© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7826.t1 |
| Gene name | |
| Location | scaffold_26:207925..208841 |
| Strand | + |
| Gene length (bp) | 916 |
| Transcript length (bp) | 612 |
| Coding sequence length (bp) | 612 |
| Protein length (aa) | 204 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01105 | EMP24_GP25L | emp24/gp25L/p24 family/GOLD | 4.3E-50 | 21 | 198 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 228.27 | 139.44 | 317.11 |
| 5d_25C | Five days - 25 degrees Celsius | 177.38 | 107.07 | 247.68 |
| 7d_25C | Seven days - 25 degrees Celsius | 170.73 | 101.70 | 239.76 |
| 10d_25C | Ten days - 25 degrees Celsius | 169.51 | 102.12 | 236.89 |
| 7d_15C | Seven days - 15 degrees Celsius | 169.66 | 97.42 | 241.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 268.98 | 161.35 | 376.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.290173 | no |
| 3d_25C | 7d_25C | 0.206427 | no |
| 3d_25C | 7d_15C | 0.214356 | no |
| 3d_25C | 7d_30C | 0.543485 | no |
| 3d_25C | 10d_25C | 0.193405 | no |
| 5d_25C | 7d_25C | 0.911973 | no |
| 5d_25C | 7d_15C | 0.898425 | no |
| 5d_25C | 7d_30C | 0.059176 | no |
| 5d_25C | 10d_25C | 0.892170 | no |
| 7d_25C | 7d_15C | 0.986346 | no |
| 7d_25C | 7d_30C | 0.033480 | yes |
| 7d_25C | 10d_25C | 0.983774 | no |
| 7d_15C | 7d_30C | 0.036939 | yes |
| 7d_15C | 10d_25C | 0.998067 | no |
| 7d_30C | 10d_25C | 0.032181 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7826.t1 MRFSTSAILVTALGWITAATAHTIQLKSHSRECFHESLHRDDVMTVTFQVGDREFGGSNNIEVDFWVEDPLRNRQ YFKQAVASDDYSFTAQLDGKYNYCFSNEGWTSNSKEVSFNVHGIVYVPEHEMTQDPLEVEVRKLSEALTQVKDEQ SYIVVRERVHRNTAESTNGRVKWWSMFQLMVVIGEGVFQVWWLKRFFEVKRVV* |
| Coding | >Pro_DTO377G3_2|g7826.t1 ATGAGATTTTCAACAAGCGCAATCCTGGTCACCGCGCTGGGGTGGATCACCGCCGCGACCGCACACACCATCCAG CTCAAGTCTCACTCACGAGAATGCTTCCACGAGTCACTGCACCGCGACGATGTCATGACTGTCACTTTCCAGGTT GGAGATCGGGAGTTTGGAGGGAGCAATAACATTGAGGTTGATTTCTGGGTCGAGGATCCCCTGAGAAACCGCCAG TACTTCAAGCAAGCTGTTGCCTCCGACGACTACTCCTTCACCGCACAGCTGGACGGGAAATACAACTACTGCTTC AGCAACGAGGGCTGGACCTCCAACTCCAAGGAGGTCTCCTTCAACGTCCACGGAATTGTCTACGTGCCCGAACAT GAGATGACGCAGGATCCCCTCGAGGTCGAAGTCCGCAAACTTAGCGAGGCTTTGACGCAGGTAAAGGATGAGCAG TCGTACATCGTCGTGCGCGAGCGAGTGCACCGCAATACTGCAGAGAGCACGAACGGCCGCGTGAAGTGGTGGAGC ATGTTCCAACTTATGGTGGTTATTGGCGAGGGTGTGTTCCAGGTGTGGTGGCTCAAGAGATTCTTCGAGGTCAAG CGCGTGGTCTGA |
| Transcript | >Pro_DTO377G3_2|g7826.t1 ATGAGATTTTCAACAAGCGCAATCCTGGTCACCGCGCTGGGGTGGATCACCGCCGCGACCGCACACACCATCCAG CTCAAGTCTCACTCACGAGAATGCTTCCACGAGTCACTGCACCGCGACGATGTCATGACTGTCACTTTCCAGGTT GGAGATCGGGAGTTTGGAGGGAGCAATAACATTGAGGTTGATTTCTGGGTCGAGGATCCCCTGAGAAACCGCCAG TACTTCAAGCAAGCTGTTGCCTCCGACGACTACTCCTTCACCGCACAGCTGGACGGGAAATACAACTACTGCTTC AGCAACGAGGGCTGGACCTCCAACTCCAAGGAGGTCTCCTTCAACGTCCACGGAATTGTCTACGTGCCCGAACAT GAGATGACGCAGGATCCCCTCGAGGTCGAAGTCCGCAAACTTAGCGAGGCTTTGACGCAGGTAAAGGATGAGCAG TCGTACATCGTCGTGCGCGAGCGAGTGCACCGCAATACTGCAGAGAGCACGAACGGCCGCGTGAAGTGGTGGAGC ATGTTCCAACTTATGGTGGTTATTGGCGAGGGTGTGTTCCAGGTGTGGTGGCTCAAGAGATTCTTCGAGGTCAAG CGCGTGGTCTGA |
| Gene | >Pro_DTO377G3_2|g7826.t1 ATGAGATTTTCAACAAGCGCAATCCTGGTCACCGCGCTGGGGTGGATCACCGCCGCGACCGCACACACCATCCAG CTCAAGTCTCACTCACGAGAATGCTTCCACGAGTCACTGCACCGCGACGATGTCATGACTGTCACTTTCCAGGTT GGAGATCGGGAGTTTGGAGGGAGCAATAACATTGAGGTTGATTTCTGGGTATGAATTATCCCGGTGTTGCTAGGG AGTCCGCTTCTGCTCTGATGGTGGCTCTGGCATGGGATATCGGATCTATAAACCGAGAGGTCTATGCCTACCTAC GGACTAGGCCAGCTGCTAAATCATGATAGAGGAACGATTCAAAATAAGCTAGATGCTAACGCTCGGTCGTCGCAG GTCGAGGATCCCCTGAGAAACCGCCAGTACTTCAAGCAAGCTGTTGCCTCCGACGACTACTCCTTCACCGCACAG CTGGACGGGAAATACAACTACTGCTTCAGCAACGAGGGCTGGACCTCCAACTCCAAGGAGGTCTCCTTCAACGTC CACGGAATTGTCTACGTGCCCGAACATGAGATGACGCAGGATCCCCTCGAGGTCGAAGGTAAGCGTGGGAAATAA CAGCCGACGGAAGATGAAGGATATTGTGACTGATCATCTGGTACCATCTAGTCCGCAAACTTAGCGAGGCTTTGA CGCAGGTAAAGGATGAGCAGTCGTACATCGTCGTGCGCGAGCGAGTGCACCGCAATACTGCAGAGAGCACGAACG GCCGCGTGAAGTGGTGGAGCATGTTCCAACTTATGGTGGTTATTGGCGAGGGTGTGTTCCAGGTGTGGTGGCTCA AGAGATTCTTCGAGGTACGTGGGTTCCTTTGATTGAGACACCGGAAGATGATATACTAATGCTCCATATTTAGGT CAAGCGCGTGGTCTGA |