© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g7943.t1 |
| Gene name | |
| Location | scaffold_27:227918..229425 |
| Strand | + |
| Gene length (bp) | 1507 |
| Transcript length (bp) | 1293 |
| Coding sequence length (bp) | 1293 |
| Protein length (aa) | 431 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01529 | DHHC | DHHC palmitoyltransferase | 2.7E-32 | 89 | 217 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016409 | palmitoyltransferase activity | Yes |
| GO:0016746 | acyltransferase activity | No |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| 2 | 44 | 63 | 19 |
| 3 | 139 | 158 | 19 |
| 4 | 178 | 200 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 17.29 | 8.16 | 26.43 |
| 5d_25C | Five days - 25 degrees Celsius | 13.40 | 5.85 | 20.94 |
| 7d_25C | Seven days - 25 degrees Celsius | 15.37 | 6.97 | 23.77 |
| 10d_25C | Ten days - 25 degrees Celsius | 15.14 | 6.87 | 23.41 |
| 7d_15C | Seven days - 15 degrees Celsius | 13.54 | 5.86 | 21.22 |
| 7d_30C | Seven days - 30 degrees Celsius | 16.49 | 7.64 | 25.34 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.457400 | no |
| 3d_25C | 7d_25C | 0.766963 | no |
| 3d_25C | 7d_15C | 0.482378 | no |
| 3d_25C | 7d_30C | 0.915711 | no |
| 3d_25C | 10d_25C | 0.733756 | no |
| 5d_25C | 7d_25C | 0.733456 | no |
| 5d_25C | 7d_15C | 0.984071 | no |
| 5d_25C | 7d_30C | 0.579392 | no |
| 5d_25C | 10d_25C | 0.764357 | no |
| 7d_25C | 7d_15C | 0.756518 | no |
| 7d_25C | 7d_30C | 0.874256 | no |
| 7d_25C | 10d_25C | 0.976225 | no |
| 7d_15C | 7d_30C | 0.604378 | no |
| 7d_15C | 10d_25C | 0.789525 | no |
| 7d_30C | 10d_25C | 0.840176 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7943.t1 MLGEDFSITKLAIPAVSVLIAFLAYTSQYLFLHFESAPLKRDEIWNINIFALCIWICYYRTCFVDPGRLPKAEER PKPKEQEGEALASRQRWCRRCEAYKPPRAHHCKTCKRCIPKMDHHCPWTSNCVSHFTIPHFMRFLFYATVGMSYL ETLLWQRASFVWKNSHLPSYLGPTLGQLIHLFILLVVNSFTTFALFVLLLRSLWAIGSNTTTIETWEIERHATLV RRARVLGGYLEGPGGIRVHIKKQEYPYDIGIWANIKQSMGGSANVISWFWPLAASPDRRSGWEFETNDFEDPGVS WPPPDPDRIPVPVSTRSDNISMPAYASIQDEIDAFNRRKQEDMKRFQSPGVQRRKPFHDRYKKGAYAESDSDESG TDSGGYSEEGEESWRNAEGERLRDFGVDEEAEFYDEEDIPLGVLIERRKRQQSAN* |
