Protein ID | Pro_DTO377G3_2|g789.t1 |
Gene name | |
Location | scaffold_01:2110064..2111255 |
Strand | - |
Gene length (bp) | 1191 |
Transcript length (bp) | 1080 |
Coding sequence length (bp) | 1080 |
Protein length (aa) | 360 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 1.0E-02 | 247 | 268 |
PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 9.5E-06 | 276 | 299 |
PF13894 | zf-C2H2_4 | C2H2-type zinc finger | 1.0E-03 | 276 | 299 |
PF13912 | zf-C2H2_6 | C2H2-type zinc finger | 1.2E-02 | 276 | 299 |
PF13912 | zf-C2H2_6 | C2H2-type zinc finger | 7.7E-03 | 305 | 323 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 51 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
C2H2 zinc finger |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g789.t1 MNRNLVQRTSITSPRREEIQSCEASSIYSSPVSTSSQGGVSPIGLGISRCDIDNGFGQLRAFPTSTLPSQLIPGA PNPTFALSYDDFAGACYPSVYDGLVNSASETSLGFYSPTTMSASPSYNSGMEIASGQNVFAGQMTDMWMHTPCSG PTTPSDVVTVPNGAGQWDQSVYSDVCMPSPMPLLSVNDMSYLGAMGEEIGYDGSGINTGQVLQPQASIEGFSDGV TDPSTIERCASNDRLVSASGLECPICGAKFTRRSNCKEHQKLHNPEWRHNHPCDECHKSFGRSSDLKRHMNTVHL GLRKYCCDSCDRRFSRQDSLARHDCAEKQRNTAKFTGHVDPSLTPKQRQRVPNHRRSAS* |
Coding | >Pro_DTO377G3_2|g789.t1 ATGAATCGGAATTTAGTTCAGCGCACCTCAATTACATCCCCGCGAAGAGAGGAGATACAGTCTTGCGAAGCATCC TCAATATACTCGTCTCCTGTTTCGACCTCGTCCCAGGGAGGTGTTTCCCCTATTGGTCTGGGAATTTCCCGCTGC GACATCGACAATGGATTCGGTCAACTGAGGGCCTTCCCTACGTCGACACTGCCATCGCAACTGATTCCTGGAGCG CCAAATCCCACCTTCGCATTATCCTATGACGACTTTGCCGGAGCATGCTATCCATCAGTTTACGATGGACTCGTC AACAGTGCTTCAGAGACTTCACTGGGGTTCTACAGCCCCACGACGATGAGCGCGTCTCCCAGCTACAACTCTGGC ATGGAGATTGCCTCTGGCCAGAATGTCTTCGCGGGCCAAATGACCGATATGTGGATGCACACACCTTGCTCGGGA CCGACAACGCCATCGGATGTGGTCACTGTACCGAACGGCGCAGGACAATGGGACCAGAGTGTGTATTCGGACGTG TGTATGCCCTCTCCGATGCCCCTATTATCCGTCAACGACATGTCCTACCTTGGGGCGATGGGAGAGGAGATTGGA TACGATGGATCTGGAATCAACACTGGTCAAGTCTTGCAACCCCAAGCATCTATCGAAGGATTCTCCGATGGTGTC ACGGACCCGAGTACAATAGAGCGCTGCGCGTCAAATGACAGGCTAGTATCTGCCAGTGGCCTGGAATGTCCAATT TGTGGCGCAAAATTCACGCGACGCTCCAACTGCAAGGAGCACCAAAAGCTGCACAACCCTGAATGGAGGCACAAC CATCCTTGCGATGAGTGCCACAAGTCTTTTGGCCGGAGCTCGGATCTCAAACGACACATGAACACCGTTCATCTC GGGCTTCGGAAGTACTGCTGTGACTCTTGCGACCGGCGTTTCAGTCGTCAGGATAGTCTAGCCAGACATGATTGT GCGGAGAAGCAGCGCAACACTGCGAAGTTTACCGGCCACGTTGATCCTTCGCTCACGCCCAAGCAACGCCAACGA GTGCCGAATCACCGCCGCTCAGCTAGCTAG |
