© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7910.t1 |
| Gene name | |
| Location | scaffold_27:124192..125857 |
| Strand | - |
| Gene length (bp) | 1665 |
| Transcript length (bp) | 1449 |
| Coding sequence length (bp) | 1449 |
| Protein length (aa) | 483 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00171 | Aldedh | Aldehyde dehydrogenase family | 2.2E-135 | 22 | 478 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 32.33 | 18.09 | 46.58 |
| 5d_25C | Five days - 25 degrees Celsius | 41.05 | 23.87 | 58.23 |
| 7d_25C | Seven days - 25 degrees Celsius | 43.86 | 25.50 | 62.21 |
| 10d_25C | Ten days - 25 degrees Celsius | 46.94 | 27.75 | 66.13 |
| 7d_15C | Seven days - 15 degrees Celsius | 49.51 | 27.92 | 71.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 40.77 | 23.65 | 57.89 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.370398 | no |
| 3d_25C | 7d_25C | 0.220375 | no |
| 3d_25C | 7d_15C | 0.075626 | no |
| 3d_25C | 7d_30C | 0.383995 | no |
| 3d_25C | 10d_25C | 0.114080 | no |
| 5d_25C | 7d_25C | 0.843313 | no |
| 5d_25C | 7d_15C | 0.505218 | no |
| 5d_25C | 7d_30C | 0.985865 | no |
| 5d_25C | 10d_25C | 0.654481 | no |
| 7d_25C | 7d_15C | 0.694857 | no |
| 7d_25C | 7d_30C | 0.823240 | no |
| 7d_25C | 10d_25C | 0.841189 | no |
| 7d_15C | 7d_30C | 0.487327 | no |
| 7d_15C | 10d_25C | 0.883073 | no |
| 7d_30C | 10d_25C | 0.632639 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7910.t1 MPNSTNPGFTVPLLINGHEETTPNTFPVTSPYTNTTIWTASAATPQDAIRAVEAASAAFPSWSQTKPTVRRDILL KAADLLEARLDTNAEYMRQEMGADVGASAGFVVPLAVRMLREVASRITSICGSVPVVETEGQSAIVFKEAMGVIL GIVPWNAPYVFGIRSAACALAAGNTTVLKSSELTPRCYWAIGRAFEDAGLPAGCLNIIHCAPQDAPEVVNAMIEH EAVRKINFTGSTAVGRKIARACGQNLKPCLMELGGKNSSIVCRDADLQTAVQGVLAGAFLNSGQICMATDRILVH TSILPAFTEALQKALAAGAAASALPPTLVNTASKTRVEALIASAVSAGAHFISGSADSVPTDSGVRMAPAVLGGV TEDMALWQEESFASVAACMPFDSEDEAIRLANGSGYGLSASVFTEDLRRGLAMARRIQSGAVHINSMTIHDEPAL PHGGVKNSGWGRFNTDEGLNEFLVTKSVTWMD* |
