© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7842.t1 |
| Gene name | |
| Location | scaffold_26:253738..254206 |
| Strand | + |
| Gene length (bp) | 468 |
| Transcript length (bp) | 468 |
| Coding sequence length (bp) | 468 |
| Protein length (aa) | 156 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01220 | DHquinase_II | Dehydroquinase class II | 1.4E-62 | 4 | 140 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003855 | 3-dehydroquinate dehydratase activity | Yes |
| GO:0016835 | carbon-oxygen lyase activity | No |
| GO:0016836 | hydro-lyase activity | No |
| GO:0016829 | lyase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.74 | 0.0 | 5.90 |
| 5d_25C | Five days - 25 degrees Celsius | 3.43 | 0.0 | 7.01 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.94 | 0.0 | 4.35 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.43 | 0.0 | 7.10 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.78 | 0.0 | 2.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.68 | 0.0 | 7.80 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.788538 | no |
| 3d_25C | 7d_25C | 0.694787 | no |
| 3d_25C | 7d_15C | 0.177767 | no |
| 3d_25C | 7d_30C | 0.729094 | no |
| 3d_25C | 10d_25C | 0.789024 | no |
| 5d_25C | 7d_25C | 0.426413 | no |
| 5d_25C | 7d_15C | 0.119073 | no |
| 5d_25C | 7d_30C | 0.940264 | no |
| 5d_25C | 10d_25C | 0.989192 | no |
| 7d_25C | 7d_15C | 0.343512 | no |
| 7d_25C | 7d_30C | 0.387427 | no |
| 7d_25C | 10d_25C | 0.424958 | no |
| 7d_15C | 7d_30C | 0.107013 | no |
| 7d_15C | 10d_25C | 0.118422 | no |
| 7d_30C | 10d_25C | 0.938445 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7842.t1 MGKSILLINGPNLNLLGTREPHIYGHTTLSDIESNSREVAASHGAVLESFQSNHEGAIVDRIQAARGKVDGIIIN PGAYTHTSVAIRDALLGVSIPFIELHVSNVHAREPWRHHSYFSDKAAGIIVGLGVYGYKVAVEHVCANFEEKEKE AKAAL* |
| Coding | >Pro_DTO377G3_2|g7842.t1 ATGGGTAAATCCATCCTCCTAATCAACGGCCCTAACCTGAACCTCCTGGGTACACGCGAGCCACACATTTACGGA CACACAACGCTCTCCGACATAGAGTCAAACAGTCGCGAGGTCGCCGCCAGCCATGGTGCTGTTCTCGAAAGCTTC CAGTCGAACCACGAAGGCGCTATCGTGGACCGCATTCAGGCGGCGCGTGGCAAGGTCGACGGTATCATCATCAAC CCAGGCGCATACACGCATACCTCCGTTGCGATCCGCGATGCCTTGCTCGGTGTCAGTATCCCTTTTATTGAGCTC CATGTGAGCAATGTCCATGCGCGCGAGCCCTGGAGACATCATTCGTACTTCAGTGATAAGGCTGCGGGCATTATT GTTGGTCTTGGGGTATACGGGTATAAGGTTGCAGTTGAGCATGTTTGTGCTAATTTCGAGGAGAAGGAAAAGGAG GCTAAGGCTGCGCTATGA |
| Transcript | >Pro_DTO377G3_2|g7842.t1 ATGGGTAAATCCATCCTCCTAATCAACGGCCCTAACCTGAACCTCCTGGGTACACGCGAGCCACACATTTACGGA CACACAACGCTCTCCGACATAGAGTCAAACAGTCGCGAGGTCGCCGCCAGCCATGGTGCTGTTCTCGAAAGCTTC CAGTCGAACCACGAAGGCGCTATCGTGGACCGCATTCAGGCGGCGCGTGGCAAGGTCGACGGTATCATCATCAAC CCAGGCGCATACACGCATACCTCCGTTGCGATCCGCGATGCCTTGCTCGGTGTCAGTATCCCTTTTATTGAGCTC CATGTGAGCAATGTCCATGCGCGCGAGCCCTGGAGACATCATTCGTACTTCAGTGATAAGGCTGCGGGCATTATT GTTGGTCTTGGGGTATACGGGTATAAGGTTGCAGTTGAGCATGTTTGTGCTAATTTCGAGGAGAAGGAAAAGGAG GCTAAGGCTGCGCTATGA |
| Gene | >Pro_DTO377G3_2|g7842.t1 ATGGGTAAATCCATCCTCCTAATCAACGGCCCTAACCTGAACCTCCTGGGTACACGCGAGCCACACATTTACGGA CACACAACGCTCTCCGACATAGAGTCAAACAGTCGCGAGGTCGCCGCCAGCCATGGTGCTGTTCTCGAAAGCTTC CAGTCGAACCACGAAGGCGCTATCGTGGACCGCATTCAGGCGGCGCGTGGCAAGGTCGACGGTATCATCATCAAC CCAGGCGCATACACGCATACCTCCGTTGCGATCCGCGATGCCTTGCTCGGTGTCAGTATCCCTTTTATTGAGCTC CATGTGAGCAATGTCCATGCGCGCGAGCCCTGGAGACATCATTCGTACTTCAGTGATAAGGCTGCGGGCATTATT GTTGGTCTTGGGGTATACGGGTATAAGGTTGCAGTTGAGCATGTTTGTGCTAATTTCGAGGAGAAGGAAAAGGAG GCTAAGGCTGCGCTATGA |