Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7980.t1
Gene name
Locationscaffold_28:37687..38618
Strand+
Gene length (bp)931
Transcript length (bp)879
Coding sequence length (bp)879
Protein length (aa) 293

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14327 CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2 4.2E-31 122 201
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.9E-19 10 80
PF14304 CSTF_C Transcription termination and cleavage factor C-terminal 9.9E-19 249 289

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0031124 mRNA 3'-end processing Yes
GO:0008152 metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0008150 biological_process No
GO:0006396 RNA processing No
GO:0006725 cellular aromatic compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0016071 mRNA metabolic process No
GO:0003676 nucleic acid binding No
GO:0044238 primary metabolic process No
GO:0005488 binding No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0003674 molecular_function No
GO:0031123 RNA 3'-end processing No
GO:0006807 nitrogen compound metabolic process No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0006397 mRNA processing No
GO:0090304 nucleic acid metabolic process No
GO:0044237 cellular metabolic process No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 42.12 21.64 62.60
5d_25C Five days - 25 degrees Celsius 39.05 19.72 58.38
7d_25C Seven days - 25 degrees Celsius 36.49 18.14 54.83
10d_25C Ten days - 25 degrees Celsius 39.38 19.60 59.17
7d_15C Seven days - 15 degrees Celsius 39.41 19.89 58.92
7d_30C Seven days - 30 degrees Celsius 37.55 18.81 56.29

