© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7700.t1 |
| Gene name | |
| Location | scaffold_25:171609..173117 |
| Strand | - |
| Gene length (bp) | 1508 |
| Transcript length (bp) | 1284 |
| Coding sequence length (bp) | 1284 |
| Protein length (aa) | 428 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10199 | Adaptin_binding | Alpha and gamma adaptin binding protein p34 | 7.8E-20 | 293 | 422 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 33.37 | 18.50 | 48.24 |
| 5d_25C | Five days - 25 degrees Celsius | 34.96 | 19.75 | 50.16 |
| 7d_25C | Seven days - 25 degrees Celsius | 38.65 | 22.23 | 55.08 |
| 10d_25C | Ten days - 25 degrees Celsius | 42.48 | 24.50 | 60.46 |
| 7d_15C | Seven days - 15 degrees Celsius | 45.39 | 26.64 | 64.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 34.17 | 19.16 | 49.17 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.904661 | no |
| 3d_25C | 7d_25C | 0.636919 | no |
| 3d_25C | 7d_15C | 0.227409 | no |
| 3d_25C | 7d_30C | 0.952177 | no |
| 3d_25C | 10d_25C | 0.372332 | no |
| 5d_25C | 7d_25C | 0.756615 | no |
| 5d_25C | 7d_15C | 0.314241 | no |
| 5d_25C | 7d_30C | 0.953010 | no |
| 5d_25C | 10d_25C | 0.481554 | no |
| 7d_25C | 7d_15C | 0.571556 | no |
| 7d_25C | 7d_30C | 0.688123 | no |
| 7d_25C | 10d_25C | 0.767692 | no |
| 7d_15C | 7d_30C | 0.262461 | no |
| 7d_15C | 10d_25C | 0.844722 | no |
| 7d_30C | 10d_25C | 0.419302 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7700.t1 MTYSAPPSNPATSAKSNVKNISNPRRLLILTPTSQSLTIIPPLLHSLTGVPVLDPPQQPAPSPTLTPTPPQPASS STPSPPTSTFAGYTTHSPLRLETKYYRTEVPVWVDEIPLAIHDTDAQTTPTPTPTAEQWKTDFLSTEAEIVREAV GALVVCAHTPSDVTRLPGSNANADPAERSDVRALRDLMRGVGAVKELIDEERGGLGDVTGVFVLIGGRKGAAGVG VGQQRSKDADAELGLGVDDGDLGGGEAAPFSVGWWEDQLFDMGLVGWEVVEWDPKESLDVETRNQYGEREGMHRI KEVLETHDWSMVGGDDGFDEDNDPAMDSDDDLQDQLLGLGSSRGFGDEVHELEREMFGLRMAIERGGGDGDERDD SDNDDGEDEFDVESMETLMMRMQAIKDMSSELPESERKRFAAKAVKDIMREL* |
| Coding | >Pro_DTO377G3_2|g7700.t1 ATGACCTATTCAGCGCCCCCATCCAACCCCGCAACCTCCGCGAAATCCAATGTGAAGAATATCTCCAACCCGCGC CGCCTCCTAATCCTGACACCAACATCTCAATCCCTCACAATAATCCCCCCACTCCTACACTCCCTAACTGGTGTG CCCGTCCTCGACCCGCCACAACAGCCAGCCCCTTCGCCAACCCTGACCCCAACCCCACCACAGCCAGCCTCAAGC TCAACACCCTCACCACCAACAAGCACTTTCGCTGGATACACAACCCACAGCCCTCTCCGCCTCGAAACAAAATAC TACAGAACAGAAGTTCCCGTATGGGTCGACGAGATCCCACTCGCGATCCACGATACAGATGCACAAACTACTCCC ACACCAACACCAACAGCCGAGCAATGGAAAACCGACTTCTTAAGCACAGAAGCTGAGATCGTGCGCGAAGCTGTC GGGGCTCTAGTTGTGTGCGCGCATACTCCTAGTGATGTGACACGTTTACCAGGCTCCAATGCAAACGCAGACCCC GCCGAGCGGTCCGACGTGCGCGCACTGCGTGACCTGATGCGTGGTGTTGGCGCTGTCAAGGAGCTCATTGATGAG GAGCGTGGCGGGCTCGGTGATGTGACTGGTGTGTTTGTGTTGATTGGGGGGAGGAAGGGTGCTGCGGGTGTGGGT GTGGGTCAGCAGAGATCCAAGGATGCCGATGCGGAGCTGGGGCTTGGCGTTGATGATGGGGATTTAGGTGGTGGA GAGGCGGCGCCATTTTCGGTTGGGTGGTGGGAAGATCAGCTTTTTGATATGGGATTGGTGGGGTGGGAGGTTGTT GAGTGGGATCCTAAGGAGAGTTTGGATGTTGAGACGAGGAATCAATATGGAGAACGAGAGGGTATGCATCGTATC AAAGAGGTCCTTGAGACTCATGACTGGTCTATGGTTGGGGGTGACGATGGCTTTGACGAAGATAATGACCCTGCC ATGGATTCCGATGATGATCTTCAAGACCAACTATTAGGTCTGGGTAGCTCTCGTGGGTTTGGTGATGAGGTTCAT GAATTAGAGCGCGAAATGTTCGGTTTACGCATGGCGATCGAGCGTGGGGGTGGTGATGGTGATGAGAGAGATGAT TCTGACAATGATGATGGCGAAGATGAGTTTGATGTTGAGAGCATGGAGACATTGATGATGCGCATGCAGGCAATC AAGGATATGAGCTCCGAGCTGCCGGAGAGCGAACGGAAACGATTTGCTGCGAAGGCCGTGAAAGATATTATGCGC GAGCTCTGA |
