© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7934.t1 |
| Gene name | |
| Location | scaffold_27:205496..207333 |
| Strand | + |
| Gene length (bp) | 1837 |
| Transcript length (bp) | 1680 |
| Coding sequence length (bp) | 1680 |
| Protein length (aa) | 560 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 2.7E-108 | 62 | 520 |
| PF13520 | AA_permease_2 | Amino acid permease | 4.0E-28 | 65 | 497 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 66 | 88 | 22 |
| 2 | 98 | 120 | 22 |
| 3 | 133 | 155 | 22 |
| 4 | 170 | 192 | 22 |
| 5 | 204 | 226 | 22 |
| 6 | 246 | 268 | 22 |
| 7 | 292 | 314 | 22 |
| 8 | 329 | 351 | 22 |
| 9 | 388 | 410 | 22 |
| 10 | 416 | 438 | 22 |
| 11 | 467 | 489 | 22 |
| 12 | 494 | 516 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.28 | 0.90 | 5.66 |
| 5d_25C | Five days - 25 degrees Celsius | 2.69 | 0.62 | 4.77 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.32 | 0.35 | 4.30 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.27 | 0.05 | 2.49 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.65 | 1.27 | 8.04 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.00 | 0.32 | 3.67 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.723731 | no |
| 3d_25C | 7d_25C | 0.511166 | no |
| 3d_25C | 7d_15C | 0.443635 | no |
| 3d_25C | 7d_30C | 0.311374 | no |
| 3d_25C | 10d_25C | 0.059864 | no |
| 5d_25C | 7d_25C | 0.816333 | no |
| 5d_25C | 7d_15C | 0.203824 | no |
| 5d_25C | 7d_30C | 0.597973 | no |
| 5d_25C | 10d_25C | 0.146877 | no |
| 7d_25C | 7d_15C | 0.117102 | no |
| 7d_25C | 7d_30C | 0.826229 | no |
| 7d_25C | 10d_25C | 0.284490 | no |
| 7d_15C | 7d_30C | 0.051079 | no |
| 7d_15C | 10d_25C | 0.008133 | yes |
| 7d_30C | 10d_25C | 0.449820 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7934.t1 MAGVFEEKSSKTGSQYVVHNFHDVEDQPFTPQGPLSAAIPDDGQIVTQNERQSLIRGLGQRHIQMIAIAGAIGTG LFLGLGGSIATGGPLGALLGYMFIGLIVCCIQFALGEVSALLPVTGSFVRHAEILVDPALAFAIGWNVVYGCFLS VPSEISASVVLIQYWTDINAAVWVTILIVVSVVVAVSFIGVYGEIEFIFAILKILLVVFVVILGLVIDLGGAPGV PRRGFHYWKDPGPFVEYIATGSWGQFLGFWAVMTNAVYSFAGVESLAMAAAETQNPRQNIPKACKRVFARVSIFY LATVLIVGMLVSSADDRISADSGTAATSPFVIAASDAGIRAIPSVVNAVCLSSAWSASNQSILAGTRTLYGLALK GHAPKIFLRTSKWGVPYMCVLLQMAFSLLAYMCVSNDAMNVFWWFVDLTAAGTLVSWIAIAFNHIRLMQAMDKQG ISPTELPWHNRITRYTSWFALVACVIILFTGGFTVFTTGNWDTASFISSYLDIPLVLFAYGAYKLIRRTNIIPLR TIPVQQAIDEANNDPDNLPIKKDSILAKMNIFWG* |
