© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g789.t1 |
| Gene name | |
| Location | scaffold_01:2110064..2111255 |
| Strand | - |
| Gene length (bp) | 1191 |
| Transcript length (bp) | 1080 |
| Coding sequence length (bp) | 1080 |
| Protein length (aa) | 360 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 1.0E-02 | 247 | 268 |
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 9.5E-06 | 276 | 299 |
| PF13894 | zf-C2H2_4 | C2H2-type zinc finger | 1.0E-03 | 276 | 299 |
| PF13912 | zf-C2H2_6 | C2H2-type zinc finger | 1.2E-02 | 276 | 299 |
| PF13912 | zf-C2H2_6 | C2H2-type zinc finger | 7.7E-03 | 305 | 323 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| C2H2 zinc finger |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.33 | 0.73 | 5.93 |
| 5d_25C | Five days - 25 degrees Celsius | 2.70 | 0.47 | 4.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.55 | 0.35 | 4.75 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.26 | 0.23 | 4.29 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.52 | 1.22 | 7.81 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.95 | 0.94 | 6.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.733869 | no |
| 3d_25C | 7d_25C | 0.658915 | no |
| 3d_25C | 7d_15C | 0.559488 | no |
| 3d_25C | 7d_30C | 0.775124 | no |
| 3d_25C | 10d_25C | 0.504405 | no |
| 5d_25C | 7d_25C | 0.942001 | no |
| 5d_25C | 7d_15C | 0.291041 | no |
| 5d_25C | 7d_30C | 0.474687 | no |
| 5d_25C | 10d_25C | 0.800409 | no |
| 7d_25C | 7d_15C | 0.232556 | no |
| 7d_25C | 7d_30C | 0.408515 | no |
| 7d_25C | 10d_25C | 0.874490 | no |
| 7d_15C | 7d_30C | 0.820842 | no |
| 7d_15C | 10d_25C | 0.159755 | no |
| 7d_30C | 10d_25C | 0.281796 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g789.t1 MNRNLVQRTSITSPRREEIQSCEASSIYSSPVSTSSQGGVSPIGLGISRCDIDNGFGQLRAFPTSTLPSQLIPGA PNPTFALSYDDFAGACYPSVYDGLVNSASETSLGFYSPTTMSASPSYNSGMEIASGQNVFAGQMTDMWMHTPCSG PTTPSDVVTVPNGAGQWDQSVYSDVCMPSPMPLLSVNDMSYLGAMGEEIGYDGSGINTGQVLQPQASIEGFSDGV TDPSTIERCASNDRLVSASGLECPICGAKFTRRSNCKEHQKLHNPEWRHNHPCDECHKSFGRSSDLKRHMNTVHL GLRKYCCDSCDRRFSRQDSLARHDCAEKQRNTAKFTGHVDPSLTPKQRQRVPNHRRSAS* |
| Coding | >Pro_DTO377G3_2|g789.t1 ATGAATCGGAATTTAGTTCAGCGCACCTCAATTACATCCCCGCGAAGAGAGGAGATACAGTCTTGCGAAGCATCC TCAATATACTCGTCTCCTGTTTCGACCTCGTCCCAGGGAGGTGTTTCCCCTATTGGTCTGGGAATTTCCCGCTGC GACATCGACAATGGATTCGGTCAACTGAGGGCCTTCCCTACGTCGACACTGCCATCGCAACTGATTCCTGGAGCG CCAAATCCCACCTTCGCATTATCCTATGACGACTTTGCCGGAGCATGCTATCCATCAGTTTACGATGGACTCGTC AACAGTGCTTCAGAGACTTCACTGGGGTTCTACAGCCCCACGACGATGAGCGCGTCTCCCAGCTACAACTCTGGC ATGGAGATTGCCTCTGGCCAGAATGTCTTCGCGGGCCAAATGACCGATATGTGGATGCACACACCTTGCTCGGGA CCGACAACGCCATCGGATGTGGTCACTGTACCGAACGGCGCAGGACAATGGGACCAGAGTGTGTATTCGGACGTG TGTATGCCCTCTCCGATGCCCCTATTATCCGTCAACGACATGTCCTACCTTGGGGCGATGGGAGAGGAGATTGGA TACGATGGATCTGGAATCAACACTGGTCAAGTCTTGCAACCCCAAGCATCTATCGAAGGATTCTCCGATGGTGTC