© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7996.t1 |
| Gene name | |
| Location | scaffold_28:77835..78651 |
| Strand | + |
| Gene length (bp) | 816 |
| Transcript length (bp) | 816 |
| Coding sequence length (bp) | 816 |
| Protein length (aa) | 272 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 3.0E-62 | 11 | 269 |
| PF00106 | adh_short | short chain dehydrogenase | 9.0E-49 | 6 | 216 |
| PF08659 | KR | KR domain | 3.3E-12 | 5 | 182 |
| PF02719 | Polysacc_synt_2 | Polysaccharide biosynthesis protein | 1.4E-06 | 8 | 138 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 185.40 | 113.71 | 257.09 |
| 5d_25C | Five days - 25 degrees Celsius | 299.15 | 180.35 | 417.94 |
| 7d_25C | Seven days - 25 degrees Celsius | 278.06 | 165.96 | 390.16 |
| 10d_25C | Ten days - 25 degrees Celsius | 389.71 | 233.87 | 545.55 |
| 7d_15C | Seven days - 15 degrees Celsius | 454.29 | 254.27 | 654.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 246.04 | 145.66 | 346.42 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.018838 | yes |
| 3d_25C | 7d_25C | 0.052372 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.214422 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.814725 | no |
| 5d_25C | 7d_15C | 0.064965 | no |
| 5d_25C | 7d_30C | 0.446827 | no |
| 5d_25C | 10d_25C | 0.256751 | no |
| 7d_25C | 7d_15C | 0.029770 | yes |
| 7d_25C | 7d_30C | 0.670500 | no |
| 7d_25C | 10d_25C | 0.132659 | no |
| 7d_15C | 7d_30C | 0.004450 | yes |
| 7d_15C | 10d_25C | 0.596855 | no |
| 7d_30C | 10d_25C | 0.029092 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7996.t1 MDVSGIALITGAASGIGRACAKTFARDGASGIALLDIGPEALEAVKAEIEEQQRGLGLKPCRVITYPTNVTDENR VNHVVQEVATTFGRLDYVVNAAGIAMKHAGGAAFCETSDWERILNVNLTGTFFVLRAAAKIMLKQEPIRSSIDGR PLQRGSIVNFSSIQGVAGIALSTAYTATKHAVIGLTRTASEDYAKDGLRINAICPGYTETPLTTKSPQIFAAMQE KVANAVPMERMGRPEEIADGVVYLSGGRASFVTGTALFVDGGYTQR* |
| Coding | >Pro_DTO377G3_2|g7996.t1 ATGGATGTATCTGGAATTGCCCTTATCACAGGTGCAGCCTCGGGCATTGGCCGCGCCTGTGCAAAGACATTCGCC AGAGATGGAGCCTCGGGAATCGCCCTACTCGACATCGGCCCTGAAGCCCTGGAGGCTGTGAAAGCCGAGATCGAA GAACAACAGCGCGGACTAGGATTAAAGCCATGCCGGGTCATCACCTACCCCACCAATGTAACAGATGAGAACCGC GTCAACCATGTCGTCCAAGAAGTCGCGACGACATTCGGCCGACTCGACTACGTCGTCAATGCAGCCGGAATCGCA