| Coding | >Pro_DTO377G3_2|g7934.t1 ATGGCAGGGGTATTCGAGGAAAAGAGCTCTAAGACAGGGAGTCAGTACGTCGTGCACAATTTTCACGATGTGGAA GATCAACCCTTCACCCCACAAGGTCCTTTGAGCGCTGCCATCCCCGACGACGGGCAGATCGTTACCCAGAATGAA CGCCAAAGCTTGATCCGGGGTCTGGGGCAGCGCCATATTCAGATGATTGCCATTGCGGGCGCAATTGGTACGGGT CTCTTTCTCGGTCTGGGTGGCTCGATCGCCACCGGTGGTCCTCTGGGTGCCCTTTTAGGCTACATGTTCATCGGC CTGATAGTCTGCTGCATCCAATTTGCGCTGGGAGAAGTCTCAGCGCTGCTACCAGTCACCGGTTCTTTTGTGCGA CATGCAGAGATTTTGGTCGATCCCGCGCTCGCATTTGCGATCGGCTGGAATGTCGTTTATGGATGCTTTCTCAGC GTTCCCAGTGAGATCTCCGCCAGCGTGGTTCTTATTCAGTACTGGACGGATATCAACGCCGCCGTCTGGGTGACT ATCCTCATAGTGGTGTCGGTGGTGGTTGCCGTCTCGTTTATTGGCGTCTACGGCGAGATTGAATTTATCTTCGCC ATTCTGAAGATCCTGCTGGTTGTCTTCGTGGTCATTCTCGGTCTTGTTATCGATCTCGGCGGTGCGCCGGGTGTG CCCCGACGCGGCTTCCACTACTGGAAAGACCCCGGCCCATTCGTTGAGTACATTGCCACCGGGTCTTGGGGACAA TTTCTCGGGTTCTGGGCTGTCATGACTAATGCAGTCTACTCGTTCGCTGGCGTGGAATCATTAGCCATGGCCGCC GCCGAAACGCAAAACCCACGACAGAATATCCCCAAGGCCTGCAAAAGGGTGTTCGCACGAGTCTCTATCTTCTAC CTTGCCACCGTCTTGATCGTGGGCATGTTAGTCTCTAGCGCCGACGACCGTATTAGCGCAGACTCCGGCACGGCG GCCACGAGTCCGTTCGTCATTGCCGCCAGCGACGCAGGTATCAGGGCTATTCCCTCCGTTGTGAACGCAGTATGC TTGAGCTCTGCGTGGTCTGCATCGAACCAGAGTATTCTGGCCGGAACAAGAACTCTATATGGTCTAGCGCTCAAG GGCCATGCTCCGAAGATATTCCTGCGCACCTCCAAGTGGGGAGTGCCGTACATGTGTGTGCTGCTGCAGATGGCA TTCTCTCTACTGGCTTACATGTGTGTTTCCAACGACGCAATGAACGTCTTCTGGTGGTTCGTTGATTTGACTGCG GCTGGTACCTTGGTCTCGTGGATTGCTATCGCTTTCAACCATATTCGTCTGATGCAAGCAATGGATAAACAGGGC ATATCGCCAACAGAGTTGCCGTGGCATAACCGAATTACCAGATACACAAGCTGGTTTGCGCTGGTCGCATGTGTC ATAATTCTCTTCACTGGAGGATTCACAGTCTTCACAACAGGAAACTGGGATACCGCCTCGTTCATCTCGTCGTAT CTGGACATTCCACTCGTCCTCTTTGCGTACGGGGCTTATAAGTTGATCCGCCGCACAAATATCATTCCTCTAAGG ACGATACCGGTTCAACAAGCGATAGACGAGGCCAACAACGACCCGGACAACTTGCCGATCAAGAAAGACAGCATA CTGGCAAAGATGAATATTTTCTGGGGCTGA |
| Transcript | >Pro_DTO377G3_2|g7934.t1 ATGGCAGGGGTATTCGAGGAAAAGAGCTCTAAGACAGGGAGTCAGTACGTCGTGCACAATTTTCACGATGTGGAA GATCAACCCTTCACCCCACAAGGTCCTTTGAGCGCTGCCATCCCCGACGACGGGCAGATCGTTACCCAGAATGAA CGCCAAAGCTTGATCCGGGGTCTGGGGCAGCGCCATATTCAGATGATTGCCATTGCGGGCGCAATTGGTACGGGT CTCTTTCTCGGTCTGGGTGGCTCGATCGCCACCGGTGGTCCTCTGGGTGCCCTTTTAGGCTACATGTTCATCGGC CTGATAGTCTGCTGCATCCAATTTGCGCTGGGAGAAGTCTCAGCGCTGCTACCAGTCACCGGTTCTTTTGTGCGA CATGCAGAGATTTTGGTCGATCCCGCGCTCGCATTTGCGATCGGCTGGAATGTCGTTTATGGATGCTTTCTCAGC GTTCCCAGTGAGATCTCCGCCAGCGTGGTTCTTATTCAGTACTGGACGGATATCAACGCCGCCGTCTGGGTGACT ATCCTCATAGTGGTGTCGGTGGTGGTTGCCGTCTCGTTTATTGGCGTCTACGGCGAGATTGAATTTATCTTCGCC ATTCTGAAGATCCTGCTGGTTGTCTTCGTGGTCATTCTCGGTCTTGTTATCGATCTCGGCGGTGCGCCGGGTGTG CCCCGACGCGGCTTCCACTACTGGAAAGACCCCGGCCCATTCGTTGAGTACATTGCCACCGGGTCTTGGGGACAA TTTCTCGGGTTCTGGGCTGTCATGACTAATGCAGTCTACTCGTTCGCTGGCGTGGAATCATTAGCCATGGCCGCC GCCGAAACGCAAAACCCACGACAGAATATCCCCAAGGCCTGCAAAAGGGTGTTCGCACGAGTCTCTATCTTCTAC CTTGCCACCGTCTTGATCGTGGGCATGTTAGTCTCTAGCGCCGACGACCGTATTAGCGCAGACTCCGGCACGGCG