© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g7916.t1 |
| Gene name | |
| Location | scaffold_27:141635..143188 |
| Strand | - |
| Gene length (bp) | 1553 |
| Transcript length (bp) | 1329 |
| Coding sequence length (bp) | 1329 |
| Protein length (aa) | 443 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 1.8E-05 | 244 | 267 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 59 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 94.19 | 57.73 | 130.66 |
| 5d_25C | Five days - 25 degrees Celsius | 151.48 | 92.49 | 210.46 |
| 7d_25C | Seven days - 25 degrees Celsius | 156.22 | 95.28 | 217.17 |
| 10d_25C | Ten days - 25 degrees Celsius | 256.00 | 152.90 | 359.10 |
| 7d_15C | Seven days - 15 degrees Celsius | 106.42 | 64.96 | 147.88 |
| 7d_30C | Seven days - 30 degrees Celsius | 182.13 | 110.96 | 253.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.017762 | yes |
| 3d_25C | 7d_25C | 0.011062 | yes |
| 3d_25C | 7d_15C | 0.659007 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.927755 | no |
| 5d_25C | 7d_15C | 0.103139 | no |
| 5d_25C | 7d_30C | 0.464178 | no |
| 5d_25C | 10d_25C | 0.011062 | yes |
| 7d_25C | 7d_15C | 0.071215 | no |
| 7d_25C | 7d_30C | 0.555004 | no |
| 7d_25C | 10d_25C | 0.017485 | yes |
| 7d_15C | 7d_30C | 0.004450 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.124534 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7916.t1 MSENDDLLAKIGQLAGQINRHKTQETQPANYQSQYVSRHVPSHTGWAPYYRGRGRGRRGAAAPHRHRTLVLNTAG AGSTPSANSSPAPSSANDSAAVSTPSSSNGWVVKHDRHMQLINPAVYDRKTQDRTKDMERTRKLREQKKTEYEKA KVLRYAQGPGTGAVVSTAANPAAGHQILVNDVPFRVANGGSKLIRISNDPSTANSTPKRVTVADVSFVRSKNGNL HRLGAVAMKKNHTVKKRDELCKRFTTTGTCYKGPTCQFVHDPSKVAMCKDFLQTGKCAAGSSCDLSHEPSPHRSP TCMHFLRGRCANPECRYAHVRVTPGAPVCRAFATLGYCEKGDACEEKHVHECPDYANTGACHKKRCQLPHVDRAG QIRKAAAAAASKADLGEDESDQSSEEENYDAIDSDDVDSDTFDDSPEELIEGVDSGELSQQQDFIRF* |
