© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7940.t1 |
| Gene name | |
| Location | scaffold_27:220756..221851 |
| Strand | - |
| Gene length (bp) | 1095 |
| Transcript length (bp) | 1032 |
| Coding sequence length (bp) | 1032 |
| Protein length (aa) | 344 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06966 | DUF1295 | Protein of unknown function (DUF1295) | 1.7E-33 | 57 | 299 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 58 | 0.5 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 137.94 | 83.99 | 191.89 |
| 5d_25C | Five days - 25 degrees Celsius | 207.39 | 125.06 | 289.72 |
| 7d_25C | Seven days - 25 degrees Celsius | 202.81 | 120.51 | 285.11 |
| 10d_25C | Ten days - 25 degrees Celsius | 283.26 | 170.74 | 395.77 |
| 7d_15C | Seven days - 15 degrees Celsius | 233.95 | 136.63 | 331.27 |
| 7d_30C | Seven days - 30 degrees Celsius | 225.94 | 133.89 | 318.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.056162 | no |
| 3d_25C | 7d_25C | 0.075626 | no |
| 3d_25C | 7d_15C | 0.010735 | yes |
| 3d_25C | 7d_30C | 0.019353 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.951508 | no |
| 5d_25C | 7d_15C | 0.678707 | no |
| 5d_25C | 7d_30C | 0.779349 | no |
| 5d_25C | 10d_25C | 0.166745 | no |
| 7d_25C | 7d_15C | 0.606373 | no |
| 7d_25C | 7d_30C | 0.712434 | no |
| 7d_25C | 10d_25C | 0.132943 | no |
| 7d_15C | 7d_30C | 0.920942 | no |
| 7d_15C | 10d_25C | 0.459939 | no |
| 7d_30C | 10d_25C | 0.362855 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7940.t1 MAFFIPPSVLENQAPSALQSPSFRNNITPGDVGILKSTLLPSFSLYYSLSLATYLAAEVTDRVELKDWLWPSAQV LNAWWTAIGHPILKHKISFREACEALPWSERVLLSCVTIWGVRLFARIACRSLSRGTDDARYDAAKKERNFWRRG FMRVFFPEAVILSVISLPFTVPFTMGGATLPIGNDGVNVVRALGVGLFAAGFALEAMADTQLALHRRERTDLCRH GVWSLVRHPNYLGDTLVHFSFALLNMAGPFNPVVILGPVTNYLFLRYVGGDKEIEASQEERYRSQDSDKYRQLQQ WQEEKNSFWPNLRDLANPWTLAVVGSGFIGVVAEEWLRGVYDI* |
| Coding | >Pro_DTO377G3_2|g7940.t1 ATGGCATTTTTCATTCCCCCCTCTGTCCTAGAGAACCAGGCCCCTAGCGCTCTCCAATCCCCATCCTTCAGAAAC AACATCACACCCGGCGACGTAGGAATCCTAAAATCAACCCTCCTACCGTCATTCAGTCTGTATTATAGCCTCTCA CTCGCAACATACCTTGCAGCCGAAGTAACAGACAGAGTCGAACTCAAAGACTGGCTCTGGCCCTCCGCCCAAGTC CTCAATGCCTGGTGGACCGCCATCGGGCACCCGATTTTAAAACACAAGATCTCATTCAGAGAAGCTTGTGAGGCT CTACCATGGTCGGAAAGGGTTCTGCTAAGCTGCGTTACTATCTGGGGCGTGAGACTCTTTGCTCGGATTGCGTGC CGGTCATTGTCCCGCGGGACAGATGATGCGCGGTACGACGCAGCCAAAAAAGAGCGGAACTTTTGGAGACGTGGG TTTATGAGGGTATTTTTCCCGGAGGCTGTTATATTGAGTGTGATCTCTTTGCCGTTCACGGTCCCGTTCACTATG GGTGGAGCTACGCTCCCGATAGGCAATGACGGGGTGAATGTTGTTCGGGCACTTGGTGTTGGACTTTTTGCTGCT GGGTTTGCGTTGGAGGCTATGGCAGATACGCAGCTTGCACTGCATCGACGAGAACGGACGGATTTGTGTCGACAT GGGGTTTGGAGTTTGGTGCGGCATCCGAATTATCTTGGAGACACTTTGGTCCATTTCTCCTTTGCCCTACTCAAC ATGGCTGGTCCATTTAATCCAGTTGTCATACTAGGACCTGTGACGAACTACCTATTCCTTCGATATGTGGGTGGC GATAAGGAAATTGAGGCTAGCCAGGAAGAGCGCTATCGGTCTCAGGATTCAGATAAGTATAGGCAGCTGCAACAG TGGCAGGAAGAGAAAAATAGTTTCTGGCCAAATTTGCGGGACTTGGCGAATCCATGGACATTGGCCGTTGTTGGT AGCGGTTTCATTGGCGTGGTGGCCGAGGAATGGCTGAGAGGGGTTTATGATATATAA |
