Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7980.t1
Gene name
Locationscaffold_28:37687..38618
Strand+
Gene length (bp)931
Transcript length (bp)879
Coding sequence length (bp)879
Protein length (aa) 293

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14327 CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2 2.4E-31 122 201
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.7E-19 10 80
PF14304 CSTF_C Transcription termination and cleavage factor C-terminal 2.6E-17 250 289

GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0031124 mRNA 3'-end processing Yes
GO:0006396 RNA processing No
GO:0046483 heterocycle metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0071704 organic substance metabolic process No
GO:0016071 mRNA metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0009987 cellular process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0031123 RNA 3'-end processing No
GO:0006397 mRNA processing No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0003674 molecular_function No
GO:0006807 nitrogen compound metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0005488 binding No
GO:0016070 RNA metabolic process No
GO:0044237 cellular metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7980.t1
MAPDRTGKSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVRNLNDHEVM
GRKIRVDWPHNNEKDSVPPDYSQQSQPMMNQDTTQQQQITGSAPLPPLPPGVELPPQIDCPNAISHTLASLPPNQ
LLDVLTQMKSLAVADPARATELLRQAPQLAYAVFQALLLMNLVEYQLLGSIVEQAAQPPQVAQQPTPQQFQQYGV
PGQISTPPVTGTPFAPPPIQPAAPMHGQEELLQQVLSMPQAAIDALPPMERSQIMLLRQQLMQGGMR*
Coding >Pro_DTO377G3_2|g7980.t1
ATGGCGCCCGATCGGACTGGGAAGAGCGTGTTCCTGGGGAATATTCCCTACAACCTCACCGAGGAACAAGTCAAA
GACATCCTCAGCACGGCCGGTACCGTTACAAAGTTCCGGTTGATGATGAATCCTGAGACCGGCAAACCCAAAGGA
TATGGATTCGCAGATTTTGCAGACGCCGACGCCGCTGCCTCGGCGGTGCGCAACCTCAACGATCACGAAGTCATG
GGCCGCAAGATCCGTGTTGATTGGCCTCACAACAACGAGAAAGATTCCGTACCCCCAGATTACTCGCAGCAGTCG
CAACCAATGATGAACCAAGATACCACGCAGCAGCAACAAATCACAGGCTCAGCGCCACTGCCTCCTTTACCCCCA
GGCGTGGAACTCCCGCCTCAGATCGACTGCCCCAACGCCATCTCCCATACTCTCGCATCCCTCCCACCAAATCAA
TTGCTCGATGTCTTGACACAAATGAAATCTCTTGCGGTTGCCGACCCAGCACGTGCCACTGAGCTGCTGCGCCAA
GCGCCTCAGCTCGCCTACGCCGTCTTCCAGGCTCTACTCCTCATGAATCTGGTCGAATACCAGCTGCTTGGTTCT
ATCGTCGAACAGGCCGCCCAGCCCCCCCAAGTGGCTCAACAGCCAACCCCTCAACAATTTCAACAGTATGGTGTT
CCTGGTCAGATCTCTACACCGCCTGTCACCGGCACTCCTTTCGCCCCTCCCCCGATTCAACCTGCCGCCCCGATG
CACGGCCAGGAGGAACTCCTTCAGCAAGTCCTCAGCATGCCCCAGGCTGCTATTGATGCTCTGCCTCCCATGGAA
AGAAGCCAGATCATGCTGCTACGCCAGCAATTGATGCAGGGTGGCATGCGGTAG
Transcript >Pro_DTO377G3_2|g7980.t1
ATGGCGCCCGATCGGACTGGGAAGAGCGTGTTCCTGGGGAATATTCCCTACAACCTCACCGAGGAACAAGTCAAA
GACATCCTCAGCACGGCCGGTACCGTTACAAAGTTCCGGTTGATGATGAATCCTGAGACCGGCAAACCCAAAGGA
TATGGATTCGCAGATTTTGCAGACGCCGACGCCGCTGCCTCGGCGGTGCGCAACCTCAACGATCACGAAGTCATG
GGCCGCAAGATCCGTGTTGATTGGCCTCACAACAACGAGAAAGATTCCGTACCCCCAGATTACTCGCAGCAGTCG
CAACCAATGATGAACCAAGATACCACGCAGCAGCAACAAATCACAGGCTCAGCGCCACTGCCTCCTTTACCCCCA
GGCGTGGAACTCCCGCCTCAGATCGACTGCCCCAACGCCATCTCCCATACTCTCGCATCCCTCCCACCAAATCAA
TTGCTCGATGTCTTGACACAAATGAAATCTCTTGCGGTTGCCGACCCAGCACGTGCCACTGAGCTGCTGCGCCAA
GCGCCTCAGCTCGCCTACGCCGTCTTCCAGGCTCTACTCCTCATGAATCTGGTCGAATACCAGCTGCTTGGTTCT
ATCGTCGAACAGGCCGCCCAGCCCCCCCAAGTGGCTCAACAGCCAACCCCTCAACAATTTCAACAGTATGGTGTT
CCTGGTCAGATCTCTACACCGCCTGTCACCGGCACTCCTTTCGCCCCTCCCCCGATTCAACCTGCCGCCCCGATG
CACGGCCAGGAGGAACTCCTTCAGCAAGTCCTCAGCATGCCCCAGGCTGCTATTGATGCTCTGCCTCCCATGGAA
AGAAGCCAGATCATGCTGCTACGCCAGCAATTGATGCAGGGTGGCATGCGGTAG
Gene >Pro_DTO377G3_2|g7980.t1
ATGGCGCCCGATCGGACTGGGAAGAGCGTGTTCCTGGGGAATATTCCCTACAGTATGTAACCGTAGCTGCATGTC
TAACCTGCGCGATACTGATCGTTCTCTAGACCTCACCGAGGAACAAGTCAAAGACATCCTCAGCACGGCCGGTAC
CGTTACAAAGTTCCGGTTGATGATGAATCCTGAGACCGGCAAACCCAAAGGATATGGATTCGCAGATTTTGCAGA
CGCCGACGCCGCTGCCTCGGCGGTGCGCAACCTCAACGATCACGAAGTCATGGGCCGCAAGATCCGTGTTGATTG
GCCTCACAACAACGAGAAAGATTCCGTACCCCCAGATTACTCGCAGCAGTCGCAACCAATGATGAACCAAGATAC
CACGCAGCAGCAACAAATCACAGGCTCAGCGCCACTGCCTCCTTTACCCCCAGGCGTGGAACTCCCGCCTCAGAT
CGACTGCCCCAACGCCATCTCCCATACTCTCGCATCCCTCCCACCAAATCAATTGCTCGATGTCTTGACACAAAT
GAAATCTCTTGCGGTTGCCGACCCAGCACGTGCCACTGAGCTGCTGCGCCAAGCGCCTCAGCTCGCCTACGCCGT
CTTCCAGGCTCTACTCCTCATGAATCTGGTCGAATACCAGCTGCTTGGTTCTATCGTCGAACAGGCCGCCCAGCC
CCCCCAAGTGGCTCAACAGCCAACCCCTCAACAATTTCAACAGTATGGTGTTCCTGGTCAGATCTCTACACCGCC
TGTCACCGGCACTCCTTTCGCCCCTCCCCCGATTCAACCTGCCGCCCCGATGCACGGCCAGGAGGAACTCCTTCA
GCAAGTCCTCAGCATGCCCCAGGCTGCTATTGATGCTCTGCCTCCCATGGAAAGAAGCCAGATCATGCTGCTACG
CCAGCAATTGATGCAGGGTGGCATGCGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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