© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7824.t1 |
| Gene name | |
| Location | scaffold_26:197866..198947 |
| Strand | + |
| Gene length (bp) | 1081 |
| Transcript length (bp) | 951 |
| Coding sequence length (bp) | 951 |
| Protein length (aa) | 317 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00332 | Glyco_hydro_17 | Glycosyl hydrolases family 17 | 3.2E-40 | 24 | 314 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 107.64 | 65.25 | 150.03 |
| 5d_25C | Five days - 25 degrees Celsius | 447.40 | 258.98 | 635.82 |
| 7d_25C | Seven days - 25 degrees Celsius | 655.94 | 371.40 | 940.48 |
| 10d_25C | Ten days - 25 degrees Celsius | 1142.81 | 616.57 | 1669.04 |
| 7d_15C | Seven days - 15 degrees Celsius | 162.37 | 98.87 | 225.88 |
| 7d_30C | Seven days - 30 degrees Celsius | 606.17 | 344.67 | 867.67 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.051467 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.104218 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.222975 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.811479 | no |
| 7d_25C | 10d_25C | 0.019090 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.006742 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7824.t1 MRASGVVSLLLAAAPALVSAKGTLGFSLGDKNADGTCKSTSDYEADFDALKSLSTLVRTYSGTECNTPQNILPAA KNKGFKVVLGMWVGKPTDTNNLLEEPSFKGDWAAIQKAIPGYEDVIHAITVGSETLYRGDLTGPQLHTYISHVMD NVPKGVLVGTAESWNKLADGTGDALFTQEPVVTYVLANAFAYWQGTAADKAYQTYFDDMAGAMEHIQKIAGDNAD KINIVTGETGWPTDGGSDYEAAKAGTKNAQTFWKTGICGMLDWGVDLFYFEAFDESWKPDTKGDNGEMKDEKHWG LFTADRKVKFDTSCPN* |
| Coding | >Pro_DTO377G3_2|g7824.t1 ATGCGTGCATCTGGTGTTGTTTCCCTCCTGTTGGCCGCGGCCCCGGCCCTGGTCTCTGCTAAGGGCACTCTCGGT TTCTCCCTCGGTGACAAGAACGCCGACGGTACCTGCAAGTCTACCAGCGACTATGAGGCGGATTTCGATGCCCTG AAGAGCCTGTCTACTCTCGTCCGTACTTACTCCGGCACTGAGTGCAACACCCCTCAAAACATCCTGCCTGCTGCC AAAAACAAGGGCTTCAAGGTCGTTCTGGGCATGTGGGTGGGCAAGCCTACCGATACCAATAATCTTTTGGAGGAG CCCTCCTTCAAGGGAGATTGGGCCGCTATCCAGAAGGCCATTCCCGGTTACGAGGATGTCATCCATGCGATCACC GTCGGGTCCGAGACTCTCTACCGTGGTGACTTGACTGGACCCCAGCTCCACACTTACATCAGCCACGTTATGGAT AATGTGCCCAAGGGTGTCCTTGTCGGCACCGCCGAGAGCTGGAACAAGCTTGCTGACGGCACTGGCGACGCCCTG TTCACCCAGGAGCCCGTTGTGACATATGTCTTGGCCAACGCCTTTGCTTACTGGCAGGGTACTGCCGCCGACAAG GCCTACCAGACCTACTTCGATGACATGGCCGGCGCCATGGAGCACATCCAGAAGATCGCCGGCGACAACGCCGAC AAGATCAACATTGTTACCGGTGAGACCGGCTGGCCCACCGATGGCGGCTCTGACTATGAGGCTGCCAAGGCCGGT ACCAAGAATGCTCAGACCTTCTGGAAGACTGGTATCTGTGGCATGCTCGACTGGGGTGTTGACCTGTTCTACTTT GAGGCCTTCGACGAGTCCTGGAAGCCCGATACCAAGGGCGACAATGGCGAGATGAAGGATGAGAAGCACTGGGGT CTGTTCACCGCGGACCGCAAGGTCAAGTTCGACACCTCCTGCCCCAACTAG |
