© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g7887.t1 |
| Gene name | |
| Location | scaffold_27:69194..69880 |
| Strand | - |
| Gene length (bp) | 686 |
| Transcript length (bp) | 564 |
| Coding sequence length (bp) | 564 |
| Protein length (aa) | 188 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06703 | SPC25 | Microsomal signal peptidase 25 kDa subunit (SPC25) | 1.5E-49 | 13 | 172 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005787 | signal peptidase complex | Yes |
| GO:0006465 | signal peptide processing | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0032991 | protein-containing complex | No |
| GO:0016485 | protein processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0051604 | protein maturation | No |
| GO:0019538 | protein metabolic process | No |
| GO:1905368 | peptidase complex | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0008152 | metabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0098796 | membrane protein complex | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 43 | 60 | 17 |
| 2 | 75 | 97 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 58.57 | 28.49 | 88.65 |
| 5d_25C | Five days - 25 degrees Celsius | 41.63 | 18.21 | 65.04 |
| 7d_25C | Seven days - 25 degrees Celsius | 42.94 | 18.79 | 67.09 |
| 10d_25C | Ten days - 25 degrees Celsius | 37.79 | 16.03 | 59.54 |
| 7d_15C | Seven days - 15 degrees Celsius | 39.14 | 15.15 | 63.13 |
| 7d_30C | Seven days - 30 degrees Celsius | 59.22 | 28.09 | 90.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.291547 | no |
| 3d_25C | 7d_25C | 0.351618 | no |
| 3d_25C | 7d_15C | 0.217619 | no |
| 3d_25C | 7d_30C | 0.982351 | no |
| 3d_25C | 10d_25C | 0.166610 | no |
| 5d_25C | 7d_25C | 0.949724 | no |
| 5d_25C | 7d_15C | 0.899433 | no |
| 5d_25C | 7d_30C | 0.279368 | no |
| 5d_25C | 10d_25C | 0.832271 | no |
| 7d_25C | 7d_15C | 0.836545 | no |
| 7d_25C | 7d_30C | 0.338503 | no |
| 7d_25C | 10d_25C | 0.760822 | no |
| 7d_15C | 7d_30C | 0.206957 | no |
| 7d_15C | 10d_25C | 0.945643 | no |
| 7d_30C | 10d_25C | 0.159868 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7887.t1 MASSKVPVYSTNDLKSTSDDALLPYLTNLPAPYAFTPDYSKTNIRFLLGYSAVAIAGFTFYADRRLGWEATTSPW IIAAVGTYFFLNAILTYWIWAVEAGEVYSGKRKTGETISVSSSTKKFSKLYKLHVIYKSASGKVLQDKRCEAPFT TWFSVDGVFHPEPFRRWVASEIDVLRLAAKENEKKFG* |
| Coding | >Pro_DTO377G3_2|g7887.t1 ATGGCTTCCAGCAAGGTGCCGGTCTACTCGACCAATGATCTCAAATCTACGAGCGACGATGCTCTGCTTCCTTAT CTCACCAACCTTCCCGCGCCATACGCTTTTACACCGGACTACTCGAAGACGAACATTCGCTTCTTGCTTGGATAT AGTGCTGTCGCAATTGCAGGGTTTACTTTCTATGCAGACCGCAGGCTTGGCTGGGAAGCAACTACCTCGCCCTGG ATTATCGCGGCAGTAGGGACATACTTCTTCTTGAACGCCATTCTCACATACTGGATTTGGGCCGTCGAGGCTGGC GAGGTATATTCCGGGAAGAGGAAGACTGGGGAGACGATATCTGTGTCATCGTCAACCAAAAAGTTCTCCAAGCTC TACAAGTTGCATGTCATTTATAAGTCCGCCTCTGGCAAGGTTCTCCAGGACAAGCGGTGTGAGGCGCCCTTCACA ACTTGGTTCTCGGTAGATGGTGTATTCCACCCAGAGCCTTTCCGTCGCTGGGTTGCCAGCGAGATTGATGTTTTG AGATTGGCAGCGAAGGAAAATGAGAAGAAGTTTGGCTAG |
| Transcript | >Pro_DTO377G3_2|g7887.t1 ATGGCTTCCAGCAAGGTGCCGGTCTACTCGACCAATGATCTCAAATCTACGAGCGACGATGCTCTGCTTCCTTAT CTCACCAACCTTCCCGCGCCATACGCTTTTACACCGGACTACTCGAAGACGAACATTCGCTTCTTGCTTGGATAT AGTGCTGTCGCAATTGCAGGGTTTACTTTCTATGCAGACCGCAGGCTTGGCTGGGAAGCAACTACCTCGCCCTGG ATTATCGCGGCAGTAGGGACATACTTCTTCTTGAACGCCATTCTCACATACTGGATTTGGGCCGTCGAGGCTGGC GAGGTATATTCCGGGAAGAGGAAGACTGGGGAGACGATATCTGTGTCATCGTCAACCAAAAAGTTCTCCAAGCTC TACAAGTTGCATGTCATTTATAAGTCCGCCTCTGGCAAGGTTCTCCAGGACAAGCGGTGTGAGGCGCCCTTCACA ACTTGGTTCTCGGTAGATGGTGTATTCCACCCAGAGCCTTTCCGTCGCTGGGTTGCCAGCGAGATTGATGTTTTG AGATTGGCAGCGAAGGAAAATGAGAAGAAGTTTGGCTAG |
| Gene | >Pro_DTO377G3_2|g7887.t1 ATGGCTTCCAGCAAGGTGCCGGTCTACTCGACCAATGGTACGTAATCCCGCTATACTCTATACAGCAACAACACT AACGGCGTGAGCAACAGATCTCAAATCTACGAGCGACGATGCTCTGCTTCCTTATCTCACCAACCTTCCCGCGCC ATACGCTTTTACACCGGACTACTCGAAGACGAACATTCGCTTCTTGCTTGGATATAGTGCTGTCGCAATTGCAGG GTTTACTTTCTATGCAGACCGCAGGCTTGGCTGGGAAGCAACTACCTCGCCCTGGATTATCGCGGCAGTAGGGAC ATACTTCTTCTTGAACGCCATTCTCACATACTGGATTTGGGCCGTCGAGGCTGGCGAGGTATATTCCGGGAAGAG GAAGACTGGGGAGACGGTATGTCAATTAGTCTTCGTTCTGATATTCTTTTTTTGGCCAGGTAACTAACAGGACTT GTTTATAGATATCTGTGTCATCGTCAACCAAAAAGTTCTCCAAGCTCTACAAGTTGCATGTCATTTATAAGTCCG CCTCTGGCAAGGTTCTCCAGGACAAGCGGTGTGAGGCGCCCTTCACAACTTGGTTCTCGGTAGATGGTGTATTCC ACCCAGAGCCTTTCCGTCGCTGGGTTGCCAGCGAGATTGATGTTTTGAGATTGGCAGCGAAGGAAAATGAGAAGA AGTTTGGCTAG |