| Coding | >Pro_DTO377G3_2|g7910.t1 ATGCCAAACTCAACCAACCCCGGATTCACCGTCCCCCTCCTCATAAACGGCCATGAAGAAACAACCCCCAATACC TTCCCAGTAACAAGCCCCTACACCAACACGACCATCTGGACCGCCTCGGCCGCAACACCCCAAGATGCAATCCGC GCCGTCGAAGCCGCCTCCGCCGCCTTCCCCTCATGGTCGCAGACCAAACCAACCGTGAGACGCGACATCCTCCTC AAAGCCGCCGATCTCCTCGAAGCCCGCCTCGACACGAACGCCGAGTACATGCGGCAAGAAATGGGCGCGGACGTC GGCGCCTCCGCGGGATTCGTCGTCCCGCTCGCCGTGCGCATGCTCCGCGAAGTCGCGAGCCGCATCACGTCGATA TGTGGCAGTGTGCCGGTCGTCGAGACGGAGGGTCAGAGTGCGATTGTTTTTAAGGAGGCGATGGGTGTTATTCTG GGGATTGTGCCGTGGAACGCGCCCTATGTGTTTGGCATTCGCTCTGCGGCTTGTGCCCTCGCAGCTGGCAATACG ACAGTCCTTAAGTCTTCTGAGCTAACTCCCCGCTGCTACTGGGCTATCGGCCGTGCCTTTGAGGATGCTGGCCTT CCCGCTGGCTGTTTGAATATCATTCACTGCGCCCCGCAGGATGCCCCCGAGGTCGTCAATGCCATGATCGAGCAC GAGGCCGTGCGCAAGATAAATTTCACTGGTAGCACAGCTGTTGGTCGGAAGATTGCGCGCGCCTGCGGTCAGAAT CTCAAGCCTTGTCTTATGGAACTGGGCGGGAAGAATAGCTCGATTGTTTGTCGGGATGCTGATTTGCAGACTGCG GTGCAGGGAGTGTTGGCGGGTGCATTCTTGAATTCCGGCCAGATCTGCATGGCAACCGATCGAATCCTCGTCCAC ACTTCCATCCTCCCAGCCTTCACAGAAGCCCTGCAAAAGGCCCTCGCAGCCGGCGCAGCAGCCTCAGCCCTCCCC CCGACGCTCGTCAACACAGCCTCCAAGACCCGCGTCGAAGCCCTCATCGCCAGCGCCGTCTCGGCAGGCGCACAC TTCATCTCCGGGTCTGCGGACAGCGTCCCCACCGACTCGGGAGTGCGGATGGCGCCCGCTGTCCTAGGCGGCGTG ACGGAAGACATGGCGCTGTGGCAGGAGGAGTCGTTCGCGTCCGTTGCGGCGTGTATGCCCTTCGACAGCGAGGAC GAGGCGATCCGTCTCGCGAATGGAAGTGGGTATGGACTCTCGGCGTCTGTGTTCACGGAGGATCTGCGGAGGGGC TTGGCGATGGCTAGACGCATTCAATCTGGGGCGGTCCATATTAATAGCATGACGATCCATGATGAGCCGGCTCTT CCCCATGGCGGTGTGAAGAATAGTGGCTGGGGCCGGTTCAATACTGATGAGGGATTGAATGAGTTCTTGGTTACG AAGAGTGTTACCTGGATGGATTAG |
| Transcript | >Pro_DTO377G3_2|g7910.t1 ATGCCAAACTCAACCAACCCCGGATTCACCGTCCCCCTCCTCATAAACGGCCATGAAGAAACAACCCCCAATACC TTCCCAGTAACAAGCCCCTACACCAACACGACCATCTGGACCGCCTCGGCCGCAACACCCCAAGATGCAATCCGC GCCGTCGAAGCCGCCTCCGCCGCCTTCCCCTCATGGTCGCAGACCAAACCAACCGTGAGACGCGACATCCTCCTC AAAGCCGCCGATCTCCTCGAAGCCCGCCTCGACACGAACGCCGAGTACATGCGGCAAGAAATGGGCGCGGACGTC GGCGCCTCCGCGGGATTCGTCGTCCCGCTCGCCGTGCGCATGCTCCGCGAAGTCGCGAGCCGCATCACGTCGATA TGTGGCAGTGTGCCGGTCGTCGAGACGGAGGGTCAGAGTGCGATTGTTTTTAAGGAGGCGATGGGTGTTATTCTG GGGATTGTGCCGTGGAACGCGCCCTATGTGTTTGGCATTCGCTCTGCGGCTTGTGCCCTCGCAGCTGGCAATACG ACAGTCCTTAAGTCTTCTGAGCTAACTCCCCGCTGCTACTGGGCTATCGGCCGTGCCTTTGAGGATGCTGGCCTT CCCGCTGGCTGTTTGAATATCATTCACTGCGCCCCGCAGGATGCCCCCGAGGTCGTCAATGCCATGATCGAGCAC GAGGCCGTGCGCAAGATAAATTTCACTGGTAGCACAGCTGTTGGTCGGAAGATTGCGCGCGCCTGCGGTCAGAAT CTCAAGCCTTGTCTTATGGAACTGGGCGGGAAGAATAGCTCGATTGTTTGTCGGGATGCTGATTTGCAGACTGCG GTGCAGGGAGTGTTGGCGGGTGCATTCTTGAATTCCGGCCAGATCTGCATGGCAACCGATCGAATCCTCGTCCAC ACTTCCATCCTCCCAGCCTTCACAGAAGCCCTGCAAAAGGCCCTCGCAGCCGGCGCAGCAGCCTCAGCCCTCCCC