© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7888.t1 |
| Gene name | |
| Location | scaffold_27:70145..71182 |
| Strand | + |
| Gene length (bp) | 1037 |
| Transcript length (bp) | 804 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01956 | EMC3_TMCO1 | Integral membrane protein EMC3/TMCO1-like | 8.3E-54 | 10 | 204 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 136 | 158 | 22 |
| 3 | 178 | 200 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7888.t1 MAIQGADQTILRDPALFYWILFPISIVMILTGILRHYATVLMNTTPKAPSTLAESRERLALLRGVNLRNNACSVL DRESFEMRKNYMVTGFRNGAFLKDPNNRGQPPANPMTDPAGMEAMMGMLKGNMMMMIPQTLIMSWINAFFSGFVI LKLPFPLTIRFKSMLQSGVMTRDLDVQWVSSLSWYFLNLMGLQSVFGFILGSDNAANQMAQQMGMANPAAMVNPL QPGQDPDKLYLNEAENLEVMEHFCILDGVEERILQNFAPAGI* |
| Coding | >Pro_DTO377G3_2|g7888.t1 ATGGCAATTCAAGGGGCTGATCAGACCATCCTTAGGGATCCGGCATTATTCTATTGGATTCTATTTCCCATTTCA ATTGTTATGATACTGACTGGAATCCTTCGCCACTATGCTACGGTCCTCATGAACACGACCCCAAAGGCGCCATCC ACTCTTGCCGAGTCTCGCGAGCGCCTTGCTCTTCTCCGCGGTGTGAATCTCCGCAACAATGCCTGCTCCGTGCTC GACCGCGAGTCCTTTGAGATGCGCAAGAACTACATGGTTACTGGATTCCGCAATGGCGCATTTCTCAAGGATCCC AATAATCGCGGCCAACCGCCCGCGAACCCCATGACTGATCCTGCGGGCATGGAAGCTATGATGGGAATGCTTAAG GGAAACATGATGATGATGATCCCGCAAACCCTGATCATGAGTTGGATCAATGCCTTCTTTTCTGGCTTTGTCATC TTGAAATTGCCCTTCCCGCTTACTATCCGGTTCAAGTCGATGCTGCAGTCTGGTGTCATGACTCGCGACCTCGAT GTGCAATGGGTCTCCAGTCTTTCATGGTACTTCCTCAACTTGATGGGCCTTCAGTCCGTTTTTGGATTCATCCTC GGCAGTGATAACGCTGCCAATCAAATGGCCCAGCAGATGGGTATGGCTAACCCTGCCGCAATGGTCAACCCGCTC CAGCCCGGCCAGGATCCCGACAAGTTGTATCTGAACGAAGCGGAGAACCTGGAGGTGATGGAGCACTTCTGCATT CTCGATGGAGTGGAAGAGAGAATCTTGCAAAATTTTGCTCCCGCAGGGATCTAA |
| Transcript | >Pro_DTO377G3_2|g7888.t1 ATGGCAATTCAAGGGGCTGATCAGACCATCCTTAGGGATCCGGCATTATTCTATTGGATTCTATTTCCCATTTCA ATTGTTATGATACTGACTGGAATCCTTCGCCACTATGCTACGGTCCTCATGAACACGACCCCAAAGGCGCCATCC ACTCTTGCCGAGTCTCGCGAGCGCCTTGCTCTTCTCCGCGGTGTGAATCTCCGCAACAATGCCTGCTCCGTGCTC GACCGCGAGTCCTTTGAGATGCGCAAGAACTACATGGTTACTGGATTCCGCAATGGCGCATTTCTCAAGGATCCC AATAATCGCGGCCAACCGCCCGCGAACCCCATGACTGATCCTGCGGGCATGGAAGCTATGATGGGAATGCTTAAG GGAAACATGATGATGATGATCCCGCAAACCCTGATCATGAGTTGGATCAATGCCTTCTTTTCTGGCTTTGTCATC TTGAAATTGCCCTTCCCGCTTACTATCCGGTTCAAGTCGATGCTGCAGTCTGGTGTCATGACTCGCGACCTCGAT GTGCAATGGGTCTCCAGTCTTTCATGGTACTTCCTCAACTTGATGGGCCTTCAGTCCGTTTTTGGATTCATCCTC GGCAGTGATAACGCTGCCAATCAAATGGCCCAGCAGATGGGTATGGCTAACCCTGCCGCAATGGTCAACCCGCTC CAGCCCGGCCAGGATCCCGACAAGTTGTATCTGAACGAAGCGGAGAACCTGGAGGTGATGGAGCACTTCTGCATT CTCGATGGAGTGGAAGAGAGAATCTTGCAAAATTTTGCTCCCGCAGGGATCTAA |
| Gene | >Pro_DTO377G3_2|g7888.t1 ATGGCAATTCAAGGGGCTGATCAGACCATCCTTAGGGATCCGGCATTATTGTGAGAGAACATGATTCGATCAAGC GGAAGTTGGACTGACCATTTGCTTATAGCTATTGGATTCTATTTCCCATTTCAATTGTTATGGTATGACCTGCAC TCGGTGCTTGAAGCTAAATATTCGCGATGCCTCTGAGACTGAAACTAACCTCTCTTATTGGATAGATACTGACTG GAATCCTTCGCCACTATGCTACGGTCCTCATGAACACGACCCCAAAGGCGCCATCCACTCTTGCCGAGTCTCGCG AGCGCCTTGCTCTTCTCCGCGGTGTGAATCTCCGCAACAATGCCTGCTCCGTGCTCGACCGCGAGTCCTTTGAGA TGCGCAAGAACTACATGGTTACTGGATTCCGCAATGGCGCATTTCTCAAGGATCCCAATAATCGCGGCCAACCGC CCGCGAACCCCATGACTGATCCTGCGGGCATGGAAGCTATGATGGGAATGCTTAAGGGAAACATGATGATGATGA TCCCGCAAACCCTGATCATGAGTTGGATCAATGCCTTCTTTTCTGGCTTTGTCATCTGTATGTTGCAATTTGATA TAAAACATGAGCAACGAGCTTACAAATTCTGAAGTGAAATTGCCCTTCCCGCTTACTATCCGGTTCAAGTCGATG CTGCAGTCTGGTGTCATGACTCGCGACCTCGATGTGCAATGGGTCTCCAGTCTTTCATGGTACTTCCTCAACTTG ATGGGCCTTCAGTCCGTTTTTGGATTCATCCTCGGCAGTGATAACGGTATGCATCAATCTGACCTTCCCAATAAG AGTTCTCACTAATATTTATAGCTGCCAATCAAATGGCCCAGCAGATGGGTATGGCTAACCCTGCCGCAATGGTCA ACCCGCTCCAGCCCGGCCAGGATCCCGACAAGTTGTATCTGAACGAAGCGGAGAACCTGGAGGTGATGGAGCACT TCTGCATTCTCGATGGAGTGGAAGAGAGAATCTTGCAAAATTTTGCTCCCGCAGGGATCTAA |