998 | cell wall macromolecule catabolic process | Yes |
| GO:0009253 | peptidoglycan catabolic process | Yes |
| GO:0003796 | lysozyme activity | Yes |
| GO:0044036 | cell wall macromolecule metabolic process | No |
| GO:1901136 | carbohydrate derivative catabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0009056 | catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0000270 | peptidoglycan metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901565 | organonitrogen compound catabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0006022 | aminoglycan metabolic process | No |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0006027 | glycosaminoglycan catabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0006026 | aminoglycan catabolic process | No |
| GO:0061783 | peptidoglycan muralytic activity | No |
| GO:0030203 | glycosaminoglycan metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 10.28 | 2.46 | 18.09 |
| 5d_25C | Five days - 25 degrees Celsius | 9.79 | 2.04 | 17.55 |
| 7d_25C | Seven days - 25 degrees Celsius | 9.83 | 1.96 | 17.69 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.08 | 3.52 | 22.63 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.79 | 0.87 | 12.72 |
| 7d_30C | Seven days - 30 degrees Celsius | 15.14 | 4.14 | 26.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.943472 | no |
| 3d_25C | 7d_25C | 0.945963 | no |
| 3d_25C | 7d_15C | 0.413257 | no |
| 3d_25C | 7d_30C | 0.402670 | no |
| 3d_25C | 10d_25C | 0.641231 | no |
| 5d_25C | 7d_25C | 0.995455 | no |
| 5d_25C | 7d_15C | 0.505111 | no |
| 5d_25C | 7d_30C | 0.360842 | no |
| 5d_25C | 10d_25C | 0.580605 | no |
| 7d_25C | 7d_15C | 0.488223 | no |
| 7d_25C | 7d_30C | 0.345889 | no |
| 7d_25C | 10d_25C | 0.574117 | no |
| 7d_15C | 7d_30C | 0.075022 | no |
| 7d_15C | 10d_25C | 0.158075 | no |
| 7d_30C | 10d_25C | 0.798175 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8043.t1 MSFKLLLATLPALAFAACTGPAVNTNGLDLIKSFESFQANVYDDGYGNPTIGYGHLCSDSTCSEVTFSKPLTEDT ASQLLAKDLVTYQNGVTNALATAVTLNDNQYAALVSWTFNVGVGNMQSSSLVSRMNAGENVETVASEELPKWNKA NGAVVAGLTRRRADEVKLFEEASQTKALPVGC* |
| Coding | >Pro_DTO377G3_2|g8043.t1 ATGTCGTTCAAGCTCCTGCTTGCCACCCTCCCAGCCCTGGCATTTGCTGCCTGCACCGGTCCTGCTGTCAACACC AACGGCCTTGATCTAATCAAGAGCTTTGAATCCTTCCAAGCAAACGTGTACGATGATGGCTACGGCAATCCCACC ATCGGCTACGGCCATCTCTGCAGCGACTCCACTTGCTCGGAAGTGACATTCTCCAAGCCATTGACCGAGGATACA GCGAGCCAATTGCTTGCCAAAGACCTAGTGACCTACCAAAATGGCGTAACAAACGCCCTTGCCACCGCGGTTACT CTGAACGACAACCAGTACGCGGCGCTCGTTTCGTGGACGTTCAACGTCGGCGTCGGGAACATGCAGTCATCCAGT CTAGTCAGCCGCATGAATGCCGGTGAGAATGTGGAGACTGTGGCATCTGAGGAATTGCCCAAGTGGAATAAAGCC AATGGGGCGGTTGTTGCTGGGCTGACGCGCCGGCGGGCTGATGAAGTGAAGCTGTTCGAGGAGGCTTCTCAGACC AAGGCTTTGCCTGTTGGCTGTTAA |
| Transcript | >Pro_DTO377G3_2|g8043.t1 ATGTCGTTCAAGCTCCTGCTTGCCACCCTCCCAGCCCTGGCATTTGCTGCCTGCACCGGTCCTGCTGTCAACACC AACGGCCTTGATCTAATCAAGAGCTTTGAATCCTTCCAAGCAAACGTGTACGATGATGGCTACGGCAATCCCACC ATCGGCTACGGCCATCTCTGCAGCGACTCCACTTGCTCGGAAGTGACATTCTCCAAGCCATTGACCGAGGATACA GCGAGCCAATTGCTTGCCAAAGACCTAGTGACCTACCAAAATGGCGTAACAAACGCCCTTGCCACCGCGGTTACT CTGAACGACAACCAGTACGCGGCGCTCGTTTCGTGGACGTTCAACGTCGGCGTCGGGAACATGCAGTCATCCAGT CTAGTCAGCCGCATGAATGCCGGTGAGAATGTGGAGACTGTGGCATCTGAGGAATTGCCCAAGTGGAATAAAGCC AATGGGGCGGTTGTTGCTGGGCTGACGCGCCGGCGGGCTGATGAAGTGAAGCTGTTCGAGGAGGCTTCTCAGACC AAGGCTTTGCCTGTTGGCTGTTAA |
| Gene | >Pro_DTO377G3_2|g8043.t1 ATGTCGTTCAAGCTCCTGCTTGCCACCCTCCCAGCCCTGGCATTTGCTGCCTGCACCGGTCCTGCTGTCAACACC AACGGCCTTGATCTAATCAAGAGCTTTGAATCCTTCCAAGCAAACGTGTACGATGATGGCTACGGCAATCCCACC ATCGGCTACGGCCATCTCTGCAGCGACTCCACTTGCTCGGAAGTGACATTCTCCAAGCCATTGACCGAGGATACA GCGAGCCAATTGCTTGCCAAAGACCTAGTGGTAAGTCTCTACAAGCACTCTTCCTCCCTAAAACCCCACTATGTA GGTATCTAATGAATGTACTAACCCGGAAAATAGACCTACCAAAATGGCGTAACAAACGCCCTTGCCACCGCGGTT ACTCTGAACGACAACCAGTACGCGGCGCTCGTTTCGTGGACGTTCAACGTCGGCGTCGGGAACATGCAGTCATCC AGTCTAGTCAGCCGCATGAATGCCGGTGAGAATGTGGAGACTGTGGCATCTGAGGAATTGCCCAAGTGGAATAAA GCCAATGGGGCGGTTGTTGCTGGGCTGACGCGCCGGCGGGCTGATGAAGTGAAGCTGTTCGAGGAGGCTTCTCAG ACCAAGGCTTTGCCTGTTGGCTGTTAA |