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.847893 no
3d_25C 7d_25C 0.690337 no
3d_25C 7d_15C 0.868909 no
3d_25C 7d_30C 0.762748 no
3d_25C 10d_25C 0.871092 no
5d_25C 7d_25C 0.865361 no
5d_25C 7d_15C 0.984842 no
5d_25C 7d_30C 0.927572 no
5d_25C 10d_25C 0.986009 no
7d_25C 7d_15C 0.847817 no
7d_25C 7d_30C 0.947844 no
7d_25C 10d_25C 0.852681 no
7d_15C 7d_30C 0.908006 no
7d_15C 10d_25C 0.998850 no
7d_30C 10d_25C 0.915015 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7980.t1
MAPDRTGKSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVRNLNDHEVM
GRKIRVDWPHNNEKDSVPPDYSQQSQPMMNQDTTQQQQITGSAPLPPLPPGVELPPQIDCPNAISHTLASLPPNQ
LLDVLTQMKSLAVADPARATELLRQAPQLAYAVFQALLLMNLVEYQLLGSIVEQAAQPPQVAQQPTPQQFQQYGV
PGQISTPPVTGTPFAPPPIQPAAPMHGQEELLQQVLSMPQAAIDALPPMERSQIMLLRQQLMQGGMR*
Coding >Pro_DTO377G3_2|g7980.t1
ATGGCGCCCGATCGGACTGGGAAGAGCGTGTTCCTGGGGAATATTCCCTACAACCTCACCGAGGAACAAGTCAAA
GACATCCTCAGCACGGCCGGTACCGTTACAAAGTTCCGGTTGATGATGAATCCTGAGACCGGCAAACCCAAAGGA
TATGGATTCGCAGATTTTGCAGACGCCGACGCCGCTGCCTCGGCGGTGCGCAACCTCAACGATCACGAAGTCATG
GGCCGCAAGATCCGTGTTGATTGGCCTCACAACAACGAGAAAGATTCCGTACCCCCAGATTACTCGCAGCAGTCG
CAACCAATGATGAACCAAGATACCACGCAGCAGCAACAAATCACAGGCTCAGCGCCACTGCCTCCTTTACCCCCA
GGCGTGGAACTCCCGCCTCAGATCGACTGCCCCAACGCCATCTCCCATACTCTCGCATCCCTCCCACCAAATCAA
TTGCTCGATGTCTTGACACAAATGAAATCTCTTGCGGTTGCCGACCCAGCACGTGCCACTGAGCTGCTGCGCCAA
GCGCCTCAGCTCGCCTACGCCGTCTTCCAGGCTCTACTCCTCATGAATCTGGTCGAATACCAGCTGCTTGGTTCT
ATCGTCGAACAGGCCGCCCAGCCCCCCCAAGTGGCTCAACAGCCAACCCCTCAACAATTTCAACAGTATGGTGTT
CCTGGTCAGATCTCTACACCGCCTGTCACCGGCACTCCTTTCGCCCCTCCCCCGATTCAACCTGCCGCCCCGATG
CACGGCCAGGAGGAACTCCTTCAGCAAGTCCTCAGCATGCCCCAGGCTGCTATTGATGCTCTGCCTCCCATGGAA
AGAAGCCAGATCATGCTGCTACGCCAGCAATTGATGCAGGGTGGCATGCGGTAG
Transcript >Pro_DTO377G3_2|g7980.t1
ATGGCGCCCGATCGGACTGGGAAGAGCGTGTTCCTGGGGAATATTCCCTACAACCTCACCGAGGAACAAGTCAAA
GACATCCTCAGCACGGCCGGTACCGTTACAAAGTTCCGGTTGATGATGAATCCTGAGACCGGCAAACCCAAAGGA
TATGGATTCGCAGATTTTGCAGACGCCGACGCCGCTGCCTCGGCGGTGCGCAACCTCAACGATCACGAAGTCATG
GGCCGCAAGATCCGTGTTGATTGGCCTCACAACAACGAGAAAGATTCCGTACCCCCAGATTACTCGCAGCAGTCG
CAACCAATGATGAACCAAGATACCACGCAGCAGCAACAAATCACAGGCTCAGCGCCACTGCCTCCTTTACCCCCA
GGCGTGGAACTCCCGCCTCAGATCGACTGCCCCAACGCCATCTCCCATACTCTCGCATCCCTCCCACCAAATCAA
TTGCTCGATGTCTTGACACAAATGAAATCTCTTGCGGTTGCCGACCCAGCACGTGCCACTGAGCTGCTGCGCCAA
GCGCCTCAGCTCGCCTACGCCGTCTTCCAGGCTCTACTCCTCATGAATCTGGTCGAATACCAGCTGCTTGGTTCT
ATCGTCGAACAGGCCGCCCAGCCCCCCCAAGTGGCTCAACAGCCAACCCCTCAACAATTTCAACAGTATGGTGTT
CCTGGTCAGATCTCTACACCGCCTGTCACCGGCACTCCTTTCGCCCCTCCCCCGATTCAACCTGCCGCCCCGATG
CACGGCCAGGAGGAACTCCTTCAGCAAGTCCTCAGCATGCCCCAGGCTGCTATTGATGCTCTGCCTCCCATGGAA
AGAAGCCAGATCATGCTGCTACGCCAGCAATTGATGCAGGGTGGCATGCGGTAG
Gene >Pro_DTO377G3_2|g7980.t1
ATGGCGCCCGATCGGACTGGGAAGAGCGTGTTCCTGGGGAATATTCCCTACAGTATGTAACCGTAGCTGCATGTC
TAACCTGCGCGATACTGATCGTTCTCTAGACCTCACCGAGGAACAAGTCAAAGACATCCTCAGCACGGCCGGTAC
CGTTACAAAGTTCCGGTTGATGATGAATCCTGAGACCGGCAAACCCAAAGGATATGGATTCGCAGATTTTGCAGA
CGCCGACGCCGCTGCCTCGGCGGTGCGCAACCTCAACGATCACGAAGTCATGGGCCGCAAGATCCGTGTTGATTG
GCCTCACAACAACGAGAAAGATTCCGTACCCCCAGATTACTCGCAGCAGTCGCAACCAATGATGAACCAAGATAC
CACGCAGCAGCAACAAATCACAGGCTCAGCGCCACTGCCTCCTTTACCCCCAGGCGTGGAACTCCCGCCTCAGAT
CGACTGCCCCAACGCCATCTCCCATACTCTCGCATCCCTCCCACCAAATCAATTGCTCGATGTCTTGACACAAAT
GAAATCTCTTGCGGTTGCCGACCCAGCACGTGCCACTGAGCTGCTGCGCCAAGCGCCTCAGCTCGCCTACGCCGT
CTTCCAGGCTCTACTCCTCATGAATCTGGTCGAATACCAGCTGCTTGGTTCTATCGTCGAACAGGCCGCCCAGCC
CCCCCAAGTGGCTCAACAGCCAACCCCTCAACAATTTCAACAGTATGGTGTTCCTGGTCAGATCTCTACACCGCC
TGTCACCGGCACTCCTTTCGCCCCTCCCCCGATTCAACCTGCCGCCCCGATGCACGGCCAGGAGGAACTCCTTCA
GCAAGTCCTCAGCATGCCCCAGGCTGCTATTGATGCTCTGCCTCCCATGGAAAGAAGCCAGATCATGCTGCTACG
CCAGCAATTGATGCAGGGTGGCATGCGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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