© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g7854.t1 |
| Gene name | |
| Location | scaffold_26:282388..283080 |
| Strand | - |
| Gene length (bp) | 692 |
| Transcript length (bp) | 636 |
| Coding sequence length (bp) | 636 |
| Protein length (aa) | 212 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01583 | APS_kinase | Adenylylsulphate kinase | 2.1E-72 | 24 | 186 |
| PF13671 | AAA_33 | AAA domain | 1.2E-06 | 28 | 149 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 77.87 | 41.66 | 114.07 |
| 5d_25C | Five days - 25 degrees Celsius | 41.81 | 18.93 | 64.69 |
| 7d_25C | Seven days - 25 degrees Celsius | 41.17 | 18.75 | 63.59 |
| 10d_25C | Ten days - 25 degrees Celsius | 32.58 | 13.79 | 51.37 |
| 7d_15C | Seven days - 15 degrees Celsius | 46.70 | 21.54 | 71.85 |
| 7d_30C | Seven days - 30 degrees Celsius | 34.45 | 14.86 | 54.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.022165 | yes |
| 3d_25C | 7d_25C | 0.019090 | yes |
| 3d_25C | 7d_15C | 0.067601 | no |
| 3d_25C | 7d_30C | 0.004450 | yes |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.973938 | no |
| 5d_25C | 7d_15C | 0.784806 | no |
| 5d_25C | 7d_30C | 0.611005 | no |
| 5d_25C | 10d_25C | 0.489964 | no |
| 7d_25C | 7d_15C | 0.750669 | no |
| 7d_25C | 7d_30C | 0.646545 | no |
| 7d_25C | 10d_25C | 0.523470 | no |
| 7d_15C | 7d_30C | 0.383655 | no |
| 7d_15C | 10d_25C | 0.280098 | no |
| 7d_30C | 10d_25C | 0.910630 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 8169 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7854.t1 MSSNITFHASALTRSERTALRNQQGLTIWLTGLSASGKSTLAVELEHQLVRDRGVHAYRLDGDNIRFGLNKDLGF SEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP KGLYKKAREGLIKEFTGISAPYEAPVNPEVHVKNYELPVQDAVKQIIDYLDSKGYLPSKKE* |
| Coding | >Pro_DTO377G3_2|g7854.t1 ATGTCTTCCAACATCACCTTCCACGCCAGCGCCCTGACCCGCAGCGAGCGTACCGCGCTGCGCAACCAGCAAGGT CTCACAATCTGGTTGACCGGACTCTCCGCCTCCGGCAAGTCAACCCTGGCCGTCGAGCTTGAGCACCAGCTCGTT CGCGACCGCGGCGTGCACGCCTACCGCCTCGACGGCGACAACATCCGCTTCGGACTGAACAAGGACCTTGGCTTC AGCGAGGCCGACCGGAACGAGAACATCCGGCGCATTGCCGAGGTGGCCAAGCTGTTCGCCGACTCCAACTCCATC GCCATTACGTCGTTCATCTCACCCTACCGGAAGGATCGTGACACTGCCCGCCAGCTGCATGAGGTCGCCACGCCC GGCGAGGAGACCGGCCTGCCGTTCGTCGAGGTCTACGTTGATGTCCCCGTTGAGGTCGCTGAGCAGCGTGACCCC AAGGGTCTGTACAAGAAGGCTCGCGAGGGTCTCATTAAGGAGTTCACGGGTATCTCGGCTCCTTACGAGGCGCCG GTCAACCCCGAGGTTCATGTGAAGAACTATGAGCTTCCCGTTCAGGATGCTGTGAAGCAGATTATTGATTACCTT GACTCCAAGGGTTACTTGCCTTCCAAGAAGGAGTAA |
| Transcript | >Pro_DTO377G3_2|g7854.t1 ATGTCTTCCAACATCACCTTCCACGCCAGCGCCCTGACCCGCAGCGAGCGTACCGCGCTGCGCAACCAGCAAGGT CTCACAATCTGGTTGACCGGACTCTCCGCCTCCGGCAAGTCAACCCTGGCCGTCGAGCTTGAGCACCAGCTCGTT CGCGACCGCGGCGTGCACGCCTACCGCCTCGACGGCGACAACATCCGCTTCGGACTGAACAAGGACCTTGGCTTC AGCGAGGCCGACCGGAACGAGAACATCCGGCGCATTGCCGAGGTGGCCAAGCTGTTCGCCGACTCCAACTCCATC GCCATTACGTCGTTCATCTCACCCTACCGGAAGGATCGTGACACTGCCCGCCAGCTGCATGAGGTCGCCACGCCC GGCGAGGAGACCGGCCTGCCGTTCGTCGAGGTCTACGTTGATGTCCCCGTTGAGGTCGCTGAGCAGCGTGACCCC AAGGGTCTGTACAAGAAGGCTCGCGAGGGTCTCATTAAGGAGTTCACGGGTATCTCGGCTCCTTACGAGGCGCCG GTCAACCCCGAGGTTCATGTGAAGAACTATGAGCTTCCCGTTCAGGATGCTGTGAAGCAGATTATTGATTACCTT GACTCCAAGGGTTACTTGCCTTCCAAGAAGGAGTAA |
| Gene | >Pro_DTO377G3_2|g7854.t1 ATGTCTTCGTGAGTCCCAACTGAACCCCCAATGCCAATCTATCCAAAAAACTAACACCAAACAGCAACATCACCT TCCACGCCAGCGCCCTGACCCGCAGCGAGCGTACCGCGCTGCGCAACCAGCAAGGTCTCACAATCTGGTTGACCG GACTCTCCGCCTCCGGCAAGTCAACCCTGGCCGTCGAGCTTGAGCACCAGCTCGTTCGCGACCGCGGCGTGCACG CCTACCGCCTCGACGGCGACAACATCCGCTTCGGACTGAACAAGGACCTTGGCTTCAGCGAGGCCGACCGGAACG AGAACATCCGGCGCATTGCCGAGGTGGCCAAGCTGTTCGCCGACTCCAACTCCATCGCCATTACGTCGTTCATCT CACCCTACCGGAAGGATCGTGACACTGCCCGCCAGCTGCATGAGGTCGCCACGCCCGGCGAGGAGACCGGCCTGC CGTTCGTCGAGGTCTACGTTGATGTCCCCGTTGAGGTCGCTGAGCAGCGTGACCCCAAGGGTCTGTACAAGAAGG CTCGCGAGGGTCTCATTAAGGAGTTCACGGGTATCTCGGCTCCTTACGAGGCGCCGGTCAACCCCGAGGTTCATG TGAAGAACTATGAGCTTCCCGTTCAGGATGCTGTGAAGCAGATTATTGATTACCTTGACTCCAAGGGTTACTTGC CTTCCAAGAAGGAGTAA |