© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7869.t1 |
| Gene name | |
| Location | scaffold_27:23019..24264 |
| Strand | - |
| Gene length (bp) | 1245 |
| Transcript length (bp) | 1125 |
| Coding sequence length (bp) | 1125 |
| Protein length (aa) | 375 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14420 | Clr5 | Clr5 domain | 4.1E-15 | 22 | 74 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 77.10 | 45.59 | 108.61 |
| 5d_25C | Five days - 25 degrees Celsius | 43.49 | 23.01 | 63.96 |
| 7d_25C | Seven days - 25 degrees Celsius | 49.64 | 26.30 | 72.98 |
| 10d_25C | Ten days - 25 degrees Celsius | 30.68 | 15.18 | 46.17 |
| 7d_15C | Seven days - 15 degrees Celsius | 30.19 | 13.94 | 46.45 |
| 7d_30C | Seven days - 30 degrees Celsius | 60.98 | 34.63 | 87.34 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.012904 | yes |
| 3d_25C | 7d_25C | 0.078000 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.358434 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.693798 | no |
| 5d_25C | 7d_15C | 0.214095 | no |
| 5d_25C | 7d_30C | 0.181081 | no |
| 5d_25C | 10d_25C | 0.211194 | no |
| 7d_25C | 7d_15C | 0.077331 | no |
| 7d_25C | 7d_30C | 0.479367 | no |
| 7d_25C | 10d_25C | 0.069866 | no |
| 7d_15C | 7d_30C | 0.006000 | yes |
| 7d_15C | 10d_25C | 0.973938 | no |
| 7d_30C | 10d_25C | 0.004450 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7869.t1 MENNYATPISPQSPNVFRPRRSDDWHEYREIIEQLYRNDQLKLRDVKRIMERDYKFFASEKQYKDRLAAWHVRKN IKAKEVHLMLRKQQKRAAQGKQTAFRVNGQNVDPKRIARFVRRYGTTWDTNRGKDQKAESSPEPQTPSDMTCYTP EPTDEHSATTPISPPDMQSPTREMPSYPLGSYGKSTAVPVSVSVPHDIDGRYLALDPNHLESLPDLELEESPTMP LSMHPNQPRQIQSYHQSIGNHLAHGAGSHSHGAHSPHPVHVHSPHGHSPLPAHAVHSSHGQSAHSGHRSHSVHNA HTHTSHPHARPGPAPRDLEDAPGEADTHPPDWNTVESFQTRLQDLDFTLTQSMSKWARDHDPNHEPPHHEGLGM* |
| Coding | >Pro_DTO377G3_2|g7869.t1 ATGGAAAATAATTACGCAACCCCCATCTCCCCTCAGTCGCCAAACGTCTTTCGGCCCCGCCGGTCCGATGACTGG CATGAATATCGTGAAATCATCGAGCAACTCTACCGCAACGACCAGTTGAAACTGCGCGATGTGAAACGGATTATG GAGAGAGATTATAAGTTCTTTGCATCAGAAAAACAATACAAAGATCGTCTGGCCGCATGGCACGTTCGAAAGAAC ATCAAAGCCAAAGAAGTCCATCTGATGCTTCGCAAGCAACAGAAGCGCGCCGCCCAAGGCAAACAGACGGCCTTC CGCGTAAACGGCCAGAACGTCGATCCCAAGCGCATCGCCCGCTTCGTGCGTCGCTATGGAACAACGTGGGATACC AACCGCGGCAAGGACCAAAAGGCCGAGTCAAGCCCCGAGCCTCAAACCCCCTCCGACATGACCTGCTACACCCCA GAGCCAACAGACGAACACAGCGCCACAACCCCCATCTCACCCCCCGACATGCAATCCCCAACCCGAGAAATGCCC TCCTACCCACTCGGCTCATACGGTAAATCCACAGCCGTTCCGGTGAGTGTGAGTGTACCGCATGATATTGATGGC AGATATCTCGCTCTAGACCCAAACCACCTTGAAAGCCTCCCCGATCTGGAACTGGAAGAAAGCCCGACCATGCCG CTGTCCATGCACCCAAACCAGCCCCGCCAGATCCAGTCCTACCACCAGTCAATAGGCAACCATCTCGCGCACGGG GCAGGGTCTCACTCGCACGGCGCTCACAGCCCGCATCCGGTCCATGTGCATAGCCCCCATGGGCACAGCCCGCTC CCCGCTCATGCTGTACACAGCTCGCATGGGCAGAGCGCGCACAGCGGACACAGATCCCACAGCGTGCACAATGCG CACACGCACACCTCGCACCCGCATGCTCGTCCTGGTCCTGCGCCTCGGGATCTCGAGGATGCGCCTGGTGAAGCT GATACCCATCCGCCTGACTGGAATACGGTCGAGTCGTTCCAGACGCGGTTGCAGGATTTGGACTTTACGCTTACG CAGTCGATGTCGAAGTGGGCTAGGGATCATGACCCTAACCACGAGCCTCCTCACCATGAGGGATTGGGGATGTGA |