| Coding | >Pro_DTO377G3_2|g7916.t1 ATGAGCGAAAACGACGATCTCCTGGCCAAGATCGGTCAGCTTGCAGGCCAAATAAACCGCCACAAGACGCAAGAG ACCCAGCCAGCTAACTACCAGTCTCAATATGTGTCTCGCCATGTCCCTTCTCACACAGGATGGGCCCCATACTAC AGGGGACGCGGTCGAGGACGTCGTGGAGCAGCTGCTCCGCACCGACACCGCACGCTGGTTTTGAACACCGCGGGC GCTGGTTCGACCCCTAGCGCCAACTCATCACCCGCCCCGAGTAGTGCGAACGACAGCGCGGCGGTTTCGACACCA TCTTCTAGCAATGGTTGGGTCGTGAAGCACGATCGCCACATGCAGCTGATCAACCCTGCTGTCTACGATCGGAAA ACACAGGACAGGACAAAGGATATGGAACGAACGCGCAAGCTTAGAGAACAGAAAAAAACAGAGTATGAAAAAGCG AAAGTACTTCGATATGCACAGGGTCCAGGTACTGGTGCAGTGGTCTCCACCGCTGCAAATCCTGCAGCTGGCCAT CAGATTCTTGTCAATGATGTTCCTTTCAGGGTCGCAAATGGCGGAAGCAAACTGATTCGTATTTCGAATGACCCT AGTACTGCCAACAGTACGCCTAAGCGCGTCACAGTTGCCGATGTGTCCTTTGTGCGAAGCAAAAACGGAAACCTC CACCGTCTCGGTGCTGTGGCTATGAAGAAGAATCATACTGTTAAGAAGCGCGATGAGCTTTGCAAAAGATTTACA ACAACCGGCACTTGCTACAAAGGCCCGACCTGCCAATTCGTCCATGACCCTAGTAAGGTCGCTATGTGCAAGGAC TTCCTCCAGACAGGCAAATGTGCCGCAGGTAGTAGCTGTGATCTATCCCATGAGCCTTCGCCCCATCGCTCCCCC ACTTGTATGCATTTCCTTAGAGGACGCTGCGCCAACCCGGAATGTCGCTACGCCCACGTCCGCGTGACACCCGGT GCCCCCGTCTGCCGCGCCTTTGCAACCCTAGGATACTGCGAAAAGGGCGACGCCTGCGAAGAGAAGCACGTCCAC GAGTGCCCAGACTATGCCAATACCGGCGCCTGCCACAAAAAGCGCTGCCAGCTGCCGCATGTTGACCGCGCGGGC CAGATCCGCAAGGCTGCTGCGGCTGCTGCTAGCAAAGCTGATTTGGGTGAAGATGAGTCTGATCAGTCTAGCGAG GAAGAAAACTATGACGCTATTGATTCGGACGACGTTGACTCGGATACATTCGACGACTCCCCCGAAGAACTGATC GAAGGTGTGGACAGCGGCGAGTTGTCGCAGCAGCAAGACTTTATCCGCTTCTAA |
| Transcript | >Pro_DTO377G3_2|g7916.t1 ATGAGCGAAAACGACGATCTCCTGGCCAAGATCGGTCAGCTTGCAGGCCAAATAAACCGCCACAAGACGCAAGAG ACCCAGCCAGCTAACTACCAGTCTCAATATGTGTCTCGCCATGTCCCTTCTCACACAGGATGGGCCCCATACTAC AGGGGACGCGGTCGAGGACGTCGTGGAGCAGCTGCTCCGCACCGACACCGCACGCTGGTTTTGAACACCGCGGGC GCTGGTTCGACCCCTAGCGCCAACTCATCACCCGCCCCGAGTAGTGCGAACGACAGCGCGGCGGTTTCGACACCA TCTTCTAGCAATGGTTGGGTCGTGAAGCACGATCGCCACATGCAGCTGATCAACCCTGCTGTCTACGATCGGAAA ACACAGGACAGGACAAAGGATATGGAACGAACGCGCAAGCTTAGAGAACAGAAAAAAACAGAGTATGAAAAAGCG AAAGTACTTCGATATGCACAGGGTCCAGGTACTGGTGCAGTGGTCTCCACCGCTGCAAATCCTGCAGCTGGCCAT CAGATTCTTGTCAATGATGTTCCTTTCAGGGTCGCAAATGGCGGAAGCAAACTGATTCGTATTTCGAATGACCCT AGTACTGCCAACAGTACGCCTAAGCGCGTCACAGTTGCCGATGTGTCCTTTGTGCGAAGCAAAAACGGAAACCTC CACCGTCTCGGTGCTGTGGCTATGAAGAAGAATCATACTGTTAAGAAGCGCGATGAGCTTTGCAAAAGATTTACA ACAACCGGCACTTGCTACAAAGGCCCGACCTGCCAATTCGTCCATGACCCTAGTAAGGTCGCTATGTGCAAGGAC TTCCTCCAGACAGGCAAATGTGCCGCAGGTAGTAGCTGTGATCTATCCCATGAGCCTTCGCCCCATCGCTCCCCC