ACGGACCCGAGTACAATAGAGCGCTGCGCGTCAAATGACAGGCTAGTATCTGCCAGTGGCCTGGAATGTCCAATT TGTGGCGCAAAATTCACGCGACGCTCCAACTGCAAGGAGCACCAAAAGCTGCACAACCCTGAATGGAGGCACAAC CATCCTTGCGATGAGTGCCACAAGTCTTTTGGCCGGAGCTCGGATCTCAAACGACACATGAACACCGTTCATCTC GGGCTTCGGAAGTACTGCTGTGACTCTTGCGACCGGCGTTTCAGTCGTCAGGATAGTCTAGCCAGACATGATTGT GCGGAGAAGCAGCGCAACACTGCGAAGTTTACCGGCCACGTTGATCCTTCGCTCACGCCCAAGCAACGCCAACGA GTGCCGAATCACCGCCGCTCAGCTAGCTAG |
| Transcript | >Pro_DTO377G3_2|g789.t1 ATGAATCGGAATTTAGTTCAGCGCACCTCAATTACATCCCCGCGAAGAGAGGAGATACAGTCTTGCGAAGCATCC TCAATATACTCGTCTCCTGTTTCGACCTCGTCCCAGGGAGGTGTTTCCCCTATTGGTCTGGGAATTTCCCGCTGC GACATCGACAATGGATTCGGTCAACTGAGGGCCTTCCCTACGTCGACACTGCCATCGCAACTGATTCCTGGAGCG CCAAATCCCACCTTCGCATTATCCTATGACGACTTTGCCGGAGCATGCTATCCATCAGTTTACGATGGACTCGTC AACAGTGCTTCAGAGACTTCACTGGGGTTCTACAGCCCCACGACGATGAGCGCGTCTCCCAGCTACAACTCTGGC ATGGAGATTGCCTCTGGCCAGAATGTCTTCGCGGGCCAAATGACCGATATGTGGATGCACACACCTTGCTCGGGA CCGACAACGCCATCGGATGTGGTCACTGTACCGAACGGCGCAGGACAATGGGACCAGAGTGTGTATTCGGACGTG TGTATGCCCTCTCCGATGCCCCTATTATCCGTCAACGACATGTCCTACCTTGGGGCGATGGGAGAGGAGATTGGA TACGATGGATCTGGAATCAACACTGGTCAAGTCTTGCAACCCCAAGCATCTATCGAAGGATTCTCCGATGGTGTC ACGGACCCGAGTACAATAGAGCGCTGCGCGTCAAATGACAGGCTAGTATCTGCCAGTGGCCTGGAATGTCCAATT TGTGGCGCAAAATTCACGCGACGCTCCAACTGCAAGGAGCACCAAAAGCTGCACAACCCTGAATGGAGGCACAAC CATCCTTGCGATGAGTGCCACAAGTCTTTTGGCCGGAGCTCGGATCTCAAACGACACATGAACACCGTTCATCTC GGGCTTCGGAAGTACTGCTGTGACTCTTGCGACCGGCGTTTCAGTCGTCAGGATAGTCTAGCCAGACATGATTGT GCGGAGAAGCAGCGCAACACTGCGAAGTTTACCGGCCACGTTGATCCTTCGCTCACGCCCAAGCAACGCCAACGA GTGCCGAATCACCGCCGCTCAGCTAGCTAG |
| Gene | >Pro_DTO377G3_2|g789.t1 ATGAATCGGAATTTAGTTCAGCGCACCTCAATTACATCCCCGCGAAGAGAGGAGATACAGTCTTGCGAAGCATCC TCAATATACTCGTCTCCTGTTTCGACCTCGTCCCAGGGAGGTGTTTCCCCTATTGGTCTGGGAATTTCCCGCTGC GACATCGACAATGGATTCGGTCAACTGAGGGCCTTCCCTACGTCGACACTGCCATCGCAACTGATTCCTGGAGCG CCAAATCCCACCTTCGCATTATCCTATGACGACTTTGCCGGAGCATGCTATCCATCAGTTTACGATGGACTCGTC AACAGTGCTTCAGAGACTTCACTGGGGTTCTACAGCCCCACGACGATGAGCGCGTCTCCCAGCTACAACTCTGGC ATGGAGATTGCCTCTGGCCAGAATGTCTTCGCGGGCCAAATGACCGATATGTGGATGCACACACCTTGCTCGGGA CCGACAACGCCATCGGATGTGGTCACTGTACCGAACGGCGCAGGACAATGGGACCAGAGTGTGTATTCGGACGTG TGTATGCCCTCTCCGATGCCCCTATTATCCGTCAACGACATGTCCTACCTTGGGGCGATGGGAGAGGAGATTGGA TACGATGGATCTGGAATCAACACTGGTCAAGTCTTGCAACCCCAAGCATCTATCGAAGGATTCTCCGATGGTGTC ACGGACCCGAGTACAATAGAGCGCTGCGCGTCAAATGACAGGCTAGTATCTGCCAGTGGCCTGGAATGTCCAATT TGTGGCGCAAAATTCACGCGACGCTCCAACTGCAAGGAGCACCAAAAGCTGCACAACCCTGAATGGAGGCACAAC CATCCTTGCGATGAGTGCCACAAGTCTTTTGGCCGGAGCTCGGATCTCAAACGACACATGAACACCGTGAGTAGG GAGGCCAGACGGAATCAAGCATAGACACTAACAAGGTCTCTAGGTTCATCTCGGGCTTCGGAAGTACTGCTGTGA CTCTTGCGACCGGCGTTTCAGTCGTCAGGATAGTCTAGCCAGGTAAGAACCCAGAATATTTATCCTTGAATGTGT ACTCGTGGGACTAATATGAGCAATAGACATGATTGTGCGGAGAAGCAGCGCAACACTGCGAAGTTTACCGGCCAC GTTGATCCTTCGCTCACGCCCAAGCAACGCCAACGAGTGCCGAATCACCGCCGCTCAGCTAGCTAG |