Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g785.t1
Gene name
Location	scaffold_01:2099903..2100869
Strand	-
Gene length (bp)	966
Transcript length (bp)	813
Coding sequence length (bp)	813
Protein length (aa)	271

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00293	NUDIX	NUDIX domain	3.2E-25	91	238

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 16	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	129.08	78.18	179.98
5d_25C	Five days - 25 degrees Celsius	278.26	169.70	386.81
7d_25C	Seven days - 25 degrees Celsius	350.55	210.83	490.27
10d_25C	Ten days - 25 degrees Celsius	588.21	343.31	833.10
7d_15C	Seven days - 15 degrees Celsius	159.08	96.80	221.37
7d_30C	Seven days - 30 degrees Celsius	324.71	197.10	452.32

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.000700	yes
3d_25C	7d_25C	0.000700	yes
3d_25C	7d_15C	0.396418	no
3d_25C	7d_30C	0.000700	yes
3d_25C	10d_25C	0.000700	yes
5d_25C	7d_25C	0.335541	no
5d_25C	7d_15C	0.004840	yes
5d_25C	7d_30C	0.550830	no
5d_25C	10d_25C	0.000700	yes
7d_25C	7d_15C	0.000700	yes
7d_25C	7d_30C	0.797706	no
7d_25C	10d_25C	0.010735	yes
7d_15C	7d_30C	0.000700	yes
7d_15C	10d_25C	0.000700	yes
7d_30C	10d_25C	0.002297	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g785.t1 MSATMTITSPPEITADNVATLFPEVDTSLAREVLPISQTNTARGSELEGYDEEQVRLMDEVCIVLDNNDRPIGSA SKKICHLMTNIDKGLLHRAFSVFLFDSNKRLLLQQRATEKITFPDMWTNTCCSHPLGIPGETGAELDAAVLGVKR AAQRKLDHELGIKAEQVPLDKFEFFTRIHYKAPSDGKWGEHEVDYILFIQADVDLDPSPNEVRDTTYVSADELKA MFEQPGLTFTPWFKLICNSMLFEWWSHLGTPALEKYKNEREIRRM*
Coding	>Pro_DTO377G3_2\|g785.t1 ATGAGCGCAACCATGACAATCACAAGCCCGCCTGAGATCACGGCGGACAATGTCGCCACTCTCTTTCCCGAGGTC GATACATCGCTCGCCCGTGAGGTCCTCCCGATAAGCCAAACAAACACTGCGCGCGGCAGCGAACTAGAGGGATAC GATGAAGAGCAGGTCCGCCTGATGGACGAGGTCTGCATTGTTTTGGATAACAATGACCGGCCGATTGGAAGCGCC AGCAAGAAGATTTGCCATTTAATGACCAACATCGACAAGGGTCTCCTTCATCGTGCCTTTTCAGTTTTCCTTTTC GACTCCAATAAGCGTCTTCTGCTCCAACAGCGCGCCACCGAGAAGATCACCTTCCCTGATATGTGGACCAACACT TGCTGCTCACACCCCCTTGGCATTCCCGGCGAGACTGGAGCTGAGCTCGATGCTGCCGTACTGGGTGTGAAGCGT GCTGCGCAGCGCAAGCTGGACCACGAACTGGGCATTAAGGCAGAGCAAGTACCCCTGGACAAATTTGAATTCTTC ACCCGAATTCACTACAAGGCCCCCAGCGATGGAAAGTGGGGTGAGCACGAGGTGGACTATATCCTCTTCATCCAG GCCGATGTCGATCTGGATCCCAGCCCCAACGAGGTCCGAGACACCACCTACGTCTCAGCTGATGAGCTTAAGGCA ATGTTCGAGCAGCCCGGTTTGACATTTACCCCCTGGTTCAAGCTTATCTGCAACTCCATGCTCTTCGAGTGGTGG AGCCACCTCGGTACACCAGCCCTGGAGAAGTACAAGAATGAGCGGGAAATCCGTCGGATGTAA
