Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7990.t1
Gene name
Locationscaffold_28:63795..65584
Strand-
Gene length (bp)1789
Transcript length (bp)1470
Coding sequence length (bp)1470
Protein length (aa) 490

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28 3.1E-30 136 397
PF12708 Pectate_lyase_3 Pectate lyase superfamily protein 7.5E-07 37 273

GO

GO Term Description Terminal node
GO:0004650 polygalacturonase activity Yes
GO:0005975 carbohydrate metabolic process Yes
GO:0016798 hydrolase activity, acting on glycosyl bonds No
GO:0008150 biological_process No
GO:0044238 primary metabolic process No
GO:0008152 metabolic process No
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds No
GO:0003674 molecular_function No
GO:0003824 catalytic activity No
GO:0016787 hydrolase activity No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.03 0.0 0.12
5d_25C Five days - 25 degrees Celsius 0.00 0.0 0.00
7d_25C Seven days - 25 degrees Celsius 0.00 0.0 0.00
10d_25C Ten days - 25 degrees Celsius 0.02 0.0 0.12
7d_15C Seven days - 15 degrees Celsius 0.00 0.0 0.00
7d_30C Seven days - 30 degrees Celsius 0.00 0.0 0.00

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.0 no
3d_25C 7d_25C 1.0 no
3d_25C 7d_15C 1.0 no
3d_25C 7d_30C 1.0 no
3d_25C 10d_25C 1.0 no
5d_25C 7d_25C 1.0 no
5d_25C 7d_15C 1.0 no
5d_25C 7d_30C 1.0 no
5d_25C 10d_25C 1.0 no
7d_25C 7d_15C 1.0 no
7d_25C 7d_30C 1.0 no
7d_25C 10d_25C 1.0 no
7d_15C 7d_30C 1.0 no
7d_15C 10d_25C 1.0 no
7d_30C 10d_25C 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7990.t1
MKFTSLLLLPLLRITVGQLIGPVGPTTDLYDKTVECNILDYGAVADNKTDISTALETVFSECVRKHPGSRLIVPE
GEYLIERGVTLSNGTNWAFQLDGLITAAYGGDWNIARELILQGFAGTEIINATINGEGDSKFLLDVLVIVNAVDF
EFYSSNGKGAFQGQGYLYRNLNNTDRPRLVRLISPTNASVHDLILVDSPKFHIILDFAVNVEAYHLTIRGGNLGS
YDGIDAIGTNYWIHDNEVTNRDECVSVKSPSHHALVENLVCNQAGSGISIGSLNVSAEISNIEARNISIIQGNNI
AFIKTYPGGSGYVTNITFSNFRSLGSLYGLDINQYWQNTFEPDTGAVTLSNLVFRNFSGSVADGVKRPPLYLIAN
DLTYATNVTVEDFTVWTEQGTSVVNKISNIFGNGDDSYGSNNGIKSLGEGESPSPYTSTYTITASPTDWQAPTTP
TWAVPSTGYGTASPIPVYTPAPLWRPGGVDYDLHYWGSF*
Coding >Pro_DTO377G3_2|g7990.t1
ATGAAATTCACCAGTTTGCTTCTGCTACCCTTGTTGCGTATCACCGTTGGCCAACTCATCGGCCCCGTGGGTCCA
ACAACCGACCTTTATGATAAGACAGTCGAATGCAACATCCTTGATTATGGCGCTGTAGCTGATAACAAGACCGAC
ATATCCACTGCACTAGAGACAGTTTTCTCGGAATGTGTTCGCAAACATCCGGGTAGCCGATTAATTGTACCCGAA