Transcript | >Pro_DTO377G3_2|g789.t1 ATGAATCGGAATTTAGTTCAGCGCACCTCAATTACATCCCCGCGAAGAGAGGAGATACAGTCTTGCGAAGCATCC TCAATATACTCGTCTCCTGTTTCGACCTCGTCCCAGGGAGGTGTTTCCCCTATTGGTCTGGGAATTTCCCGCTGC GACATCGACAATGGATTCGGTCAACTGAGGGCCTTCCCTACGTCGACACTGCCATCGCAACTGATTCCTGGAGCG CCAAATCCCACCTTCGCATTATCCTATGACGACTTTGCCGGAGCATGCTATCCATCAGTTTACGATGGACTCGTC AACAGTGCTTCAGAGACTTCACTGGGGTTCTACAGCCCCACGACGATGAGCGCGTCTCCCAGCTACAACTCTGGC ATGGAGATTGCCTCTGGCCAGAATGTCTTCGCGGGCCAAATGACCGATATGTGGATGCACACACCTTGCTCGGGA CCGACAACGCCATCGGATGTGGTCACTGTACCGAACGGCGCAGGACAATGGGACCAGAGTGTGTATTCGGACGTG TGTATGCCCTCTCCGATGCCCCTATTATCCGTCAACGACATGTCCTACCTTGGGGCGATGGGAGAGGAGATTGGA TACGATGGATCTGGAATCAACACTGGTCAAGTCTTGCAACCCCAAGCATCTATCGAAGGATTCTCCGATGGTGTC ACGGACCCGAGTACAATAGAGCGCTGCGCGTCAAATGACAGGCTAGTATCTGCCAGTGGCCTGGAATGTCCAATT TGTGGCGCAAAATTCACGCGACGCTCCAACTGCAAGGAGCACCAAAAGCTGCACAACCCTGAATGGAGGCACAAC CATCCTTGCGATGAGTGCCACAAGTCTTTTGGCCGGAGCTCGGATCTCAAACGACACATGAACACCGTTCATCTC GGGCTTCGGAAGTACTGCTGTGACTCTTGCGACCGGCGTTTCAGTCGTCAGGATAGTCTAGCCAGACATGATTGT GCGGAGAAGCAGCGCAACACTGCGAAGTTTACCGGCCACGTTGATCCTTCGCTCACGCCCAAGCAACGCCAACGA GTGCCGAATCACCGCCGCTCAGCTAGCTAG |
Gene | >Pro_DTO377G3_2|g789.t1 ATGAATCGGAATTTAGTTCAGCGCACCTCAATTACATCCCCGCGAAGAGAGGAGATACAGTCTTGCGAAGCATCC TCAATATACTCGTCTCCTGTTTCGACCTCGTCCCAGGGAGGTGTTTCCCCTATTGGTCTGGGAATTTCCCGCTGC GACATCGACAATGGATTCGGTCAACTGAGGGCCTTCCCTACGTCGACACTGCCATCGCAACTGATTCCTGGAGCG CCAAATCCCACCTTCGCATTATCCTATGACGACTTTGCCGGAGCATGCTATCCATCAGTTTACGATGGACTCGTC AACAGTGCTTCAGAGACTTCACTGGGGTTCTACAGCCCCACGACGATGAGCGCGTCTCCCAGCTACAACTCTGGC ATGGAGATTGCCTCTGGCCAGAATGTCTTCGCGGGCCAAATGACCGATATGTGGATGCACACACCTTGCTCGGGA CCGACAACGCCATCGGATGTGGTCACTGTACCGAACGGCGCAGGACAATGGGACCAGAGTGTGTATTCGGACGTG TGTATGCCCTCTCCGATGCCCCTATTATCCGTCAACGACATGTCCTACCTTGGGGCGATGGGAGAGGAGATTGGA TACGATGGATCTGGAATCAACACTGGTCAAGTCTTGCAACCCCAAGCATCTATCGAAGGATTCTCCGATGGTGTC ACGGACCCGAGTACAATAGAGCGCTGCGCGTCAAATGACAGGCTAGTATCTGCCAGTGGCCTGGAATGTCCAATT TGTGGCGCAAAATTCACGCGACGCTCCAACTGCAAGGAGCACCAAAAGCTGCACAACCCTGAATGGAGGCACAAC CATCCTTGCGATGAGTGCCACAAGTCTTTTGGCCGGAGCTCGGATCTCAAACGACACATGAACACCGTGAGTAGG GAGGCCAGACGGAATCAAGCATAGACACTAACAAGGTCTCTAGGTTCATCTCGGGCTTCGGAAGTACTGCTGTGA CTCTTGCGACCGGCGTTTCAGTCGTCAGGATAGTCTAGCCAGGTAAGAACCCAGAATATTTATCCTTGAATGTGT ACTCGTGGGACTAATATGAGCAATAGACATGATTGTGCGGAGAAGCAGCGCAACACTGCGAAGTTTACCGGCCAC GTTGATCCTTCGCTCACGCCCAAGCAACGCCAACGAGTGCCGAATCACCGCCGCTCAGCTAGCTAG |