| Transcript | >Pro_DTO377G3_2|g7824.t1 ATGCGTGCATCTGGTGTTGTTTCCCTCCTGTTGGCCGCGGCCCCGGCCCTGGTCTCTGCTAAGGGCACTCTCGGT TTCTCCCTCGGTGACAAGAACGCCGACGGTACCTGCAAGTCTACCAGCGACTATGAGGCGGATTTCGATGCCCTG AAGAGCCTGTCTACTCTCGTCCGTACTTACTCCGGCACTGAGTGCAACACCCCTCAAAACATCCTGCCTGCTGCC AAAAACAAGGGCTTCAAGGTCGTTCTGGGCATGTGGGTGGGCAAGCCTACCGATACCAATAATCTTTTGGAGGAG CCCTCCTTCAAGGGAGATTGGGCCGCTATCCAGAAGGCCATTCCCGGTTACGAGGATGTCATCCATGCGATCACC GTCGGGTCCGAGACTCTCTACCGTGGTGACTTGACTGGACCCCAGCTCCACACTTACATCAGCCACGTTATGGAT AATGTGCCCAAGGGTGTCCTTGTCGGCACCGCCGAGAGCTGGAACAAGCTTGCTGACGGCACTGGCGACGCCCTG TTCACCCAGGAGCCCGTTGTGACATATGTCTTGGCCAACGCCTTTGCTTACTGGCAGGGTACTGCCGCCGACAAG GCCTACCAGACCTACTTCGATGACATGGCCGGCGCCATGGAGCACATCCAGAAGATCGCCGGCGACAACGCCGAC AAGATCAACATTGTTACCGGTGAGACCGGCTGGCCCACCGATGGCGGCTCTGACTATGAGGCTGCCAAGGCCGGT ACCAAGAATGCTCAGACCTTCTGGAAGACTGGTATCTGTGGCATGCTCGACTGGGGTGTTGACCTGTTCTACTTT GAGGCCTTCGACGAGTCCTGGAAGCCCGATACCAAGGGCGACAATGGCGAGATGAAGGATGAGAAGCACTGGGGT CTGTTCACCGCGGACCGCAAGGTCAAGTTCGACACCTCCTGCCCCAACTAG |
| Gene | >Pro_DTO377G3_2|g7824.t1 ATGCGTGCATCTGGTGTTGTTTCCCTCCTGTTGGCCGCGGCCCCGGCCCTGGTCTCTGCTAAGGGCACTCTCGGT TTCTCCCTCGGTGACAAGAACGCCGACGGTACCTGCAAGTCTACCAGCGACTATGAGGCGGATTTCGATGCCCTG AAGAGCCTGTCTACTCTCGTCCGTACTTACTCCGGCACTGAGTGCAACACCCCTCAAAACATCCTGCCTGCTGCC AAAAACAAGGGCTTCAAGGTCGTTCTGGGCATGTGGTAAGTTTTTTGTTATTCCTCTCACCCCCTAATCGGAACT ATTCTTATAACAGACCTTTTACTTCTTTAGGGTGGGCAAGCCTACCGATACCAATAATCTTTTGGAGGAGCCCTC CTTCAAGGGAGATTGGGCCGCTATCCAGAAGGCCATTCCCGGTTACGAGGATGTCATCCATGCGATCACCGTCGG GTCCGAGACTCTCTACCGTGGTGACTTGACTGGACCCCAGCTCCACACTTACATCAGCCACGTTATGGATAATGT GCCCAAGGGTGTCCTTGTCGGCACCGCCGAGAGCTGGAACAAGCTTGCTGACGGCACTGGCGACGCCCTGTTCAC CCAGGAGCCCGTTGTGACATATGTGTAAGTGGAAATGTAGAAGAAATCGGCAACTCTGCCCACTAATACTGACTC TCTCTGTAGCTTGGCCAACGCCTTTGCTTACTGGCAGGGTACTGCCGCCGACAAGGCCTACCAGACCTACTTCGA TGACATGGCCGGCGCCATGGAGCACATCCAGAAGATCGCCGGCGACAACGCCGACAAGATCAACATTGTTACCGG TGAGACCGGCTGGCCCACCGATGGCGGCTCTGACTATGAGGCTGCCAAGGCCGGTACCAAGAATGCTCAGACCTT CTGGAAGACTGGTATCTGTGGCATGCTCGACTGGGGTGTTGACCTGTTCTACTTTGAGGCCTTCGACGAGTCCTG GAAGCCCGATACCAAGGGCGACAATGGCGAGATGAAGGATGAGAAGCACTGGGGTCTGTTCACCGCGGACCGCAA GGTCAAGTTCGACACCTCCTGCCCCAACTAG |