© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7935.t1 |
| Gene name | |
| Location | scaffold_27:207456..208702 |
| Strand | - |
| Gene length (bp) | 1246 |
| Transcript length (bp) | 1077 |
| Coding sequence length (bp) | 1077 |
| Protein length (aa) | 359 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02826 | 2-Hacid_dh_C | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 2.6E-11 | 117 | 188 |
| PF02826 | 2-Hacid_dh_C | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 9.7E-25 | 213 | 321 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051287 | NAD binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.60 | 4.50 | 18.70 |
| 5d_25C | Five days - 25 degrees Celsius | 11.58 | 4.51 | 18.65 |
| 7d_25C | Seven days - 25 degrees Celsius | 10.04 | 3.59 | 16.48 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.54 | 1.46 | 9.62 |
| 7d_15C | Seven days - 15 degrees Celsius | 13.60 | 5.62 | 21.57 |
| 7d_30C | Seven days - 30 degrees Celsius | 4.69 | 1.23 | 8.15 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.998067 | no |
| 3d_25C | 7d_25C | 0.757063 | no |
| 3d_25C | 7d_15C | 0.719333 | no |
| 3d_25C | 7d_30C | 0.015268 | yes |
| 3d_25C | 10d_25C | 0.053316 | no |
| 5d_25C | 7d_25C | 0.757571 | no |
| 5d_25C | 7d_15C | 0.715248 | no |
| 5d_25C | 7d_30C | 0.015558 | yes |
| 5d_25C | 10d_25C | 0.051659 | no |
| 7d_25C | 7d_15C | 0.442915 | no |
| 7d_25C | 7d_30C | 0.049575 | yes |
| 7d_25C | 10d_25C | 0.139850 | no |
| 7d_15C | 7d_30C | 0.006000 | yes |
| 7d_15C | 10d_25C | 0.014971 | yes |
| 7d_30C | 10d_25C | 0.767627 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7935.t1 MGDAPLSPEHVLVIFYPTMPEEVKEVILQKFSHAEVTIYESQGTPVPSEVYQKATVLATFSDLPDLKDSKNLKLI HTFSAGVDHILQNPILQETDIPITTSSGIHGPPIAEWTVMNWLVSSRRYAKGYEAQKSHVWDKAAYRPGLHDQVG KKVGILGYGSIGRQIARVSQALGMTVHAYTATPRPTPESRRDNGYIVPGTGDPDGSIPASWHHGADRESLRSFLA TGLDHLVVSLPLTPQTNRLLGAEEFTILSDHSQHHSSKPYVTNISRGRVIDQKALVDALNSGVLSGAALDVTDPE PLPQDDPLWEAANVQISPHVSALGVEYFPRSLDILELNLERIARGGPLINSYTRGKGY* |
| Coding | >Pro_DTO377G3_2|g7935.t1 ATGGGCGACGCGCCATTGTCACCGGAGCATGTGCTCGTTATTTTCTACCCGACGATGCCAGAAGAGGTGAAGGAG GTTATCCTACAGAAATTCTCCCATGCCGAGGTCACTATCTACGAGTCTCAGGGAACCCCTGTGCCATCTGAGGTA TATCAAAAGGCCACCGTCCTCGCGACTTTCAGCGATCTTCCTGATCTCAAGGACTCGAAGAATCTTAAACTAATC CACACCTTCTCTGCTGGCGTGGATCATATTTTGCAAAACCCAATTCTGCAAGAAACTGATATCCCCATCACTACA AGCTCGGGTATCCATGGTCCTCCGATTGCAGAATGGACTGTGATGAATTGGCTGGTATCATCCCGGAGATACGCC AAGGGCTACGAGGCACAGAAATCCCACGTATGGGATAAGGCCGCGTATAGGCCAGGTCTTCATGACCAAGTGGGT AAAAAGGTAGGTATTCTAGGATATGGAAGTATCGGGCGCCAAATCGCCCGCGTCTCGCAAGCATTGGGCATGACC GTGCACGCATACACGGCCACCCCACGCCCAACACCCGAATCCCGGCGTGACAACGGCTACATCGTGCCCGGCACG GGCGATCCCGACGGCTCGATCCCGGCATCGTGGCATCACGGCGCAGACCGCGAATCCCTCCGCTCTTTCCTGGCT ACCGGGCTCGATCATCTGGTGGTCTCACTTCCGCTGACACCGCAAACAAACCGTCTCCTCGGTGCCGAGGAATTC ACCATTCTCTCGGACCATTCTCAGCACCATTCGAGTAAGCCTTACGTGACTAATATCTCCCGGGGTAGGGTTATC GATCAGAAGGCTTTGGTCGATGCTTTGAATTCGGGGGTTTTGAGTGGTGCTGCGCTTGATGTCACGGATCCGGAA CCGCTTCCTCAGGATGATCCGCTCTGGGAGGCTGCCAATGTTCAGATTAGTCCGCATGTCAGCGCGCTTGGGGTG GAGTATTTCCCGCGCTCGCTTGATATCCTTGAGCTAAATCTGGAGCGTATCGCGCGGGGTGGGCCGTTGATTAAC TCTTATACGCGGGGCAAGGGGTATTAG |
