© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8040.t1 |
| Gene name | |
| Location | scaffold_28:189437..191951 |
| Strand | + |
| Gene length (bp) | 2514 |
| Transcript length (bp) | 2514 |
| Coding sequence length (bp) | 2514 |
| Protein length (aa) | 838 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06738 | ThrE | Putative threonine/serine exporter | 1.1E-70 | 397 | 646 |
| PF12821 | ThrE_2 | Threonine/Serine exporter, ThrE | 7.1E-12 | 676 | 822 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 505 | 523 | 18 |
| 2 | 530 | 548 | 18 |
| 3 | 592 | 614 | 22 |
| 4 | 627 | 649 | 22 |
| 5 | 669 | 688 | 19 |
| 6 | 695 | 712 | 17 |
| 7 | 716 | 738 | 22 |
| 8 | 750 | 772 | 22 |
| 9 | 804 | 826 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 127.00 | 75.73 | 178.27 |
| 5d_25C | Five days - 25 degrees Celsius | 209.51 | 120.36 | 298.67 |
| 7d_25C | Seven days - 25 degrees Celsius | 207.40 | 119.47 | 295.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 253.02 | 142.99 | 363.06 |
| 7d_15C | Seven days - 15 degrees Celsius | 156.87 | 89.33 | 224.40 |
| 7d_30C | Seven days - 30 degrees Celsius | 183.75 | 104.98 | 262.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.021670 | yes |
| 3d_25C | 7d_25C | 0.021921 | yes |
| 3d_25C | 7d_15C | 0.423232 | no |
| 3d_25C | 7d_30C | 0.115508 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.978492 | no |
| 5d_25C | 7d_15C | 0.240706 | no |
| 5d_25C | 7d_30C | 0.662861 | no |
| 5d_25C | 10d_25C | 0.489964 | no |
| 7d_25C | 7d_15C | 0.265168 | no |
| 7d_25C | 7d_30C | 0.689223 | no |
| 7d_25C | 10d_25C | 0.464529 | no |
| 7d_15C | 7d_30C | 0.588705 | no |
| 7d_15C | 10d_25C | 0.036503 | yes |
| 7d_30C | 10d_25C | 0.200076 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8040.t1 MSGIINPHPSPSEEYAEYPLPIIDNPGDRHSLEREATVDVNQYNAGIEPPTRRGSRSHHRVRFRSMSLRRNENDS DPLSRPLLPQSDLNEIPLSGTITPPAPAHSRRGSNVHMPEFDETEKHDFTGKMDRATSARDRFRATGHLLRQKTS RLTERLGRPTDEGEPLNASYNPDDFDSGIPLEELQARRARHEADRAHALESGENFIEPPPSAEAHRLVRSMTAVQ DQLRKRKPRGAYQRSGQTTPEGLISAFTQRRRSSGVGGGILSQLLKLQVAQSGSSSRPESVITDDSDSDTQVSSS