Transcript	>Pro_DTO377G3_2\|g785.t1 ATGAGCGCAACCATGACAATCACAAGCCCGCCTGAGATCACGGCGGACAATGTCGCCACTCTCTTTCCCGAGGTC GATACATCGCTCGCCCGTGAGGTCCTCCCGATAAGCCAAACAAACACTGCGCGCGGCAGCGAACTAGAGGGATAC GATGAAGAGCAGGTCCGCCTGATGGACGAGGTCTGCATTGTTTTGGATAACAATGACCGGCCGATTGGAAGCGCC AGCAAGAAGATTTGCCATTTAATGACCAACATCGACAAGGGTCTCCTTCATCGTGCCTTTTCAGTTTTCCTTTTC GACTCCAATAAGCGTCTTCTGCTCCAACAGCGCGCCACCGAGAAGATCACCTTCCCTGATATGTGGACCAACACT TGCTGCTCACACCCCCTTGGCATTCCCGGCGAGACTGGAGCTGAGCTCGATGCTGCCGTACTGGGTGTGAAGCGT GCTGCGCAGCGCAAGCTGGACCACGAACTGGGCATTAAGGCAGAGCAAGTACCCCTGGACAAATTTGAATTCTTC ACCCGAATTCACTACAAGGCCCCCAGCGATGGAAAGTGGGGTGAGCACGAGGTGGACTATATCCTCTTCATCCAG GCCGATGTCGATCTGGATCCCAGCCCCAACGAGGTCCGAGACACCACCTACGTCTCAGCTGATGAGCTTAAGGCA ATGTTCGAGCAGCCCGGTTTGACATTTACCCCCTGGTTCAAGCTTATCTGCAACTCCATGCTCTTCGAGTGGTGG AGCCACCTCGGTACACCAGCCCTGGAGAAGTACAAGAATGAGCGGGAAATCCGTCGGATGTAA
Gene	>Pro_DTO377G3_2\|g785.t1 ATGAGCGCAACCATGACAATCACAAGCCCGCCTGAGATCACGGCGGACAATGTCGCCACTCTCTTTCCCGAGGTC GATACATCGCTCGCCCGTGAGGTCCTCCCGATAAGCCAAACAAACACTGCGCGCGGCAGCGAACTAGAGGGATAC GATGAAGAGCAGGTCCGCCTGATGGACGAGGTCTGCATTGTTTTGGATAACAATGACCGGCCGATTGGAAGCGCC AGCAAGAAGATTTGTATGTTTCGCATCCTATAATCACCCACAGATGTACAGAATGGCGGGGTAGTGGACACAACA TGGCAAGATAAAAACACTGACAGTTGCATTTGCATAGGCCATTTAATGACCAACATCGACAAGGGTCTCCTTCAT CGTGCCTTTTCAGTTTTCCTTTTCGACTCCAATAAGCGTCTTCTGCTCCAACAGCGCGCCACCGAGAAGATCACC TTCCCTGATATGTGGACCAACACTTGCTGCTCACACCCCCTTGGCATTCCCGGCGAGACTGGAGCTGAGCTCGAT GCTGCCGTACTGGGTGTGAAGCGTGCTGCGCAGCGCAAGCTGGACCACGAACTGGGCATTAAGGCAGAGCAAGTA CCCCTGGACAAATTTGAATTCTTCACCCGAATTCACTACAAGGCCCCCAGCGATGGAAAGTGGGGTGAGCACGAG GGTATGTTACATGCAATATAGATCTGATTCGATGGAAATACTGACATTTTGCTAGTGGACTATATCCTCTTCATC CAGGCCGATGTCGATCTGGATCCCAGCCCCAACGAGGTCCGAGACACCACCTACGTCTCAGCTGATGAGCTTAAG GCAATGTTCGAGCAGCCCGGTTTGACATTTACCCCCTGGTTCAAGCTTATCTGCAACTCCATGCTCTTCGAGTGG TGGAGCCACCTCGGTACACCAGCCCTGGAGAAGTACAAGAATGAGCGGGAAATCCGTCGGATGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail