© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g787.t1 |
| Gene name | |
| Location | scaffold_01:2102933..2104618 |
| Strand | + |
| Gene length (bp) | 1685 |
| Transcript length (bp) | 1464 |
| Coding sequence length (bp) | 1464 |
| Protein length (aa) | 488 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00743 | FMO-like | Flavin-binding monooxygenase-like | 1.4E-21 | 88 | 256 |
| PF00743 | FMO-like | Flavin-binding monooxygenase-like | 9.9E-06 | 296 | 433 |
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 6.5E-16 | 6 | 355 |
| PF13738 | Pyr_redox_3 | Pyridine nucleotide-disulphide oxidoreductase | 2.5E-11 | 168 | 327 |
| PF13454 | NAD_binding_9 | FAD-NAD(P)-binding | 1.2E-07 | 8 | 184 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 1.5E-06 | 9 | 43 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004499 | N,N-dimethylaniline monooxygenase activity | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.20 | 1.29 | 7.10 |
| 5d_25C | Five days - 25 degrees Celsius | 2.09 | 0.40 | 3.77 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.45 | 0.06 | 2.85 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.70 | 0.00 | 1.44 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.91 | 0.00 | 2.02 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.59 | 0.99 | 6.19 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.091757 | no |
| 3d_25C | 7d_25C | 0.040411 | yes |
| 3d_25C | 7d_15C | 0.019886 | yes |
| 3d_25C | 7d_30C | 0.770468 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.545522 | no |
| 5d_25C | 7d_15C | 0.196488 | no |
| 5d_25C | 7d_30C | 0.222175 | no |
| 5d_25C | 10d_25C | 0.043971 | yes |
| 7d_25C | 7d_15C | 0.529520 | no |
| 7d_25C | 7d_30C | 0.066809 | no |
| 7d_25C | 10d_25C | 0.222975 | no |
| 7d_15C | 7d_30C | 0.036939 | yes |
| 7d_15C | 10d_25C | 0.765596 | no |
| 7d_30C | 10d_25C | 0.002297 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 3832 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g787.t1 MSESVRVAVIGAGISGVVTAGHLLAAGIQVTVFERNNATGGVWIYDKRTPIEAQYPSPRPSASQEYVKDEREGNE RKVLLHAPPGPCYESLTNNVSTPLLRTKLNAWPEGTAPFVKHNVLKEYIQDTSKKAGVDDITKFGARVTRVHKDG PKWTVHWSTLSEGQDPTEKEESATFDSVIVASGHYHTPLVPNIRGLPEAKAQWPERIFHSKSFRRSEGFKGKNVL LLGGGVSSLDIATEISGTAHHVYQSTRNGAFDLPESALPENASRIAEVEAFEPSTSTSANTEHLPLTVHLKSGET LHGIDTIILCTGYQMALPFLDEYNDYTSSAAEANDTVLVTDGTQVHNLHQDIFYIPDPTLAFVGIPFYTATFSLF EFQAIAVTAFLSGVAQLPSTASLRTEYENRVKEKGLGRSFHSLKDKEQPYVEELIKWVNTGRAERGLPLIEGHTE SWITERAALTERLKLILAGKLPRADILKSPLEVGVTA* |