ISTPKKGYISPLIPASQPASGAATPRKEKLKWYKKSAHRSTSSLVNASMNLSTASLPAAVEAAPGMQKKRGKSKR KTRLEDEIRVTVHIAEIIARQRYIMQLCRALMRYGAPTHRLEEYMQMTARVLEVSGQFLYLPGCMIMSFDDPTTR TAEVKLVRMVQGVDLGRLADTHNVYKNVVHDLIGVEEATQELDEIMQRKPRFSKWILVLVYGFASAAVGPFAFKA RPIDMPIIFCLGCIVGLMQHVLAPRSTLYSNVFEVTAAILTSFLARAFGSIMVTRNGKSEPLFCFSAMAQSSIAL ILPGFMVLCSSLELQSHQIIAGSIRMVYSIIYSLFLGYGITVGTTIYGLMDGNATSASTCSGLDVYGSVYARTFP FVAVYAIFLAIVNHGKLKQMPVMVFIALSGYVANYFSTTKLGAQSEVANTVGAFTIGVLGNLYSRLWHGHAATAI LPGIFVLVPSGLASSGSLIAGIKYADEVRQNLENNGTSSYSSSLSETSVASLGFGMIQVAIGITVGLFIAALVVY PYGKKRTGLFSF* |
| Coding | >Pro_DTO377G3_2|g8040.t1 ATGTCGGGCATCATCAACCCACACCCAAGCCCAAGTGAAGAATACGCAGAATACCCTCTCCCAATCATTGACAAT CCCGGTGATCGTCATAGCCTCGAGCGTGAAGCCACCGTCGATGTCAACCAATACAATGCCGGGATCGAGCCACCC ACACGCCGTGGGAGCCGATCCCATCATAGGGTTCGCTTTCGCTCGATGAGTCTTCGCCGAAACGAAAATGACTCC GATCCCCTGTCACGACCGTTACTGCCGCAGTCAGATCTCAACGAAATCCCGCTATCCGGAACCATCACACCGCCA GCCCCGGCCCATTCCCGGCGCGGCTCCAATGTGCATATGCCCGAGTTTGATGAAACCGAGAAACATGATTTCACA GGTAAAATGGACCGGGCGACCTCGGCCCGCGACCGGTTCAGAGCGACCGGTCATCTGTTGCGACAGAAAACTAGC CGCTTGACGGAACGCCTCGGTCGCCCCACGGATGAGGGCGAGCCGCTCAATGCCTCTTACAACCCAGACGACTTC GACAGCGGTATTCCACTCGAGGAGCTGCAGGCCCGCCGCGCCCGCCATGAGGCCGACCGAGCGCACGCATTGGAG AGTGGTGAGAATTTTATCGAGCCGCCCCCTAGCGCCGAGGCTCATCGCTTGGTGCGCAGCATGACCGCGGTTCAG GATCAGCTACGGAAGCGCAAACCTCGGGGCGCATATCAGCGGTCGGGACAGACAACTCCCGAGGGCTTGATCAGC GCCTTTACGCAGCGGAGACGGTCTAGTGGAGTCGGCGGCGGCATTCTGTCGCAGTTGCTCAAGCTTCAGGTCGCC CAGAGCGGGAGCTCTTCGCGCCCGGAAAGTGTCATCACCGATGACTCCGACAGTGACACTCAGGTGTCTTCCAGT ATCTCCACCCCGAAGAAGGGTTACATCTCGCCCCTTATCCCTGCGTCTCAGCCAGCCTCTGGTGCCGCCACCCCA CGCAAGGAAAAGCTCAAATGGTACAAGAAGTCAGCCCATCGGTCCACCTCGTCGTTGGTCAATGCCTCCATGAAC CTCAGCACGGCGAGCCTGCCTGCCGCGGTTGAGGCCGCTCCCGGTATGCAAAAGAAACGGGGGAAGAGCAAGCGC AAGACCCGTCTAGAAGATGAGATCCGTGTTACCGTCCATATCGCAGAAATCATCGCACGTCAGCGGTATATCATG CAGCTGTGCCGTGCGCTTATGCGATACGGTGCGCCGACCCATCGTCTGGAGGAGTATATGCAAATGACCGCCAGG GTCCTGGAAGTTTCGGGCCAATTCTTATATCTGCCCGGTTGCATGATCATGTCCTTTGATGATCCTACTACACGC ACGGCCGAAGTCAAGCTTGTACGGATGGTGCAAGGAGTCGACCTTGGTCGCCTTGCTGATACACACAACGTTTAC AAGAATGTCGTTCACGATCTTATCGGCGTCGAAGAGGCAACTCAGGAACTAGACGAGATTATGCAGCGCAAGCCC