| Coding | >Pro_DTO377G3_2|g7943.t1 ATGTTGGGCGAGGACTTTTCAATCACTAAGCTCGCAATTCCCGCCGTCAGTGTTCTAATCGCCTTCCTCGCCTAC ACATCACAGTACTTGTTTCTGCATTTCGAGTCTGCGCCTCTCAAGAGGGACGAAATTTGGAACATCAATATCTTC GCTCTGTGCATCTGGATATGCTATTATCGAACCTGCTTTGTAGATCCCGGTCGACTTCCTAAGGCTGAAGAGCGA CCGAAACCCAAAGAGCAAGAAGGTGAAGCACTCGCTAGTCGCCAGCGATGGTGTCGCAGATGTGAAGCTTACAAA CCGCCCCGCGCTCACCACTGCAAGACCTGTAAAAGATGCATTCCTAAAATGGATCATCATTGCCCCTGGACCTCG AACTGCGTCTCACATTTTACCATCCCGCATTTCATGCGCTTTCTATTCTATGCGACTGTTGGCATGTCCTATCTG GAAACTCTTCTCTGGCAGCGTGCATCATTTGTATGGAAGAACAGTCATCTGCCAAGCTATCTCGGCCCCACGTTG GGGCAGCTCATCCACTTGTTCATACTGCTGGTAGTAAATAGTTTCACGACTTTCGCCCTCTTTGTTCTCCTGCTT AGGAGTTTATGGGCAATTGGATCTAACACTACCACCATTGAAACTTGGGAAATCGAGAGGCATGCTACTCTTGTC CGTCGAGCCCGTGTGCTGGGCGGGTATCTTGAGGGCCCTGGAGGAATTCGAGTTCACATAAAAAAGCAGGAATAT CCATACGACATTGGGATCTGGGCCAATATCAAGCAAAGTATGGGCGGGAGCGCGAATGTCATAAGCTGGTTCTGG CCACTGGCCGCATCACCTGATCGCCGGTCCGGCTGGGAATTCGAGACCAATGACTTTGAGGATCCTGGTGTATCA TGGCCACCTCCAGACCCAGATCGAATCCCGGTGCCGGTTAGTACAAGGTCGGATAACATTAGTATGCCTGCATAC GCAAGTATTCAGGACGAGATTGATGCCTTCAATCGTCGTAAACAGGAAGACATGAAGCGATTCCAAAGTCCGGGT GTACAGCGTCGCAAGCCATTTCACGACCGGTACAAAAAAGGTGCCTACGCTGAAAGTGATAGCGATGAGTCCGGA ACTGACTCCGGGGGTTATTCAGAAGAGGGCGAAGAGTCTTGGCGAAACGCCGAAGGAGAACGACTACGCGACTTT GGGGTGGACGAGGAAGCAGAATTCTATGATGAGGAAGACATCCCTCTTGGTGTTCTCATTGAGCGACGGAAGCGG CAGCAATCTGCTAATTGA |
| Transcript | >Pro_DTO377G3_2|g7943.t1 ATGTTGGGCGAGGACTTTTCAATCACTAAGCTCGCAATTCCCGCCGTCAGTGTTCTAATCGCCTTCCTCGCCTAC ACATCACAGTACTTGTTTCTGCATTTCGAGTCTGCGCCTCTCAAGAGGGACGAAATTTGGAACATCAATATCTTC GCTCTGTGCATCTGGATATGCTATTATCGAACCTGCTTTGTAGATCCCGGTCGACTTCCTAAGGCTGAAGAGCGA CCGAAACCCAAAGAGCAAGAAGGTGAAGCACTCGCTAGTCGCCAGCGATGGTGTCGCAGATGTGAAGCTTACAAA CCGCCCCGCGCTCACCACTGCAAGACCTGTAAAAGATGCATTCCTAAAATGGATCATCATTGCCCCTGGACCTCG AACTGCGTCTCACATTTTACCATCCCGCATTTCATGCGCTTTCTATTCTATGCGACTGTTGGCATGTCCTATCTG GAAACTCTTCTCTGGCAGCGTGCATCATTTGTATGGAAGAACAGTCATCTGCCAAGCTATCTCGGCCCCACGTTG GGGCAGCTCATCCACTTGTTCATACTGCTGGTAGTAAATAGTTTCACGACTTTCGCCCTCTTTGTTCTCCTGCTT AGGAGTTTATGGGCAATTGGATCTAACACTACCACCATTGAAACTTGGGAAATCGAGAGGCATGCTACTCTTGTC CGTCGAGCCCGTGTGCTGGGCGGGTATCTTGAGGGCCCTGGAGGAATTCGAGTTCACATAAAAAAGCAGGAATAT