Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7887.t1
Gene name
Locationscaffold_27:69194..69880
Strand-
Gene length (bp)686
Transcript length (bp)564
Coding sequence length (bp)564
Protein length (aa) 188

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06703 SPC25 Microsomal signal peptidase 25 kDa subunit (SPC25) 1.5E-49 13 172

GO

GO Term Description Terminal node
GO:0005787 signal peptidase complex Yes
GO:0006465 signal peptide processing Yes
GO:0016021 integral component of membrane Yes
GO:0032991 protein-containing complex No
GO:0016485 protein processing No
GO:0043170 macromolecule metabolic process No
GO:0006518 peptide metabolic process No
GO:0043603 cellular amide metabolic process No
GO:0051604 protein maturation No
GO:0019538 protein metabolic process No
GO:1905368 peptidase complex No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No
GO:0005575 cellular_component No
GO:0008152 metabolic process No
GO:1902494 catalytic complex No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0140534 endoplasmic reticulum protein-containing complex No
GO:0006807 nitrogen compound metabolic process No
GO:0006508 proteolysis No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:0098796 membrane protein complex No
GO:0044237 cellular metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0009987 cellular process No
GO:0044238 primary metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 35 0.5

Transmembrane Domains

Domain # Start End Length
1 43 60 17
2 75 97 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 58.57 28.49 88.65
5d_25C Five days - 25 degrees Celsius 41.63 18.21 65.04
7d_25C Seven days - 25 degrees Celsius 42.94 18.79 67.09
10d_25C Ten days - 25 degrees Celsius 37.79 16.03 59.54
7d_15C Seven days - 15 degrees Celsius 39.14 15.15 63.13
7d_30C Seven days - 30 degrees Celsius 59.22 28.09 90.36

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.291547 no
3d_25C 7d_25C 0.351618 no
3d_25C 7d_15C 0.217619 no
3d_25C 7d_30C 0.982351 no
3d_25C 10d_25C 0.166610 no
5d_25C 7d_25C 0.949724 no
5d_25C 7d_15C 0.899433 no
5d_25C 7d_30C 0.279368 no
5d_25C 10d_25C 0.832271 no
7d_25C 7d_15C 0.836545 no
7d_25C 7d_30C 0.338503 no
7d_25C 10d_25C 0.760822 no
7d_15C 7d_30C 0.206957 no
7d_15C 10d_25C 0.945643 no
7d_30C 10d_25C 0.159868 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7887.t1
MASSKVPVYSTNDLKSTSDDALLPYLTNLPAPYAFTPDYSKTNIRFLLGYSAVAIAGFTFYADRRLGWEATTSPW
IIAAVGTYFFLNAILTYWIWAVEAGEVYSGKRKTGETISVSSSTKKFSKLYKLHVIYKSASGKVLQDKRCEAPFT
TWFSVDGVFHPEPFRRWVASEIDVLRLAAKENEKKFG*
Coding >Pro_DTO377G3_2|g7887.t1
ATGGCTTCCAGCAAGGTGCCGGTCTACTCGACCAATGATCTCAAATCTACGAGCGACGATGCTCTGCTTCCTTAT
CTCACCAACCTTCCCGCGCCATACGCTTTTACACCGGACTACTCGAAGACGAACATTCGCTTCTTGCTTGGATAT
AGTGCTGTCGCAATTGCAGGGTTTACTTTCTATGCAGACCGCAGGCTTGGCTGGGAAGCAACTACCTCGCCCTGG
ATTATCGCGGCAGTAGGGACATACTTCTTCTTGAACGCCATTCTCACATACTGGATTTGGGCCGTCGAGGCTGGC
GAGGTATATTCCGGGAAGAGGAAGACTGGGGAGACGATATCTGTGTCATCGTCAACCAAAAAGTTCTCCAAGCTC
TACAAGTTGCATGTCATTTATAAGTCCGCCTCTGGCAAGGTTCTCCAGGACAAGCGGTGTGAGGCGCCCTTCACA
ACTTGGTTCTCGGTAGATGGTGTATTCCACCCAGAGCCTTTCCGTCGCTGGGTTGCCAGCGAGATTGATGTTTTG
AGATTGGCAGCGAAGGAAAATGAGAAGAAGTTTGGCTAG
Transcript >Pro_DTO377G3_2|g7887.t1
ATGGCTTCCAGCAAGGTGCCGGTCTACTCGACCAATGATCTCAAATCTACGAGCGACGATGCTCTGCTTCCTTAT
CTCACCAACCTTCCCGCGCCATACGCTTTTACACCGGACTACTCGAAGACGAACATTCGCTTCTTGCTTGGATAT
AGTGCTGTCGCAATTGCAGGGTTTACTTTCTATGCAGACCGCAGGCTTGGCTGGGAAGCAACTACCTCGCCCTGG
ATTATCGCGGCAGTAGGGACATACTTCTTCTTGAACGCCATTCTCACATACTGGATTTGGGCCGTCGAGGCTGGC
GAGGTATATTCCGGGAAGAGGAAGACTGGGGAGACGATATCTGTGTCATCGTCAACCAAAAAGTTCTCCAAGCTC
TACAAGTTGCATGTCATTTATAAGTCCGCCTCTGGCAAGGTTCTCCAGGACAAGCGGTGTGAGGCGCCCTTCACA
ACTTGGTTCTCGGTAGATGGTGTATTCCACCCAGAGCCTTTCCGTCGCTGGGTTGCCAGCGAGATTGATGTTTTG
AGATTGGCAGCGAAGGAAAATGAGAAGAAGTTTGGCTAG
Gene >Pro_DTO377G3_2|g7887.t1
ATGGCTTCCAGCAAGGTGCCGGTCTACTCGACCAATGGTACGTAATCCCGCTATACTCTATACAGCAACAACACT
AACGGCGTGAGCAACAGATCTCAAATCTACGAGCGACGATGCTCTGCTTCCTTATCTCACCAACCTTCCCGCGCC
ATACGCTTTTACACCGGACTACTCGAAGACGAACATTCGCTTCTTGCTTGGATATAGTGCTGTCGCAATTGCAGG
GTTTACTTTCTATGCAGACCGCAGGCTTGGCTGGGAAGCAACTACCTCGCCCTGGATTATCGCGGCAGTAGGGAC
ATACTTCTTCTTGAACGCCATTCTCACATACTGGATTTGGGCCGTCGAGGCTGGCGAGGTATATTCCGGGAAGAG
GAAGACTGGGGAGACGGTATGTCAATTAGTCTTCGTTCTGATATTCTTTTTTTGGCCAGGTAACTAACAGGACTT
GTTTATAGATATCTGTGTCATCGTCAACCAAAAAGTTCTCCAAGCTCTACAAGTTGCATGTCATTTATAAGTCCG
CCTCTGGCAAGGTTCTCCAGGACAAGCGGTGTGAGGCGCCCTTCACAACTTGGTTCTCGGTAGATGGTGTATTCC
ACCCAGAGCCTTTCCGTCGCTGGGTTGCCAGCGAGATTGATGTTTTGAGATTGGCAGCGAAGGAAAATGAGAAGA
AGTTTGGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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