AGATTCAGTAAATGGATCTTGGTCCTGGTTTACGGTTTTGCTAGTGCAGCGGTCGGCCCGTTCGCTTTCAAAGCG CGACCGATCGATATGCCCATCATCTTCTGTCTCGGTTGCATTGTTGGACTGATGCAGCACGTTCTCGCCCCACGG TCAACTCTCTACTCCAACGTCTTTGAGGTTACTGCTGCTATTCTGACTTCCTTCCTCGCCCGCGCATTTGGCAGC ATCATGGTTACCCGCAATGGTAAATCCGAACCACTTTTCTGCTTCTCCGCTATGGCACAGTCATCTATCGCTCTG ATTCTCCCTGGATTCATGGTCCTTTGTAGCAGTCTGGAGCTGCAATCTCACCAGATCATCGCTGGTTCGATCCGT ATGGTGTATTCCATTATCTACTCCCTCTTTTTGGGCTACGGTATTACAGTGGGGACTACGATCTACGGGCTAATG GATGGCAATGCGACATCTGCATCTACGTGTTCAGGCCTGGATGTCTATGGGTCGGTTTATGCACGCACATTCCCC TTCGTGGCTGTCTACGCTATTTTCCTAGCCATTGTGAACCATGGAAAATTAAAGCAGATGCCCGTCATGGTTTTC ATCGCTTTGTCCGGGTACGTCGCCAACTATTTCAGCACGACCAAACTCGGCGCCCAATCGGAAGTCGCCAACACC GTCGGTGCATTCACTATTGGTGTGCTAGGCAATCTGTACAGTCGGCTCTGGCATGGCCATGCCGCCACCGCCATT CTTCCTGGTATATTTGTGCTGGTCCCCTCTGGCCTTGCTTCTAGTGGCTCTCTGATTGCGGGCATCAAATACGCC GACGAGGTTCGTCAGAACCTTGAAAATAATGGGACTAGTTCATATTCCAGCTCTCTCTCTGAAACTTCAGTTGCC AGTCTTGGTTTCGGCATGATCCAAGTCGCGATCGGTATCACAGTCGGGCTGTTTATCGCGGCTTTGGTTGTCTAC CCCTACGGCAAAAAGCGCACCGGTCTGTTCAGCTTCTAG |
| Transcript | >Pro_DTO377G3_2|g8040.t1 ATGTCGGGCATCATCAACCCACACCCAAGCCCAAGTGAAGAATACGCAGAATACCCTCTCCCAATCATTGACAAT CCCGGTGATCGTCATAGCCTCGAGCGTGAAGCCACCGTCGATGTCAACCAATACAATGCCGGGATCGAGCCACCC ACACGCCGTGGGAGCCGATCCCATCATAGGGTTCGCTTTCGCTCGATGAGTCTTCGCCGAAACGAAAATGACTCC GATCCCCTGTCACGACCGTTACTGCCGCAGTCAGATCTCAACGAAATCCCGCTATCCGGAACCATCACACCGCCA GCCCCGGCCCATTCCCGGCGCGGCTCCAATGTGCATATGCCCGAGTTTGATGAAACCGAGAAACATGATTTCACA GGTAAAATGGACCGGGCGACCTCGGCCCGCGACCGGTTCAGAGCGACCGGTCATCTGTTGCGACAGAAAACTAGC CGCTTGACGGAACGCCTCGGTCGCCCCACGGATGAGGGCGAGCCGCTCAATGCCTCTTACAACCCAGACGACTTC GACAGCGGTATTCCACTCGAGGAGCTGCAGGCCCGCCGCGCCCGCCATGAGGCCGACCGAGCGCACGCATTGGAG AGTGGTGAGAATTTTATCGAGCCGCCCCCTAGCGCCGAGGCTCATCGCTTGGTGCGCAGCATGACCGCGGTTCAG GATCAGCTACGGAAGCGCAAACCTCGGGGCGCATATCAGCGGTCGGGACAGACAACTCCCGAGGGCTTGATCAGC GCCTTTACGCAGCGGAGACGGTCTAGTGGAGTCGGCGGCGGCATTCTGTCGCAGTTGCTCAAGCTTCAGGTCGCC CAGAGCGGGAGCTCTTCGCGCCCGGAAAGTGTCATCACCGATGACTCCGACAGTGACACTCAGGTGTCTTCCAGT ATCTCCACCCCGAAGAAGGGTTACATCTCGCCCCTTATCCCTGCGTCTCAGCCAGCCTCTGGTGCCGCCACCCCA