ATGAAGCACGCAGGCGGAGCTGCATTCTGCGAGACATCGGATTGGGAGCGTATCTTGAACGTCAACCTCACGGGT ACATTCTTCGTTTTGCGAGCTGCTGCCAAGATCATGTTGAAGCAGGAGCCTATCCGGTCTTCGATTGATGGCAGG CCACTGCAGCGGGGCTCAATTGTCAACTTCTCGTCTATTCAGGGCGTCGCTGGGATTGCGTTGTCGACTGCGTAC ACTGCGACGAAGCATGCGGTTATTGGTTTGACGAGGACTGCCTCGGAGGATTATGCAAAGGATGGGTTGCGCATC AACGCTATCTGTCCTGGGTATACCGAGACCCCGTTGACGACCAAGTCGCCCCAGATCTTCGCGGCTATGCAGGAG AAAGTTGCTAATGCGGTTCCAATGGAGCGTATGGGTCGGCCGGAGGAGATCGCCGACGGTGTTGTTTACTTGAGT GGTGGACGGGCTTCTTTTGTTACTGGGACGGCTTTATTCGTGGATGGTGGGTACACGCAGCGATGA |
| Transcript | >Pro_DTO377G3_2|g7996.t1 ATGGATGTATCTGGAATTGCCCTTATCACAGGTGCAGCCTCGGGCATTGGCCGCGCCTGTGCAAAGACATTCGCC AGAGATGGAGCCTCGGGAATCGCCCTACTCGACATCGGCCCTGAAGCCCTGGAGGCTGTGAAAGCCGAGATCGAA GAACAACAGCGCGGACTAGGATTAAAGCCATGCCGGGTCATCACCTACCCCACCAATGTAACAGATGAGAACCGC GTCAACCATGTCGTCCAAGAAGTCGCGACGACATTCGGCCGACTCGACTACGTCGTCAATGCAGCCGGAATCGCA ATGAAGCACGCAGGCGGAGCTGCATTCTGCGAGACATCGGATTGGGAGCGTATCTTGAACGTCAACCTCACGGGT ACATTCTTCGTTTTGCGAGCTGCTGCCAAGATCATGTTGAAGCAGGAGCCTATCCGGTCTTCGATTGATGGCAGG CCACTGCAGCGGGGCTCAATTGTCAACTTCTCGTCTATTCAGGGCGTCGCTGGGATTGCGTTGTCGACTGCGTAC ACTGCGACGAAGCATGCGGTTATTGGTTTGACGAGGACTGCCTCGGAGGATTATGCAAAGGATGGGTTGCGCATC AACGCTATCTGTCCTGGGTATACCGAGACCCCGTTGACGACCAAGTCGCCCCAGATCTTCGCGGCTATGCAGGAG AAAGTTGCTAATGCGGTTCCAATGGAGCGTATGGGTCGGCCGGAGGAGATCGCCGACGGTGTTGTTTACTTGAGT GGTGGACGGGCTTCTTTTGTTACTGGGACGGCTTTATTCGTGGATGGTGGGTACACGCAGCGATGA |
| Gene | >Pro_DTO377G3_2|g7996.t1 ATGGATGTATCTGGAATTGCCCTTATCACAGGTGCAGCCTCGGGCATTGGCCGCGCCTGTGCAAAGACATTCGCC AGAGATGGAGCCTCGGGAATCGCCCTACTCGACATCGGCCCTGAAGCCCTGGAGGCTGTGAAAGCCGAGATCGAA GAACAACAGCGCGGACTAGGATTAAAGCCATGCCGGGTCATCACCTACCCCACCAATGTAACAGATGAGAACCGC GTCAACCATGTCGTCCAAGAAGTCGCGACGACATTCGGCCGACTCGACTACGTCGTCAATGCAGCCGGAATCGCA ATGAAGCACGCAGGCGGAGCTGCATTCTGCGAGACATCGGATTGGGAGCGTATCTTGAACGTCAACCTCACGGGT ACATTCTTCGTTTTGCGAGCTGCTGCCAAGATCATGTTGAAGCAGGAGCCTATCCGGTCTTCGATTGATGGCAGG CCACTGCAGCGGGGCTCAATTGTCAACTTCTCGTCTATTCAGGGCGTCGCTGGGATTGCGTTGTCGACTGCGTAC ACTGCGACGAAGCATGCGGTTATTGGTTTGACGAGGACTGCCTCGGAGGATTATGCAAAGGATGGGTTGCGCATC AACGCTATCTGTCCTGGGTATACCGAGACCCCGTTGACGACCAAGTCGCCCCAGATCTTCGCGGCTATGCAGGAG AAAGTTGCTAATGCGGTTCCAATGGAGCGTATGGGTCGGCCGGAGGAGATCGCCGACGGTGTTGTTTACTTGAGT GGTGGACGGGCTTCTTTTGTTACTGGGACGGCTTTATTCGTGGATGGTGGGTACACGCAGCGATGA |