ACTTGTATGCATTTCCTTAGAGGACGCTGCGCCAACCCGGAATGTCGCTACGCCCACGTCCGCGTGACACCCGGT GCCCCCGTCTGCCGCGCCTTTGCAACCCTAGGATACTGCGAAAAGGGCGACGCCTGCGAAGAGAAGCACGTCCAC GAGTGCCCAGACTATGCCAATACCGGCGCCTGCCACAAAAAGCGCTGCCAGCTGCCGCATGTTGACCGCGCGGGC CAGATCCGCAAGGCTGCTGCGGCTGCTGCTAGCAAAGCTGATTTGGGTGAAGATGAGTCTGATCAGTCTAGCGAG GAAGAAAACTATGACGCTATTGATTCGGACGACGTTGACTCGGATACATTCGACGACTCCCCCGAAGAACTGATC GAAGGTGTGGACAGCGGCGAGTTGTCGCAGCAGCAAGACTTTATCCGCTTCTAA |
| Gene | >Pro_DTO377G3_2|g7916.t1 ATGAGCGAAAACGACGATCTCCTGGCCAAGATCGGTCAGCTTGCAGGTGCGCTCAGTATCAGTTCACCGTCAAGA CAAAGCTAACATGAAAAGGCCAAATAAACCGCCACAAGACGCAAGAGACCCAGCCAGCTAACTACCAGTCTCAAT ATGTGTCTCGCCATGTCCCTTCTCACACAGGATGGGCCCCATACTACAGGGGACGCGGTCGAGGACGTCGTGGAG CAGCTGCTCCGCACCGACACCGCACGCTGGTTTTGAACACCGCGGGCGCTGGTTCGACCCCTAGCGCCAACTCAT CACCCGCCCCGAGTAGTGCGAACGACAGCGCGGCGGTTTCGACACCATCTTCTAGCAATGGTTGGGTCGTGAAGC ACGATCGCCACATGCAGCTGATCAACCCTGCTGTCTACGATCGGAAAACACAGGACAGGACAAAGGATATGGAAC GAACGCGCAAGCTTAGAGAACAGAAAAAAACAGAGTATGAAAAAGCGAAAGTACTTCGATATGCACAGGGTCCAG GTACTGGTGCAGTGGTCTCCACCGCTGCAAATCCTGCAGCTGGCCATCAGATTCTTGTCAATGATGTTCCTTTCA GGGTCGCAAATGGCGGAAGCAAACTGATTCGTATTTCGAGTGCGTGCACCCTTCGCTCTTCCTCTCGAATTGGCT TACCCTTCATAGATGACCCTAGTACTGCCAACAGTACGCCTAAGCGCGTCACAGTTGCCGATGTGTCCTTTGTGC GAAGCAAAAACGGAAACCTCCACCGTCTCGGTGCTGTGGCTATGAAGAAGTGAGTCTTGGTTTTAATGATGGTTA CCTTTATACTAACCTTGCAATAGGAATCATACTGTTAAGAAGCGCGATGAGCTTTGCAAAAGATTTACAACAACC GGTATTTTGTTTTCCGACGGGCCATACTTCTATGCTCTACCCTATAAGTATGCTCAAAAACTAATACGTCTAATT TTCTAGGCACTTGCTACAAAGGCCCGACCTGCCAATTCGTCCATGACCCTAGTAAGGTCGCTATGTGCAAGGACT TCCTCCAGACAGGCAAATGTGCCGCAGGTAGTAGCTGTGATCTATCCCATGAGCCTTCGCCCCATCGCTCCCCCA CTTGTATGCATTTCCTTAGAGGACGCTGCGCCAACCCGGAATGTCGCTACGCCCACGTCCGCGTGACACCCGGTG CCCCCGTCTGCCGCGCCTTTGCAACCCTAGGATACTGCGAAAAGGGCGACGCCTGCGAAGAGAAGCACGTCCACG AGTGCCCAGACTATGCCAATACCGGCGCCTGCCACAAAAAGCGCTGCCAGCTGCCGCATGTTGACCGCGCGGGCC AGATCCGCAAGGCTGCTGCGGCTGCTGCTAGCAAAGCTGATTTGGGTGAAGATGAGTCTGATCAGTCTAGCGAGG AAGAAAACTATGACGCTATTGATTCGGACGACGTTGACTCGGATACATTCGACGACTCCCCCGAAGAACTGATCG AAGGTGTGGACAGCGGCGAGTTGTCGCAGCAGCAAGACTTTATCCGCTTCTAA |