CGCAAGGAAAAGCTCAAATGGTACAAGAAGTCAGCCCATCGGTCCACCTCGTCGTTGGTCAATGCCTCCATGAAC CTCAGCACGGCGAGCCTGCCTGCCGCGGTTGAGGCCGCTCCCGGTATGCAAAAGAAACGGGGGAAGAGCAAGCGC AAGACCCGTCTAGAAGATGAGATCCGTGTTACCGTCCATATCGCAGAAATCATCGCACGTCAGCGGTATATCATG CAGCTGTGCCGTGCGCTTATGCGATACGGTGCGCCGACCCATCGTCTGGAGGAGTATATGCAAATGACCGCCAGG GTCCTGGAAGTTTCGGGCCAATTCTTATATCTGCCCGGTTGCATGATCATGTCCTTTGATGATCCTACTACACGC ACGGCCGAAGTCAAGCTTGTACGGATGGTGCAAGGAGTCGACCTTGGTCGCCTTGCTGATACACACAACGTTTAC AAGAATGTCGTTCACGATCTTATCGGCGTCGAAGAGGCAACTCAGGAACTAGACGAGATTATGCAGCGCAAGCCC AGATTCAGTAAATGGATCTTGGTCCTGGTTTACGGTTTTGCTAGTGCAGCGGTCGGCCCGTTCGCTTTCAAAGCG CGACCGATCGATATGCCCATCATCTTCTGTCTCGGTTGCATTGTTGGACTGATGCAGCACGTTCTCGCCCCACGG TCAACTCTCTACTCCAACGTCTTTGAGGTTACTGCTGCTATTCTGACTTCCTTCCTCGCCCGCGCATTTGGCAGC ATCATGGTTACCCGCAATGGTAAATCCGAACCACTTTTCTGCTTCTCCGCTATGGCACAGTCATCTATCGCTCTG ATTCTCCCTGGATTCATGGTCCTTTGTAGCAGTCTGGAGCTGCAATCTCACCAGATCATCGCTGGTTCGATCCGT ATGGTGTATTCCATTATCTACTCCCTCTTTTTGGGCTACGGTATTACAGTGGGGACTACGATCTACGGGCTAATG GATGGCAATGCGACATCTGCATCTACGTGTTCAGGCCTGGATGTCTATGGGTCGGTTTATGCACGCACATTCCCC TTCGTGGCTGTCTACGCTATTTTCCTAGCCATTGTGAACCATGGAAAATTAAAGCAGATGCCCGTCATGGTTTTC ATCGCTTTGTCCGGGTACGTCGCCAACTATTTCAGCACGACCAAACTCGGCGCCCAATCGGAAGTCGCCAACACC GTCGGTGCATTCACTATTGGTGTGCTAGGCAATCTGTACAGTCGGCTCTGGCATGGCCATGCCGCCACCGCCATT CTTCCTGGTATATTTGTGCTGGTCCCCTCTGGCCTTGCTTCTAGTGGCTCTCTGATTGCGGGCATCAAATACGCC GACGAGGTTCGTCAGAACCTTGAAAATAATGGGACTAGTTCATATTCCAGCTCTCTCTCTGAAACTTCAGTTGCC AGTCTTGGTTTCGGCATGATCCAAGTCGCGATCGGTATCACAGTCGGGCTGTTTATCGCGGCTTTGGTTGTCTAC CCCTACGGCAAAAAGCGCACCGGTCTGTTCAGCTTCTAG |
| Gene | >Pro_DTO377G3_2|g8040.t1 ATGTCGGGCATCATCAACCCACACCCAAGCCCAAGTGAAGAATACGCAGAATACCCTCTCCCAATCATTGACAAT CCCGGTGATCGTCATAGCCTCGAGCGTGAAGCCACCGTCGATGTCAACCAATACAATGCCGGGATCGAGCCACCC ACACGCCGTGGGAGCCGATCCCATCATAGGGTTCGCTTTCGCTCGATGAGTCTTCGCCGAAACGAAAATGACTCC GATCCCCTGTCACGACCGTTACTGCCGCAGTCAGATCTCAACGAAATCCCGCTATCCGGAACCATCACACCGCCA GCCCCGGCCCATTCCCGGCGCGGCTCCAATGTGCATATGCCCGAGTTTGATGAAACCGAGAAACATGATTTCACA GGTAAAATGGACCGGGCGACCTCGGCCCGCGACCGGTTCAGAGCGACCGGTCATCTGTTGCGACAGAAAACTAGC