© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7962.t1 |
| Gene name | |
| Location | scaffold_27:270401..271481 |
| Strand | - |
| Gene length (bp) | 1080 |
| Transcript length (bp) | 1080 |
| Coding sequence length (bp) | 1080 |
| Protein length (aa) | 360 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00933 | Glyco_hydro_3 | Glycosyl hydrolase family 3 N terminal domain | 4.5E-59 | 43 | 352 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.96 | 1.59 | 10.33 |
| 5d_25C | Five days - 25 degrees Celsius | 2.92 | 0.53 | 5.30 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.70 | 0.47 | 4.93 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.52 | 0.02 | 3.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.87 | 0.10 | 3.63 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.22 | 0.66 | 5.78 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.094810 | no |
| 3d_25C | 7d_25C | 0.058988 | no |
| 3d_25C | 7d_15C | 0.016924 | yes |
| 3d_25C | 7d_30C | 0.161860 | no |
| 3d_25C | 10d_25C | 0.007437 | yes |
| 5d_25C | 7d_25C | 0.910728 | no |
| 5d_25C | 7d_15C | 0.425856 | no |
| 5d_25C | 7d_30C | 0.876511 | no |
| 5d_25C | 10d_25C | 0.224343 | no |
| 7d_25C | 7d_15C | 0.523239 | no |
| 7d_25C | 7d_30C | 0.767240 | no |
| 7d_25C | 10d_25C | 0.293174 | no |
| 7d_15C | 7d_30C | 0.305060 | no |
| 7d_15C | 10d_25C | 0.788413 | no |
| 7d_30C | 10d_25C | 0.156120 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7962.t1 MKFTQSLLPFFLALAPSALAASPTDLQAQIGSHVIYSYPGLEPSAQLLELIKEGKVGGIILFGENVSDNLTTTID NLQQTYKQSPYYSGSPLLVMTDQEGGEVRRLSGGPVSSAKVVGEAADYKAAATQMGIDAATTLKEFHNNANLAPV LDVFRVAGDFADNYQRSFSNSSSVVGTCGSAFIHAQQGDGVVATVKHFPGLGGASTTENTDVEPVTIDFTKEELR SVDMAPYTKAIAAGVDMVMASWAIYPALDANYPSGLSKAIIQNELRGRLGFKGVTITDAIEAGSLVAFGDQGPRG LLAAQAGMDLLLASGRNVTQGEAIYDALAAALKDGSLDKRAFSNATNRIASLRKKLIKF* |
| Coding | >Pro_DTO377G3_2|g7962.t1 ATGAAGTTCACACAATCTCTTCTTCCTTTCTTCCTTGCCCTTGCGCCTTCAGCTTTGGCTGCTTCCCCGACGGAT CTCCAAGCGCAAATTGGATCCCATGTCATCTACTCTTACCCCGGCCTTGAGCCCTCCGCCCAGCTCCTCGAGCTG ATCAAGGAAGGCAAAGTCGGCGGTATCATCCTCTTCGGCGAGAATGTCAGCGATAACCTCACCACCACAATTGAC AATCTCCAGCAGACCTACAAACAAAGCCCGTACTATTCCGGCAGTCCTTTGCTCGTCATGACGGACCAGGAAGGC GGAGAGGTGCGTCGGTTGTCCGGCGGGCCAGTGTCGAGTGCCAAAGTAGTCGGTGAAGCCGCCGATTACAAAGCG GCCGCGACGCAGATGGGCATTGATGCCGCGACCACCCTCAAGGAATTCCATAACAACGCCAACCTGGCCCCCGTC CTGGATGTGTTCCGCGTGGCCGGGGACTTCGCCGATAACTACCAGCGCTCCTTCAGCAACTCATCCAGCGTCGTT GGGACATGCGGATCTGCATTCATCCACGCCCAGCAGGGTGACGGTGTTGTCGCAACCGTCAAGCACTTCCCCGGC CTGGGTGGAGCAAGCACGACCGAGAATACCGATGTGGAGCCCGTCACCATTGACTTCACCAAGGAGGAGCTCCGC TCGGTGGATATGGCCCCGTATACGAAGGCGATCGCGGCCGGTGTCGACATGGTCATGGCCTCGTGGGCTATCTAC CCTGCTTTGGACGCCAATTACCCCTCCGGACTGAGCAAGGCCATTATCCAGAATGAGCTGCGCGGTAGACTTGGC TTCAAGGGTGTCACTATCACCGATGCTATTGAGGCGGGATCGCTGGTGGCATTTGGCGACCAGGGTCCCCGTGGA TTGTTGGCTGCTCAGGCTGGTATGGATCTCTTGCTTGCCAGTGGGAGGAATGTCACTCAGGGAGAGGCTATTTAC GATGCTCTGGCTGCTGCTTTGAAGGATGGTTCGTTGGACAAGCGTGCATTCTCTAATGCAACCAACAGAATTGCG TCACTTCGCAAGAAGCTTATTAAGTTTTAG |