CCATACGACATTGGGATCTGGGCCAATATCAAGCAAAGTATGGGCGGGAGCGCGAATGTCATAAGCTGGTTCTGG CCACTGGCCGCATCACCTGATCGCCGGTCCGGCTGGGAATTCGAGACCAATGACTTTGAGGATCCTGGTGTATCA TGGCCACCTCCAGACCCAGATCGAATCCCGGTGCCGGTTAGTACAAGGTCGGATAACATTAGTATGCCTGCATAC GCAAGTATTCAGGACGAGATTGATGCCTTCAATCGTCGTAAACAGGAAGACATGAAGCGATTCCAAAGTCCGGGT GTACAGCGTCGCAAGCCATTTCACGACCGGTACAAAAAAGGTGCCTACGCTGAAAGTGATAGCGATGAGTCCGGA ACTGACTCCGGGGGTTATTCAGAAGAGGGCGAAGAGTCTTGGCGAAACGCCGAAGGAGAACGACTACGCGACTTT GGGGTGGACGAGGAAGCAGAATTCTATGATGAGGAAGACATCCCTCTTGGTGTTCTCATTGAGCGACGGAAGCGG CAGCAATCTGCTAATTGA |
| Gene | >Pro_DTO377G3_2|g7943.t1 ATGTTGGGCGAGGACTTTTCAATCACTAAGCTCGCAATTCCCGCCGTCAGTGTTCTAATCGCCTTCCTCGCCTAC ACATCACAGTACTTGTTTCTGCATTTCGAGTCTGCGCCTCTCAAGAGGGACGAAATTTGGAACATCAATATCTTC GCTCTGTGCATCTGGATATGCTATTATCGAACCTGCTTTGTAGATCCCGGTCGACTTCCTAAGGCTGAAGAGCGA CCGAAACCCAAAGAGCAAGAAGGTGAAGCACTCGCTAGTCGCCAGCGATGGTGTCGCAGATGTGAAGCTTACAAA CCGCCCCGCGCTCACCACTGCAAGACCTGTAAAAGGTTAGATAAGGAATGCTTGATGTGGAGGATTTTGCTGATC TTCTTCTAGATGCATTCCTAAAATGGATCATCATTGCCCCTGGACCTCGAACTGCGTCTCACATTTTACCATCCC GCATTTCATGCGCTTTCTATTCTATGCGACTGTTGGCATGTCCTATCTGGAAACTCTTCTCTGGCAGCGTGCATC ATTTGTATGGAAGAACAGTCATCTGCCAAGCGTAAGTAACTCTGGTACTTCTTTTCATCATTCATGCGGCTAATG TTGAATAGTATCTCGGCCCCACGTTGGGGCAGCTCATCCACTTGTTCATACTGCTGGTAGTAAATAGTTTCACGA CTTTCGCCCTCTTTGTTCTCCTGCTTAGGAGTTTATGGGCAATTGGATCTAACACTACCACCATTGAAACTTGGG AAATCGAGAGGCATGCTACTCTTGTCCGTCGAGCCCGTGTGCTGGGCGGGTATCTTGAGGGCCCTGGAGGAATTC GAGTTCACATAAAAAAGCAGGAATATCCATACGACATTGGGATCTGGGCCAATATCAAGCAAAGTATGGGCGGGA GCGCGAATGTGAGTATGCCTGTTCATGGTCCAAATATTGACACGCAAACACGTAAGCTAATGTCTTTTTAGGTCA TAAGCTGGTTCTGGCCACTGGCCGCATCACCTGATCGCCGGTCCGGCTGGGAATTCGAGACCAATGACTTTGAGG GTGAGTGGTTGAGTCAGTATTGTGGGTTTTCAATTACTGATCTTTTTTAGATCCTGGTGTATCATGGCCACCTCC AGACCCAGATCGAATCCCGGTGCCGGTTAGTACAAGGTCGGATAACATTAGTATGCCTGCATACGCAAGTATTCA GGACGAGATTGATGCCTTCAATCGTCGTAAACAGGAAGACATGAAGCGATTCCAAAGTCCGGGTGTACAGCGTCG CAAGCCATTTCACGACCGGTACAAAAAAGGTGCCTACGCTGAAAGTGATAGCGATGAGTCCGGAACTGACTCCGG GGGTTATTCAGAAGAGGGCGAAGAGTCTTGGCGAAACGCCGAAGGAGAACGACTACGCGACTTTGGGGTGGACGA GGAAGCAGAATTCTATGATGAGGAAGACATCCCTCTTGGTGTTCTCATTGAGCGACGGAAGCGGCAGCAATCTGC TAATTGA |