CGCTTGACGGAACGCCTCGGTCGCCCCACGGATGAGGGCGAGCCGCTCAATGCCTCTTACAACCCAGACGACTTC GACAGCGGTATTCCACTCGAGGAGCTGCAGGCCCGCCGCGCCCGCCATGAGGCCGACCGAGCGCACGCATTGGAG AGTGGTGAGAATTTTATCGAGCCGCCCCCTAGCGCCGAGGCTCATCGCTTGGTGCGCAGCATGACCGCGGTTCAG GATCAGCTACGGAAGCGCAAACCTCGGGGCGCATATCAGCGGTCGGGACAGACAACTCCCGAGGGCTTGATCAGC GCCTTTACGCAGCGGAGACGGTCTAGTGGAGTCGGCGGCGGCATTCTGTCGCAGTTGCTCAAGCTTCAGGTCGCC CAGAGCGGGAGCTCTTCGCGCCCGGAAAGTGTCATCACCGATGACTCCGACAGTGACACTCAGGTGTCTTCCAGT ATCTCCACCCCGAAGAAGGGTTACATCTCGCCCCTTATCCCTGCGTCTCAGCCAGCCTCTGGTGCCGCCACCCCA CGCAAGGAAAAGCTCAAATGGTACAAGAAGTCAGCCCATCGGTCCACCTCGTCGTTGGTCAATGCCTCCATGAAC CTCAGCACGGCGAGCCTGCCTGCCGCGGTTGAGGCCGCTCCCGGTATGCAAAAGAAACGGGGGAAGAGCAAGCGC AAGACCCGTCTAGAAGATGAGATCCGTGTTACCGTCCATATCGCAGAAATCATCGCACGTCAGCGGTATATCATG CAGCTGTGCCGTGCGCTTATGCGATACGGTGCGCCGACCCATCGTCTGGAGGAGTATATGCAAATGACCGCCAGG GTCCTGGAAGTTTCGGGCCAATTCTTATATCTGCCCGGTTGCATGATCATGTCCTTTGATGATCCTACTACACGC ACGGCCGAAGTCAAGCTTGTACGGATGGTGCAAGGAGTCGACCTTGGTCGCCTTGCTGATACACACAACGTTTAC AAGAATGTCGTTCACGATCTTATCGGCGTCGAAGAGGCAACTCAGGAACTAGACGAGATTATGCAGCGCAAGCCC AGATTCAGTAAATGGATCTTGGTCCTGGTTTACGGTTTTGCTAGTGCAGCGGTCGGCCCGTTCGCTTTCAAAGCG CGACCGATCGATATGCCCATCATCTTCTGTCTCGGTTGCATTGTTGGACTGATGCAGCACGTTCTCGCCCCACGG TCAACTCTCTACTCCAACGTCTTTGAGGTTACTGCTGCTATTCTGACTTCCTTCCTCGCCCGCGCATTTGGCAGC ATCATGGTTACCCGCAATGGTAAATCCGAACCACTTTTCTGCTTCTCCGCTATGGCACAGTCATCTATCGCTCTG ATTCTCCCTGGATTCATGGTCCTTTGTAGCAGTCTGGAGCTGCAATCTCACCAGATCATCGCTGGTTCGATCCGT ATGGTGTATTCCATTATCTACTCCCTCTTTTTGGGCTACGGTATTACAGTGGGGACTACGATCTACGGGCTAATG GATGGCAATGCGACATCTGCATCTACGTGTTCAGGCCTGGATGTCTATGGGTCGGTTTATGCACGCACATTCCCC TTCGTGGCTGTCTACGCTATTTTCCTAGCCATTGTGAACCATGGAAAATTAAAGCAGATGCCCGTCATGGTTTTC ATCGCTTTGTCCGGGTACGTCGCCAACTATTTCAGCACGACCAAACTCGGCGCCCAATCGGAAGTCGCCAACACC GTCGGTGCATTCACTATTGGTGTGCTAGGCAATCTGTACAGTCGGCTCTGGCATGGCCATGCCGCCACCGCCATT CTTCCTGGTATATTTGTGCTGGTCCCCTCTGGCCTTGCTTCTAGTGGCTCTCTGATTGCGGGCATCAAATACGCC GACGAGGTTCGTCAGAACCTTGAAAATAATGGGACTAGTTCATATTCCAGCTCTCTCTCTGAAACTTCAGTTGCC AGTCTTGGTTTCGGCATGATCCAAGTCGCGATCGGTATCACAGTCGGGCTGTTTATCGCGGCTTTGGTTGTCTAC CCCTACGGCAAAAAGCGCACCGGTCTGTTCAGCTTCTAG |