| Transcript | >Pro_DTO377G3_2|g7962.t1 ATGAAGTTCACACAATCTCTTCTTCCTTTCTTCCTTGCCCTTGCGCCTTCAGCTTTGGCTGCTTCCCCGACGGAT CTCCAAGCGCAAATTGGATCCCATGTCATCTACTCTTACCCCGGCCTTGAGCCCTCCGCCCAGCTCCTCGAGCTG ATCAAGGAAGGCAAAGTCGGCGGTATCATCCTCTTCGGCGAGAATGTCAGCGATAACCTCACCACCACAATTGAC AATCTCCAGCAGACCTACAAACAAAGCCCGTACTATTCCGGCAGTCCTTTGCTCGTCATGACGGACCAGGAAGGC GGAGAGGTGCGTCGGTTGTCCGGCGGGCCAGTGTCGAGTGCCAAAGTAGTCGGTGAAGCCGCCGATTACAAAGCG GCCGCGACGCAGATGGGCATTGATGCCGCGACCACCCTCAAGGAATTCCATAACAACGCCAACCTGGCCCCCGTC CTGGATGTGTTCCGCGTGGCCGGGGACTTCGCCGATAACTACCAGCGCTCCTTCAGCAACTCATCCAGCGTCGTT GGGACATGCGGATCTGCATTCATCCACGCCCAGCAGGGTGACGGTGTTGTCGCAACCGTCAAGCACTTCCCCGGC CTGGGTGGAGCAAGCACGACCGAGAATACCGATGTGGAGCCCGTCACCATTGACTTCACCAAGGAGGAGCTCCGC TCGGTGGATATGGCCCCGTATACGAAGGCGATCGCGGCCGGTGTCGACATGGTCATGGCCTCGTGGGCTATCTAC CCTGCTTTGGACGCCAATTACCCCTCCGGACTGAGCAAGGCCATTATCCAGAATGAGCTGCGCGGTAGACTTGGC TTCAAGGGTGTCACTATCACCGATGCTATTGAGGCGGGATCGCTGGTGGCATTTGGCGACCAGGGTCCCCGTGGA TTGTTGGCTGCTCAGGCTGGTATGGATCTCTTGCTTGCCAGTGGGAGGAATGTCACTCAGGGAGAGGCTATTTAC GATGCTCTGGCTGCTGCTTTGAAGGATGGTTCGTTGGACAAGCGTGCATTCTCTAATGCAACCAACAGAATTGCG TCACTTCGCAAGAAGCTTATTAAGTTTTAG |
| Gene | >Pro_DTO377G3_2|g7962.t1 ATGAAGTTCACACAATCTCTTCTTCCTTTCTTCCTTGCCCTTGCGCCTTCAGCTTTGGCTGCTTCCCCGACGGAT CTCCAAGCGCAAATTGGATCCCATGTCATCTACTCTTACCCCGGCCTTGAGCCCTCCGCCCAGCTCCTCGAGCTG ATCAAGGAAGGCAAAGTCGGCGGTATCATCCTCTTCGGCGAGAATGTCAGCGATAACCTCACCACCACAATTGAC AATCTCCAGCAGACCTACAAACAAAGCCCGTACTATTCCGGCAGTCCTTTGCTCGTCATGACGGACCAGGAAGGC GGAGAGGTGCGTCGGTTGTCCGGCGGGCCAGTGTCGAGTGCCAAAGTAGTCGGTGAAGCCGCCGATTACAAAGCG GCCGCGACGCAGATGGGCATTGATGCCGCGACCACCCTCAAGGAATTCCATAACAACGCCAACCTGGCCCCCGTC CTGGATGTGTTCCGCGTGGCCGGGGACTTCGCCGATAACTACCAGCGCTCCTTCAGCAACTCATCCAGCGTCGTT GGGACATGCGGATCTGCATTCATCCACGCCCAGCAGGGTGACGGTGTTGTCGCAACCGTCAAGCACTTCCCCGGC CTGGGTGGAGCAAGCACGACCGAGAATACCGATGTGGAGCCCGTCACCATTGACTTCACCAAGGAGGAGCTCCGC TCGGTGGATATGGCCCCGTATACGAAGGCGATCGCGGCCGGTGTCGACATGGTCATGGCCTCGTGGGCTATCTAC CCTGCTTTGGACGCCAATTACCCCTCCGGACTGAGCAAGGCCATTATCCAGAATGAGCTGCGCGGTAGACTTGGC TTCAAGGGTGTCACTATCACCGATGCTATTGAGGCGGGATCGCTGGTGGCATTTGGCGACCAGGGTCCCCGTGGA TTGTTGGCTGCTCAGGCTGGTATGGATCTCTTGCTTGCCAGTGGGAGGAATGTCACTCAGGGAGAGGCTATTTAC GATGCTCTGGCTGCTGCTTTGAAGGATGGTTCGTTGGACAAGCGTGCATTCTCTAATGCAACCAACAGAATTGCG TCACTTCGCAAGAAGCTTATTAAGTTTTAG |