| Transcript | >Pro_DTO377G3_2|g7940.t1 ATGGCATTTTTCATTCCCCCCTCTGTCCTAGAGAACCAGGCCCCTAGCGCTCTCCAATCCCCATCCTTCAGAAAC AACATCACACCCGGCGACGTAGGAATCCTAAAATCAACCCTCCTACCGTCATTCAGTCTGTATTATAGCCTCTCA CTCGCAACATACCTTGCAGCCGAAGTAACAGACAGAGTCGAACTCAAAGACTGGCTCTGGCCCTCCGCCCAAGTC CTCAATGCCTGGTGGACCGCCATCGGGCACCCGATTTTAAAACACAAGATCTCATTCAGAGAAGCTTGTGAGGCT CTACCATGGTCGGAAAGGGTTCTGCTAAGCTGCGTTACTATCTGGGGCGTGAGACTCTTTGCTCGGATTGCGTGC CGGTCATTGTCCCGCGGGACAGATGATGCGCGGTACGACGCAGCCAAAAAAGAGCGGAACTTTTGGAGACGTGGG TTTATGAGGGTATTTTTCCCGGAGGCTGTTATATTGAGTGTGATCTCTTTGCCGTTCACGGTCCCGTTCACTATG GGTGGAGCTACGCTCCCGATAGGCAATGACGGGGTGAATGTTGTTCGGGCACTTGGTGTTGGACTTTTTGCTGCT GGGTTTGCGTTGGAGGCTATGGCAGATACGCAGCTTGCACTGCATCGACGAGAACGGACGGATTTGTGTCGACAT GGGGTTTGGAGTTTGGTGCGGCATCCGAATTATCTTGGAGACACTTTGGTCCATTTCTCCTTTGCCCTACTCAAC ATGGCTGGTCCATTTAATCCAGTTGTCATACTAGGACCTGTGACGAACTACCTATTCCTTCGATATGTGGGTGGC GATAAGGAAATTGAGGCTAGCCAGGAAGAGCGCTATCGGTCTCAGGATTCAGATAAGTATAGGCAGCTGCAACAG TGGCAGGAAGAGAAAAATAGTTTCTGGCCAAATTTGCGGGACTTGGCGAATCCATGGACATTGGCCGTTGTTGGT AGCGGTTTCATTGGCGTGGTGGCCGAGGAATGGCTGAGAGGGGTTTATGATATATAA |
| Gene | >Pro_DTO377G3_2|g7940.t1 ATGGCATTTTTCATTCCCCCCTCTGTCCTAGAGAACCAGGCCCCTAGCGCTCTCCAATCCCCATCCTTCAGAAAC AACATCACACCCGGCGACGTAGGAATCCTAAAATCAACCCTCCTACCGTCATTCAGTCTGTATTATAGCCTCTCA CTCGCAACATACCTTGCAGCCGAAGTAACAGACAGAGTCGAACTCAAAGACTGGCTCTGGCCCTCCGCCCAAGTC CTCAATGCCTGGTGGACCGCCATCGGGCACCCGATTTTAAAACACAAGATCTCATTCAGAGAAGCTTGTGAGGCT CTACCATGGTCGGAAAGGGTTCTGCTAAGCTGCGTTACTATCTGGGGCGTGAGACTCTTTGCTCGGATTGCGTGC CGGTCATTGTCCCGCGGGACAGATGATGCGCGGTACGACGCAGCCAAAAAAGAGCGGAACTTTTGGAGACGTGGG TTTATGAGGGTATTTTTCCCGGAGGCTGTTATATTGAGTGTGATCTCTTTGCCGTTCACGGTCCCGTTCACTATG GGTGGAGCTACGCTCCCGATAGGCAATGACGGGGTGAATGTTGTTCGGGCACTTGGTGTTGGACTTTTTGCTGCT GGGTTTGCGTTGGAGGCTATGGCAGATACGCAGCTTGCACTGCATCGACGAGAACGGACGGATTTGTGTCGACAT GGGGTTTGGAGTTTGGTGCGGCATCCGAAGTAAGTTTTCGTGATATGTATATCACCCTTTGCGTTCGATGACATG GACTGATGCTTGTCTAGTTATCTTGGAGACACTTTGGTCCATTTCTCCTTTGCCCTACTCAACATGGCTGGTCCA TTTAATCCAGTTGTCATACTAGGACCTGTGACGAACTACCTATTCCTTCGATATGTGGGTGGCGATAAGGAAATT GAGGCTAGCCAGGAAGAGCGCTATCGGTCTCAGGATTCAGATAAGTATAGGCAGCTGCAACAGTGGCAGGAAGAG AAAAATAGTTTCTGGCCAAATTTGCGGGACTTGGCGAATCCATGGACATTGGCCGTTGTTGGTAGCGGTTTCATT GGCGTGGTGGCCGAGGAATGGCTGAGAGGGGTTTATGATATATAA |