GCCACGAGTCCGTTCGTCATTGCCGCCAGCGACGCAGGTATCAGGGCTATTCCCTCCGTTGTGAACGCAGTATGC TTGAGCTCTGCGTGGTCTGCATCGAACCAGAGTATTCTGGCCGGAACAAGAACTCTATATGGTCTAGCGCTCAAG GGCCATGCTCCGAAGATATTCCTGCGCACCTCCAAGTGGGGAGTGCCGTACATGTGTGTGCTGCTGCAGATGGCA TTCTCTCTACTGGCTTACATGTGTGTTTCCAACGACGCAATGAACGTCTTCTGGTGGTTCGTTGATTTGACTGCG GCTGGTACCTTGGTCTCGTGGATTGCTATCGCTTTCAACCATATTCGTCTGATGCAAGCAATGGATAAACAGGGC ATATCGCCAACAGAGTTGCCGTGGCATAACCGAATTACCAGATACACAAGCTGGTTTGCGCTGGTCGCATGTGTC ATAATTCTCTTCACTGGAGGATTCACAGTCTTCACAACAGGAAACTGGGATACCGCCTCGTTCATCTCGTCGTAT CTGGACATTCCACTCGTCCTCTTTGCGTACGGGGCTTATAAGTTGATCCGCCGCACAAATATCATTCCTCTAAGG ACGATACCGGTTCAACAAGCGATAGACGAGGCCAACAACGACCCGGACAACTTGCCGATCAAGAAAGACAGCATA CTGGCAAAGATGAATATTTTCTGGGGCTGA |
| Gene | >Pro_DTO377G3_2|g7934.t1 ATGGCAGGGGTATTCGAGGAAAAGAGCTCTAAGACAGGGAGTCAGTACGTCGTGCACAATTTTCACGATGTGGAA GATCAACCCTTCACCCCACAAGGTCCTTTGAGCGCTGCCATCCCCGACGACGGGCAGATCGTTACCCAGAATGAA CGCCAAAGCTTGATCCGGGGTCTGGGGCAGCGCCATATTCAGATGATTGCCATTGCGGGCGCAATTGTACGCAAA CTGTTTATTAGGATTGCAACTTTGTGACTGACCTAAATAGGGTACGGGTCTCTTTCTCGGTCTGGGTGGCTCGAT CGCCACCGGTGGTCCTCTGGGTGCCCTTTTAGGCTACATGTTCATCGGCCTGATAGTCTGCTGCATCCAATTTGC GCTGGGAGAAGTCTCAGCGCTGCTACCAGTCACCGGTTCTTTTGTGCGACATGCAGAGATTTTGGTCGATCCCGC GCTCGCATTTGCGATCGGCTGGAATGTCGTTTATGGATGCTTTCTCAGCGTTCCCAGTGAGATCTCCGCCAGCGT GGTTCTTATTCAGTACTGGACGGATATCAACGCCGCCGTCTGGGTGACTATCCTCATAGTGGTGTCGGTGGTGGT TGCCGTCTCGTTTATTGGCGTCTACGGCGAGATTGAATTTATCTTCGCCATTCTGAAGATCCTGCTGGTTGTCTT CGTGGTCATTCTCGGTCTTGTTATCGATCTCGGCGGTGCGCCGGGTGTGCCCCGACGCGGCTTCCACTACTGGAA AGACCCCGGCCCATTCGTTGAGTACATTGCCACCGGGTCTTGGGGACAATTTCTCGGGTTCTGGGCTGTCATGAC TAATGCAGTCTACTCGTTCGCTGGCGTGGAATCATTAGCCATGGCCGCCGCCGAAACGCAAAACCCACGACAGAA TATCCCCAAGGCCTGCAAAAGGGTGTTCGCACGAGTCTCTATCTTCTACCTTGCCACCGTCTTGATCGTGGGCAT GTTAGTCTCTAGCGCCGACGACCGTATTAGCGCAGACTCCGGCACGGCGGCCACGAGTCCGTTCGTCATTGCCGC CAGCGACGCAGGTATCAGGGCTATTCCCTCCGTTGTGAACGCAGTATGCTTGAGCTCTGCGTGGTCTGCATCGAA CCAGAGTATTCTGGCCGGAACAAGAACTCTATATGGTCTAGCGCTCAAGGGCCATGCTCCGAAGATATTCCTGCG CACCTCCAAGTGGGGAGTGCCGTACATGTGTGTGCTGCTGCAGATGGCATTCTCTCTACTGGCTTACATGTGTGT TTCCAACGACGCAATGAACGTCTTCTGGTGGTTCGTTGATTTGACTGCGGCTGGTACCTTGGTCTCGTGGATTGC TATCGCTTTCAACCATATTCGTCTGATGCAAGCAATGGATAAACAGGGCATATCGCCAACAGAGTTGCCGTGGCA TAACCGAATTACCAGTATGTATCAGTCTGGTTTCAGATCAGTCTTGAGGTTCTAATACTGACCTTATCAAGGATA CACAAGCTGGTTTGCGCTGGTCGCATGTGTCATAATTCTCTTCACTGGAGGATTCACAGTCTTCACAACAGGAAA CTGGGATACCGCCTCGTTCATCTCGTCGTATCTGTGAGTTTTCTTCTCGTACCATTGAGTTCGATCTGCTAACAT TGACACTAGGGACATTCCACTCGTCCTCTTTGCGTACGGGGCTTATAAGTTGATCCGCCGCACAAATATCATTCC TCTAAGGACGATACCGGTTCAACAAGCGATAGACGAGGCCAACAACGACCCGGACAACTTGCCGATCAAGAAAGA CAGCATACTGGCAAAGATGAATATTTTCTGGGGCTGA |