GGAGAGTATTTGATCGAGCGAGGTGTGACTCTCAGCAATGGCACAAATTGGGCATTCCAGTTGGATGGTCTGATC
ACAGCTGCATATGGCGGCGACTGGAATATCGCGCGTGAGTTGATACTCCAAGGGTTTGCAGGCACAGAGATTATC
AATGCAACCATCAACGGGGAGGGTGATTCTAAATTTTTATTAGATGTGCTCGTCATTGTCAATGCTGTGGATTTC
GAGTTCTATTCTTCCAATGGCAAAGGTGCCTTTCAAGGACAGGGTTATCTCTACCGAAATCTCAACAACACGGAT
CGCCCGCGCTTGGTGCGTTTGATCTCTCCGACCAACGCCTCAGTGCATGACTTGATTCTAGTCGACAGCCCCAAG
TTTCACATTATCTTGGATTTTGCCGTGAATGTTGAAGCCTACCATTTAACCATCCGGGGAGGAAACCTGGGCAGT
TATGATGGAATTGATGCCATTGGAACAAACTATTGGATTCACGACAATGAGGTTACCAATCGGGACGAATGTGTT
TCCGTGAAAAGTCCTTCTCATCATGCTTTGGTTGAGAACCTGGTGTGCAATCAAGCAGGCTCTGGTATATCCATT
GGCAGTCTGAATGTATCTGCTGAAATATCCAACATCGAAGCACGCAATATCAGCATTATCCAAGGCAACAACATA
GCCTTCATCAAAACATATCCTGGTGGATCCGGCTACGTTACAAACATCACTTTTTCGAATTTCCGCTCTCTGGGG
AGTCTTTATGGCTTGGATATCAACCAATACTGGCAGAATACGTTTGAGCCCGACACCGGTGCTGTTACATTGAGT
AACCTGGTTTTCCGGAATTTCTCTGGCTCTGTTGCCGATGGAGTGAAGCGTCCTCCACTTTACCTCATCGCGAAT
GATCTCACATACGCTACTAATGTCACTGTCGAAGATTTCACCGTGTGGACAGAACAGGGTACTTCGGTTGTGAAC
AAGATCAGCAATATCTTTGGCAATGGGGATGATAGCTACGGGTCAAATAATGGTATCAAGTCTCTCGGTGAAGGA
GAATCGCCCTCACCTTATACCAGCACCTACACCATTACAGCATCTCCAACTGACTGGCAGGCCCCCACAACTCCT
ACGTGGGCTGTTCCTAGTACGGGTTATGGAACGGCATCTCCTATTCCGGTCTATACTCCAGCTCCTCTGTGGCGC
CCAGGTGGTGTGGATTATGATTTGCATTACTGGGGAAGCTTCTAG
Transcript >Pro_DTO377G3_2|g7990.t1
ATGAAATTCACCAGTTTGCTTCTGCTACCCTTGTTGCGTATCACCGTTGGCCAACTCATCGGCCCCGTGGGTCCA
ACAACCGACCTTTATGATAAGACAGTCGAATGCAACATCCTTGATTATGGCGCTGTAGCTGATAACAAGACCGAC
ATATCCACTGCACTAGAGACAGTTTTCTCGGAATGTGTTCGCAAACATCCGGGTAGCCGATTAATTGTACCCGAA
GGAGAGTATTTGATCGAGCGAGGTGTGACTCTCAGCAATGGCACAAATTGGGCATTCCAGTTGGATGGTCTGATC
ACAGCTGCATATGGCGGCGACTGGAATATCGCGCGTGAGTTGATACTCCAAGGGTTTGCAGGCACAGAGATTATC
AATGCAACCATCAACGGGGAGGGTGATTCTAAATTTTTATTAGATGTGCTCGTCATTGTCAATGCTGTGGATTTC
GAGTTCTATTCTTCCAATGGCAAAGGTGCCTTTCAAGGACAGGGTTATCTCTACCGAAATCTCAACAACACGGAT
CGCCCGCGCTTGGTGCGTTTGATCTCTCCGACCAACGCCTCAGTGCATGACTTGATTCTAGTCGACAGCCCCAAG
TTTCACATTATCTTGGATTTTGCCGTGAATGTTGAAGCCTACCATTTAACCATCCGGGGAGGAAACCTGGGCAGT
TATGATGGAATTGATGCCATTGGAACAAACTATTGGATTCACGACAATGAGGTTACCAATCGGGACGAATGTGTT
TCCGTGAAAAGTCCTTCTCATCATGCTTTGGTTGAGAACCTGGTGTGCAATCAAGCAGGCTCTGGTATATCCATT
GGCAGTCTGAATGTATCTGCTGAAATATCCAACATCGAAGCACGCAATATCAGCATTATCCAAGGCAACAACATA
GCCTTCATCAAAACATATCCTGGTGGATCCGGCTACGTTACAAACATCACTTTTTCGAATTTCCGCTCTCTGGGG
AGTCTTTATGGCTTGGATATCAACCAATACTGGCAGAATACGTTTGAGCCCGACACCGGTGCTGTTACATTGAGT
AACCTGGTTTTCCGGAATTTCTCTGGCTCTGTTGCCGATGGAGTGAAGCGTCCTCCACTTTACCTCATCGCGAAT
GATCTCACATACGCTACTAATGTCACTGTCGAAGATTTCACCGTGTGGACAGAACAGGGTACTTCGGTTGTGAAC
AAGATCAGCAATATCTTTGGCAATGGGGATGATAGCTACGGGTCAAATAATGGTATCAAGTCTCTCGGTGAAGGA
GAATCGCCCTCACCTTATACCAGCACCTACACCATTACAGCATCTCCAACTGACTGGCAGGCCCCCACAACTCCT
ACGTGGGCTGTTCCTAGTACGGGTTATGGAACGGCATCTCCTATTCCGGTCTATACTCCAGCTCCTCTGTGGCGC
CCAGGTGGTGTGGATTATGATTTGCATTACTGGGGAAGCTTCTAG
Gene >Pro_DTO377G3_2|g7990.t1
ATGAAATTCACCAGTTTGCTTCTGCTACCCTTGTTGCGTATCACCGTTGGCCAACTCATCGGCCCCGTGGGTCCA
ACAACCGACCTTTATGATAAGACAGTCGAATGCAACATCCTTGATTATGGCGCTGTAGCTGATAACAAGACCGAC
ATATCCACTGCACTAGAGACAGTTTTCTCGGAATGTGTTCGCAAACATCCGGGTAGCCGATTAATTGTACCCGAA
GGAGAGTATTTGATCGAGCGAGGTGTGACTCTCAGCAATGGCACAAATTGGGCATTCCAGTTGGATGGTCTGATC
ACAGCTGCATATGGCGGCGACTGGAATATCGCGCGTGAGTTGATACTCCAAGGGTTTGCAGGCACAGAGATTATC
AATGCAACCATCAACGGGGAGGGTGATTCTAAATTTTTATTAGATGTGCTCGTCATTGTCAATGGTGAGTTCACA
TCTCCAGACATCTTTGGAGCCCAATGTTGACAAAACAGCTGTGGATTTCGAGTTCTATTCTTCCAATGGCAAAGG
TGCCTTTCAAGGACAGGGTTATCTCTACCGAAATCTCAACAAGTAAGTTATAGACCATTTTATGAGATGTTGTGA
AGCTTATACATAAATTCCAGCACGGATCGCCCGCGCTTGGTGCGTTTGATCTCTCCGACCAACGCCTCAGTGCAT
GACTTGATTCTAGTCGACAGCCCCAAGTTTCACATTATCTTGGATTTTGCCGTGAATGTTGAAGCCTACCATTTA
ACCATCCGGGGAGGAAACCTGGGCAGTTATGATGGAATTGATGCCATTGGAACAAACTATTGGATTCACGACAAT
GAGGTATGCGTCTCAACCCCTGGTCTTCATCTTTCACCTGAACTAATGATCATTCTAGGTTACCAATCGGGACGA
ATGTGTTTCCGTGAAAAGTCCTTCTCATCATGCTTTGGTTGAGAACCTGGTGTGCAATCAAGCAGGCTCTGGTAT
ATCCATTGGCAGTCTGAATGTATCTGCTGAAATATCCAACATCGTCAGTTTCAACCTGTCGATATCCCATCAAAT
GCTAATATTGCAGTAGGAAGCACGCAATATCAGCATTATCCAAGGCAACAACATAGCCTTCATCAAAACATATCC
TGGTGGATCCGGCTACGTTACAAACATCACTTTTTCGAATTTCCGCTCTCTGGGGAGTCTTTATGGCTTGGATAT
CAACCAATACTGGCAGAATACGTTTGAGCCCGACACCGGTGCTGTTACATTGAGTAACCTGGTTTTCCGGAATTT
CTCTGGTAAGTCATTGACAAATGTTAGTTCTGGCAGTATTCTTACAAAGTTTGTCAGGCTCTGTTGCCGATGGAG
TGAAGCGTCCTCCACTTTACCTCATCGCGAATGATCTCACATACGCTACTAATGTCACTGTCGAAGATTTCACCG
TGTGGACAGAACAGGGTACTTCGGTTGTGAACAAGATCAGCAATATCTTTGGCAATGGGGATGATAGCTACGGGT
CAAATAATGGTATCAAGTCTCTCGGTGAAGGAGAATCGCCCTCACCTTATACCAGCACCTACACCATTACAGCAT
CTCCAACTGACTGGCAGGCCCCCACAACTCCTACGTGGGCTGTTCCTAGTACGGGTTATGGAAGTAAGCTCTCTC
TCGGCTTCTTTTGTGTTTCTTGTCCTACCAGATAACTAATTTCTCTACAGCGGCATCTCCTATTCCGGTCTATAC
TCCAGCTCCTCTGTGGCGCCCAGGTGGTGTGGATTATGATTTGCATTACTGGGGAAGCTTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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