CCGACGCTCGTCAACACAGCCTCCAAGACCCGCGTCGAAGCCCTCATCGCCAGCGCCGTCTCGGCAGGCGCACAC TTCATCTCCGGGTCTGCGGACAGCGTCCCCACCGACTCGGGAGTGCGGATGGCGCCCGCTGTCCTAGGCGGCGTG ACGGAAGACATGGCGCTGTGGCAGGAGGAGTCGTTCGCGTCCGTTGCGGCGTGTATGCCCTTCGACAGCGAGGAC GAGGCGATCCGTCTCGCGAATGGAAGTGGGTATGGACTCTCGGCGTCTGTGTTCACGGAGGATCTGCGGAGGGGC TTGGCGATGGCTAGACGCATTCAATCTGGGGCGGTCCATATTAATAGCATGACGATCCATGATGAGCCGGCTCTT CCCCATGGCGGTGTGAAGAATAGTGGCTGGGGCCGGTTCAATACTGATGAGGGATTGAATGAGTTCTTGGTTACG AAGAGTGTTACCTGGATGGATTAG |
| Gene | >Pro_DTO377G3_2|g7910.t1 ATGCCAAACTCAACCAACCCCGGATTCACCGTCCCCCTCCTCATAAACGGCCATGAAGAAACAACCCCCAATACC TTCCCAGTAACAAGCCCCTACACCAACACGACCATCTGGACCGCCTCGGCCGCAACACCCCAAGATGCAATCCGC GCCGTCGAAGCCGCCTCCGCCGCCTTCCCCTCATGGTCGCAGACCAAACCAACCGTGAGACGCGACATCCTCCTC AAAGCCGCCGATCTCCTCGAAGCCCGCCTCGACACGAACGCCGAGTACATGCGGCAAGAAATGGGCGCGGACGTC GGCGCCTCCGCGGGATTCGTCGTCCCGCTCGCCGTGCGCATGCTCCGCGAAGTCGCGAGCCGCATCACGTCGATA TGTGGCAGTGTGCCGGTCGTCGAGACGGAGGGTCAGAGTGCGATTGTTTTTAAGGAGGCGATGGGTGTTATTCTG GGGATTGTGCCGTGGTGGGTACTGGTTCCCGAGAACTTTATTTCCTATATCGACCTCGGGTGTGGAAAATGCTAT TGATAGCAGGCTGATTATATTATTGGTTCTACAGGAACGCGCCCTATGTGTTTGGCATTCGCTCTGCGGCTTGTG CCCTCGCAGCTGGCAATACGACAGTCCTTAAGTCTTCTGAGCTAACTCCCCGCTGCTACTGGGCTATCGGCCGTG CCTTTGAGGATGCTGGCCTTCCCGCTGGCTGTTTGAATATCATTCACTGCGCCCCGCAGGATGCCCCCGAGGTCG TCAATGCCATGATCGAGCACGAGGCCGTGCGCAAGATAAATTTCACTGGTAGCACAGCTGTTGGTCGGAAGATTG CGCGCGCCTGCGGTCAGAATCTCAAGCCTTGTCTTATGGAACTGGGCGGGAAGAATAGCTCGATTGTTTGTCGGG ATGCTGATTTGCAGACTGCGGTGCAGGGAGTGTTGGCGGGTGCATTCTTGAATGTGAGTATATGTCGCACGTCGC ATATCTATATCTGTCTCTAACCTATCTCCTTCCGTGTTAGTCCGGCCAGATCTGCATGGCAACCGATCGAATCCT CGTCCACACTTCCATCCTCCCAGCCTTCACAGAAGCCCTGCAAAAGGCCCTCGCAGCCGGCGCAGCAGCCTCAGC CCTCCCCCCGACGCTCGTCAACACAGCCTCCAAGACCCGCGTCGAAGCCCTCATCGCCAGCGCCGTCTCGGCAGG CGCACACTTCATCTCCGGGTCTGCGGACAGCGTCCCCACCGACTCGGGAGTGCGGATGGCGCCCGCTGTCCTAGG CGGCGTGACGGAAGACATGGCGCTGTGGCAGGAGGAGTCGTTCGCGTCCGTTGCGGCGTGTATGCCCTTCGACAG CGAGGACGAGGCGATCCGTCTCGCGAATGGAAGTGGGTATGGACTCTCGGCGTCTGTGTTCACGGAGGATCTGCG GAGGGGCTTGGCGATGGCTAGACGCATTCAATCTGGGTATGTTGGTATTGCAGATCTAGATTCGGATTTTGGTGG ATCTGTGCTGACTTTTGCAGGGCGGTCCATATTAATAGCATGACGATCCATGATGAGCCGGCTCTTCCCCATGGC GGTGTGAAGAATAGTGGCTGGGGCCGGTTCAATACTGATGAGGGATTGAATGAGTTCTTGGTTACGAAGAGTGTT ACCTGGATGGATTAG |