| Transcript | >Pro_DTO377G3_2|g7869.t1 ATGGAAAATAATTACGCAACCCCCATCTCCCCTCAGTCGCCAAACGTCTTTCGGCCCCGCCGGTCCGATGACTGG CATGAATATCGTGAAATCATCGAGCAACTCTACCGCAACGACCAGTTGAAACTGCGCGATGTGAAACGGATTATG GAGAGAGATTATAAGTTCTTTGCATCAGAAAAACAATACAAAGATCGTCTGGCCGCATGGCACGTTCGAAAGAAC ATCAAAGCCAAAGAAGTCCATCTGATGCTTCGCAAGCAACAGAAGCGCGCCGCCCAAGGCAAACAGACGGCCTTC CGCGTAAACGGCCAGAACGTCGATCCCAAGCGCATCGCCCGCTTCGTGCGTCGCTATGGAACAACGTGGGATACC AACCGCGGCAAGGACCAAAAGGCCGAGTCAAGCCCCGAGCCTCAAACCCCCTCCGACATGACCTGCTACACCCCA GAGCCAACAGACGAACACAGCGCCACAACCCCCATCTCACCCCCCGACATGCAATCCCCAACCCGAGAAATGCCC TCCTACCCACTCGGCTCATACGGTAAATCCACAGCCGTTCCGGTGAGTGTGAGTGTACCGCATGATATTGATGGC AGATATCTCGCTCTAGACCCAAACCACCTTGAAAGCCTCCCCGATCTGGAACTGGAAGAAAGCCCGACCATGCCG CTGTCCATGCACCCAAACCAGCCCCGCCAGATCCAGTCCTACCACCAGTCAATAGGCAACCATCTCGCGCACGGG GCAGGGTCTCACTCGCACGGCGCTCACAGCCCGCATCCGGTCCATGTGCATAGCCCCCATGGGCACAGCCCGCTC CCCGCTCATGCTGTACACAGCTCGCATGGGCAGAGCGCGCACAGCGGACACAGATCCCACAGCGTGCACAATGCG CACACGCACACCTCGCACCCGCATGCTCGTCCTGGTCCTGCGCCTCGGGATCTCGAGGATGCGCCTGGTGAAGCT GATACCCATCCGCCTGACTGGAATACGGTCGAGTCGTTCCAGACGCGGTTGCAGGATTTGGACTTTACGCTTACG CAGTCGATGTCGAAGTGGGCTAGGGATCATGACCCTAACCACGAGCCTCCTCACCATGAGGGATTGGGGATGTGA |
| Gene | >Pro_DTO377G3_2|g7869.t1 ATGGAAAATAATTACGCAACCCCCATCTCCCCTCAGTCGCCAAACGTCTTTCGGCCCCGCCGGTCCGATGACTGG CATGAATATCGTGAAATCATCGAGCAACTCTACCGCAACGACCAGTTGAAACTGCGCGATGTGAAACGGATTATG GAGAGAGATTATAAGTTCTTTGCATCGTAATACACCCTTCTCTTCTACCTTCGTCTGAATAGATCTAACTCGCTC TAGAGAAAAACAATACAAAGATCGTCTGGCCGCATGGCACGTTCGAAAGAACATCAAAGCCAAAGAAGTCCATCT GATGCTTCGCAAGCAACAGAAGCGCGCCGCCCAAGGCAAACAGACGGCCTTCCGCGTAAACGGCCAGAACGTCGA TCCCAAGCGCATCGCCCGCTTCGTGCGTCGCTATGGAACAACGTGGGATACCAACCGCGGCAAGGACCAAAAGGC CGAGTCAAGCCCCGAGCCTCGTGAGTGAATCATCATGGATATGAACTAGACGGTATCAAACCAAACATACATACT AATAATCCCATAGAAACCCCCTCCGACATGACCTGCTACACCCCAGAGCCAACAGACGAACACAGCGCCACAACC CCCATCTCACCCCCCGACATGCAATCCCCAACCCGAGAAATGCCCTCCTACCCACTCGGCTCATACGGTAAATCC ACAGCCGTTCCGGTGAGTGTGAGTGTACCGCATGATATTGATGGCAGATATCTCGCTCTAGACCCAAACCACCTT GAAAGCCTCCCCGATCTGGAACTGGAAGAAAGCCCGACCATGCCGCTGTCCATGCACCCAAACCAGCCCCGCCAG ATCCAGTCCTACCACCAGTCAATAGGCAACCATCTCGCGCACGGGGCAGGGTCTCACTCGCACGGCGCTCACAGC CCGCATCCGGTCCATGTGCATAGCCCCCATGGGCACAGCCCGCTCCCCGCTCATGCTGTACACAGCTCGCATGGG CAGAGCGCGCACAGCGGACACAGATCCCACAGCGTGCACAATGCGCACACGCACACCTCGCACCCGCATGCTCGT CCTGGTCCTGCGCCTCGGGATCTCGAGGATGCGCCTGGTGAAGCTGATACCCATCCGCCTGACTGGAATACGGTC GAGTCGTTCCAGACGCGGTTGCAGGATTTGGACTTTACGCTTACGCAGTCGATGTCGAAGTGGGCTAGGGATCAT GACCCTAACCACGAGCCTCCTCACCATGAGGGATTGGGGATGTGA |