| Coding | >Pro_DTO377G3_2|g787.t1 ATGAGTGAGTCCGTTCGAGTTGCTGTTATTGGGGCTGGGATCAGTGGAGTGGTTACTGCTGGGCATCTTCTGGCA GCTGGAATTCAGGTGACGGTGTTTGAGAGGAACAATGCAACTGGTGGAGTTTGGATTTATGATAAGCGTACTCCG ATTGAAGCCCAGTACCCATCGCCAAGACCGTCTGCTTCACAGGAATATGTGAAGGATGAGAGGGAAGGGAATGAA AGAAAGGTCTTGCTTCATGCGCCTCCGGGGCCTTGTTATGAAAGTCTCACCAATAATGTCTCGACACCCTTACTA CGGACCAAACTCAACGCATGGCCAGAAGGAACTGCTCCTTTTGTGAAGCATAATGTGCTCAAGGAATACATCCAA GACACGTCGAAGAAGGCCGGTGTTGATGATATAACCAAGTTTGGCGCCCGAGTGACCCGCGTCCATAAGGATGGA CCAAAATGGACGGTTCACTGGAGCACTTTGAGCGAAGGCCAAGATCCCACCGAGAAGGAGGAGTCTGCAACGTTT GACTCGGTGATTGTTGCCTCGGGCCATTACCATACGCCTCTCGTCCCGAATATACGGGGTCTACCAGAGGCAAAA GCCCAATGGCCGGAGAGGATCTTCCATTCAAAGTCTTTCCGAAGGTCGGAAGGATTCAAAGGAAAGAATGTACTT TTGCTCGGTGGAGGTGTCTCTTCTCTCGACATAGCCACTGAAATCAGTGGAACCGCACATCACGTGTACCAAAGC ACCCGAAATGGTGCCTTCGATCTCCCCGAGAGTGCACTTCCAGAAAACGCATCAAGAATCGCCGAGGTCGAAGCA TTCGAACCTTCTACATCGACATCCGCGAACACCGAGCACTTGCCCTTAACCGTACATCTCAAATCCGGGGAGACC TTGCACGGTATAGACACAATTATTCTTTGCACAGGATATCAAATGGCACTTCCATTCCTCGACGAATATAATGAT TACACTTCGTCTGCGGCCGAGGCAAATGATACCGTGCTCGTCACAGATGGCACTCAAGTCCACAACTTGCATCAA GACATCTTCTACATCCCAGATCCCACGCTGGCGTTTGTCGGCATTCCATTCTACACCGCGACCTTCTCTCTATTC GAGTTCCAAGCTATCGCCGTGACAGCCTTCCTGTCTGGAGTTGCGCAGCTTCCATCTACTGCGAGTCTCCGGACG GAATATGAGAATCGGGTTAAAGAGAAGGGACTTGGACGGAGCTTCCACTCACTCAAGGATAAAGAGCAACCGTAT GTCGAGGAATTGATCAAATGGGTTAATACTGGAAGAGCTGAGCGTGGTTTGCCTTTGATTGAGGGTCATACTGAG AGCTGGATTACAGAGAGAGCGGCTTTGACCGAGAGACTTAAGTTGATTCTGGCAGGAAAGCTTCCTAGGGCGGAT ATTCTCAAAAGCCCATTGGAGGTGGGGGTTACTGCATGA |
| Transcript | >Pro_DTO377G3_2|g787.t1 ATGAGTGAGTCCGTTCGAGTTGCTGTTATTGGGGCTGGGATCAGTGGAGTGGTTACTGCTGGGCATCTTCTGGCA GCTGGAATTCAGGTGACGGTGTTTGAGAGGAACAATGCAACTGGTGGAGTTTGGATTTATGATAAGCGTACTCCG ATTGAAGCCCAGTACCCATCGCCAAGACCGTCTGCTTCACAGGAATATGTGAAGGATGAGAGGGAAGGGAATGAA AGAAAGGTCTTGCTTCATGCGCCTCCGGGGCCTTGTTATGAAAGTCTCACCAATAATGTCTCGACACCCTTACTA CGGACCAAACTCAACGCATGGCCAGAAGGAACTGCTCCTTTTGTGAAGCATAATGTGCTCAAGGAATACATCCAA GACACGTCGAAGAAGGCCGGTGTTGATGATATAACCAAGTTTGGCGCCCGAGTGACCCGCGTCCATAAGGATGGA CCAAAATGGACGGTTCACTGGAGCACTTTGAGCGAAGGCCAAGATCCCACCGAGAAGGAGGAGTCTGCAACGTTT GACTCGGTGATTGTTGCCTCGGGCCATTACCATACGCCTCTCGTCCCGAATATACGGGGTCTACCAGAGGCAAAA GCCCAATGGCCGGAGAGGATCTTCCATTCAAAGTCTTTCCGAAGGTCGGAAGGATTCAAAGGAAAGAATGTACTT TTGCTCGGTGGAGGTGTCTCTTCTCTCGACATAGCCACTGAAATCAGTGGAACCGCACATCACGTGTACCAAAGC ACCCGAAATGGTGCCTTCGATCTCCCCGAGAGTGCACTTCCAGAAAACGCATCAAGAATCGCCGAGGTCGAAGCA