| Transcript | >Pro_DTO377G3_2|g7935.t1 ATGGGCGACGCGCCATTGTCACCGGAGCATGTGCTCGTTATTTTCTACCCGACGATGCCAGAAGAGGTGAAGGAG GTTATCCTACAGAAATTCTCCCATGCCGAGGTCACTATCTACGAGTCTCAGGGAACCCCTGTGCCATCTGAGGTA TATCAAAAGGCCACCGTCCTCGCGACTTTCAGCGATCTTCCTGATCTCAAGGACTCGAAGAATCTTAAACTAATC CACACCTTCTCTGCTGGCGTGGATCATATTTTGCAAAACCCAATTCTGCAAGAAACTGATATCCCCATCACTACA AGCTCGGGTATCCATGGTCCTCCGATTGCAGAATGGACTGTGATGAATTGGCTGGTATCATCCCGGAGATACGCC AAGGGCTACGAGGCACAGAAATCCCACGTATGGGATAAGGCCGCGTATAGGCCAGGTCTTCATGACCAAGTGGGT AAAAAGGTAGGTATTCTAGGATATGGAAGTATCGGGCGCCAAATCGCCCGCGTCTCGCAAGCATTGGGCATGACC GTGCACGCATACACGGCCACCCCACGCCCAACACCCGAATCCCGGCGTGACAACGGCTACATCGTGCCCGGCACG GGCGATCCCGACGGCTCGATCCCGGCATCGTGGCATCACGGCGCAGACCGCGAATCCCTCCGCTCTTTCCTGGCT ACCGGGCTCGATCATCTGGTGGTCTCACTTCCGCTGACACCGCAAACAAACCGTCTCCTCGGTGCCGAGGAATTC ACCATTCTCTCGGACCATTCTCAGCACCATTCGAGTAAGCCTTACGTGACTAATATCTCCCGGGGTAGGGTTATC GATCAGAAGGCTTTGGTCGATGCTTTGAATTCGGGGGTTTTGAGTGGTGCTGCGCTTGATGTCACGGATCCGGAA CCGCTTCCTCAGGATGATCCGCTCTGGGAGGCTGCCAATGTTCAGATTAGTCCGCATGTCAGCGCGCTTGGGGTG GAGTATTTCCCGCGCTCGCTTGATATCCTTGAGCTAAATCTGGAGCGTATCGCGCGGGGTGGGCCGTTGATTAAC TCTTATACGCGGGGCAAGGGGTATTAG |
| Gene | >Pro_DTO377G3_2|g7935.t1 ATGGGCGACGCGCCATTGTCACCGGAGCATGTGCTCGTTATTTTCTACCCGACGATGCCAGAAGAGGTGAAGGAG GTTATCCTACAGAAATTCTCCCATGCCGAGGTCACTATCTACGAGTCTCAGGGAACCCCTGTGCCATCTGGTAAG TGGCTATCATTCTTGAAAATCGAGGTCACAAAAACTAAACTCGCGCAGAGGTATATCAAAAGGCCACCGTCCTCG CGACTTTCAGCGATCTTCCTGATCTCAAGGACTCGAAGAAGTAAGCTCCTACCTCAATCATTCCTACTATGTATT AACCATTACTATAGTCTTAAACTAATCCACACCTTCTCTGCTGGCGTGGATCATATTTTGCAAAACCCAATTCTG CAAGAAACTGATATCCCCATCACTACAAGCTCGGGTATCCATGGTCCTCCGATTGCAGAATGGACTGTGATGAAT TGGCTGGTATCATCCCGGAGATACGCCAAGGGCTACGAGGCACAGAAATCCCACGTATGGGATAAGGCCGCGTAT AGGCCAGGTCTTCATGACCAAGTGGGTAAAAAGGTAGGTATTCTAGGATATGGAAGTATCGGGCGCCAAAGTATG TTTCCGCACATCCACTCGCTGGAAATTCCATAAACAAGATACCAAAAGTTAACCATCGACAGTCGCCCGCGTCTC GCAAGCATTGGGCATGACCGTGCACGCATACACGGCCACCCCACGCCCAACACCCGAATCCCGGCGTGACAACGG CTACATCGTGCCCGGCACGGGCGATCCCGACGGCTCGATCCCGGCATCGTGGCATCACGGCGCAGACCGCGAATC CCTCCGCTCTTTCCTGGCTACCGGGCTCGATCATCTGGTGGTCTCACTTCCGCTGACACCGCAAACAAACCGTCT CCTCGGTGCCGAGGAATTCACCATTCTCTCGGACCATTCTCAGCACCATTCGAGTAAGCCTTACGTGACTAATAT CTCCCGGGGTAGGGTTATCGATCAGAAGGCTTTGGTCGATGCTTTGAATTCGGGGGTTTTGAGTGGTGCTGCGCT TGATGTCACGGATCCGGAACCGCTTCCTCAGGATGATCCGCTCTGGGAGGCTGCCAATGTTCAGATTAGTCCGCA TGTCAGCGCGCTTGGGGTGGAGTATTTCCCGCGCTCGCTTGATATCCTTGAGCTAAATCTGGAGCGTATCGCGCG GGGTGGGCCGTTGATTAACTCTTATACGCGGGGCAAGGGGTATTAG |