TTCGAACCTTCTACATCGACATCCGCGAACACCGAGCACTTGCCCTTAACCGTACATCTCAAATCCGGGGAGACC TTGCACGGTATAGACACAATTATTCTTTGCACAGGATATCAAATGGCACTTCCATTCCTCGACGAATATAATGAT TACACTTCGTCTGCGGCCGAGGCAAATGATACCGTGCTCGTCACAGATGGCACTCAAGTCCACAACTTGCATCAA GACATCTTCTACATCCCAGATCCCACGCTGGCGTTTGTCGGCATTCCATTCTACACCGCGACCTTCTCTCTATTC GAGTTCCAAGCTATCGCCGTGACAGCCTTCCTGTCTGGAGTTGCGCAGCTTCCATCTACTGCGAGTCTCCGGACG GAATATGAGAATCGGGTTAAAGAGAAGGGACTTGGACGGAGCTTCCACTCACTCAAGGATAAAGAGCAACCGTAT GTCGAGGAATTGATCAAATGGGTTAATACTGGAAGAGCTGAGCGTGGTTTGCCTTTGATTGAGGGTCATACTGAG AGCTGGATTACAGAGAGAGCGGCTTTGACCGAGAGACTTAAGTTGATTCTGGCAGGAAAGCTTCCTAGGGCGGAT ATTCTCAAAAGCCCATTGGAGGTGGGGGTTACTGCATGA |
| Gene | >Pro_DTO377G3_2|g787.t1 ATGAGTGAGTCCGTTCGAGTTGCTGTTATTGGGGCTGGGATCAGTGGAGTGGTTACTGCTGGGCATCTTCTGGCA GCTGGAATTCAGGTGACGGTGTTTGAGAGGAACAATGCAACTGGTGGAGTTTGGTAAGATGGTGAATTGTTTATT TTGATCTGGAATAATGGACTAAAGCATTGTAGGATTTATGATAAGCGTACTCCGATTGAAGCCCAGTACCCATCG CCAAGACCGTCTGCTTCACAGGAATATGTGAAGGATGAGAGGGAAGGGAATGAAAGAAAGGTCTTGCTTCATGCG CCTCCGGGGTAGGTTTCTGATTTATGTTTTTTTTTAACTATAGCAGGCGTACTCACTATTGACCAGGCCTTGTTA TGAAAGTCTCACCAATAATGTCTCGACACCCTTACTACGGACCAAACTCAACGCATGGCCAGAAGGAACTGCTCC TTTTGTGAAGCATAATGTGCTCAAGGAATACATCCAAGACACGTCGAAGAAGGCCGGTGTTGATGATATAACCAA GTTTGGCGCCCGAGTGACCCGCGTCCATAAGGATGGACCAAAATGGACGGTTCACTGGAGCACTTTGAGCGAAGG CCAAGATCCCACCGAGAAGGAGGAGTCTGCAGTAAGTTCTCATATCTATAAAATTTTTCATTCTCAGTGGTTCTG ACCGGATCATAGACGTTTGACTCGGTGATTGTTGCCTCGGGCCATTACCATACGCCTCTCGTCCCGAATATACGG GGTCTACCAGAGGCAAAAGCCCAATGGCCGGAGAGGATCTTCCATTCAAAGTCTTTCCGAAGGTCGGAAGGATTC AAAGGAAAGGTAGGAGCGACTGCATTCTAGTATTGAGTGGCACTGAACTGACTCAACTACAGAATGTACTTTTGC TCGGTGGAGGTGTCTCTTCTCTCGACATAGCCACTGAAATCAGTGGAACCGCACATCACGTGTACCAAAGCACCC GAAATGGTGCCTTCGATCTCCCCGAGAGTGCACTTCCAGAAAACGCATCAAGAATCGCCGAGGTCGAAGCATTCG AACCTTCTACATCGACATCCGCGAACACCGAGCACTTGCCCTTAACCGTACATCTCAAATCCGGGGAGACCTTGC ACGGTATAGACACAATTATTCTTTGCACAGGATATCAAATGGCACTTCCATTCCTCGACGAATATAATGATTACA CTTCGTCTGCGGCCGAGGCAAATGATACCGTGCTCGTCACAGATGGCACTCAAGTCCACAACTTGCATCAAGACA TCTTCTACATCCCAGATCCCACGCTGGCGTTTGTCGGCATTCCATTCTACACCGCGACCTTCTCTCTATTCGAGT TCCAAGCTATCGCCGTGACAGCCTTCCTGTCTGGAGTTGCGCAGCTTCCATCTACTGCGAGTCTCCGGACGGAAT ATGAGAATCGGGTTAAAGAGAAGGGACTTGGACGGAGCTTCCACTCACTCAAGGATAAAGAGCAACCGTATGTCG AGGAATTGATCAAATGGGTTAATACTGGAAGAGCTGAGCGTGGTTTGCCTTTGATTGAGGGTCATACTGAGAGCT GGATTACAGAGAGAGCGGCTTTGACCGAGAGACTTAAGTTGATTCTGGCAGGAAAGCTTCCTAGGGCGGATATTC TCAAAAGCCCATTGGAGGTGGGGGTTACTGCATGA |