| Transcript | >Pro_DTO377G3_2|g7700.t1 ATGACCTATTCAGCGCCCCCATCCAACCCCGCAACCTCCGCGAAATCCAATGTGAAGAATATCTCCAACCCGCGC CGCCTCCTAATCCTGACACCAACATCTCAATCCCTCACAATAATCCCCCCACTCCTACACTCCCTAACTGGTGTG CCCGTCCTCGACCCGCCACAACAGCCAGCCCCTTCGCCAACCCTGACCCCAACCCCACCACAGCCAGCCTCAAGC TCAACACCCTCACCACCAACAAGCACTTTCGCTGGATACACAACCCACAGCCCTCTCCGCCTCGAAACAAAATAC TACAGAACAGAAGTTCCCGTATGGGTCGACGAGATCCCACTCGCGATCCACGATACAGATGCACAAACTACTCCC ACACCAACACCAACAGCCGAGCAATGGAAAACCGACTTCTTAAGCACAGAAGCTGAGATCGTGCGCGAAGCTGTC GGGGCTCTAGTTGTGTGCGCGCATACTCCTAGTGATGTGACACGTTTACCAGGCTCCAATGCAAACGCAGACCCC GCCGAGCGGTCCGACGTGCGCGCACTGCGTGACCTGATGCGTGGTGTTGGCGCTGTCAAGGAGCTCATTGATGAG GAGCGTGGCGGGCTCGGTGATGTGACTGGTGTGTTTGTGTTGATTGGGGGGAGGAAGGGTGCTGCGGGTGTGGGT GTGGGTCAGCAGAGATCCAAGGATGCCGATGCGGAGCTGGGGCTTGGCGTTGATGATGGGGATTTAGGTGGTGGA GAGGCGGCGCCATTTTCGGTTGGGTGGTGGGAAGATCAGCTTTTTGATATGGGATTGGTGGGGTGGGAGGTTGTT GAGTGGGATCCTAAGGAGAGTTTGGATGTTGAGACGAGGAATCAATATGGAGAACGAGAGGGTATGCATCGTATC AAAGAGGTCCTTGAGACTCATGACTGGTCTATGGTTGGGGGTGACGATGGCTTTGACGAAGATAATGACCCTGCC ATGGATTCCGATGATGATCTTCAAGACCAACTATTAGGTCTGGGTAGCTCTCGTGGGTTTGGTGATGAGGTTCAT GAATTAGAGCGCGAAATGTTCGGTTTACGCATGGCGATCGAGCGTGGGGGTGGTGATGGTGATGAGAGAGATGAT TCTGACAATGATGATGGCGAAGATGAGTTTGATGTTGAGAGCATGGAGACATTGATGATGCGCATGCAGGCAATC AAGGATATGAGCTCCGAGCTGCCGGAGAGCGAACGGAAACGATTTGCTGCGAAGGCCGTGAAAGATATTATGCGC GAGCTCTGA |
| Gene | >Pro_DTO377G3_2|g7700.t1 ATGACCTATTCAGCGCCCCCATCCAACCCCGCAACCTCCGCGAAATCCAATGTGAAGAATATCTCCAACCCGCGC CGCCTCCTAATCCTGACACCAACATCTCAATCCCTCACAATAATCCCCCCACTCCTACACTCCCTAACTGGTGTG CCCGTCCTCGACCCGCCACAACAGCCAGCCCCTTCGCCAACCCTGACCCCAACCCCACCACAGCCAGCCTCAAGC TCAACACCCTCACCACCAACAAGCACTTTCGCTGGATACACAACCCACAGCCCTCTCCGCCTCGAAACAAAATAC TACAGAACAGAAGTTCCCGTATGGGTCGACGAGATCCCACTCGCGATCCACGATACAGATGCACAAACTACTCCC ACACCAACACCAACAGCCGAGCAATGGAAAACCGACTTCTTAAGCACAGAAGCTGAGATCGTGCGCGAAGCTGTC GGGGCTCTAGTTGTGTGCGCGCATACTCCTAGTGATGTGACACGTTTACCAGGCTCCAATGCAAACGCAGACCCC GCCGAGCGGTCCGACGTGCGCGCACTGCGTGACCTGATGCGTGGTGTTGGCGCTGTCAAGGAGCTCATTGATGAG GAGCGTGGCGGGCTCGGTGATGTGACTGGTGTGTTTGTGTTGATTGGGGGGAGGAAGGGTGCTGCGGGTGTGGGT GTGGGTCAGCAGAGATCCAAGGATGCCGATGCGGAGCTGGGGCTTGGCGTTGATGATGGGGATTTAGGTGGTGGA GAGGCGGCGCCATTTTCGGTTGGGTGGTGGGAAGATCAGCTTTTTGATATGGGATTGGTGGGGTGGGAGGTTGTT GAGTGGGATCCTAAGGAGAGTTTGGATGTTGAGACGAGGAATCAATATGGAGGTGAGTTCACTGAAGCAACCCAC CCATTCGCGGTTGAGCAGTAGTATTGGAGGAAAAACTTTGCGCACCTGGAATATCGGAGCAGGAATGATATGCCT CACCTGCGAATGGGCTGTATGGCAAGTTTTTGGATTTTAGCTGACTTATGCTACTTCTAGAACGAGAGGGTATGC ATCGTATCAAAGAGGTCCTTGAGACTCATGACTGGTCTATGGTTGGGGGTGACGATGGCTTTGACGAAGATAATG ACCCTGCCATGGATTCCGATGATGATCTTCAAGACCAACTATTAGGTCTGGGTAGCTCTCGTGGGTTTGGTGATG AGGTTCATGAATTAGAGCGCGAAATGTTCGGTTTACGCATGGCGATCGAGCGTGGGGGTGGTGATGGTGATGAGA GAGATGATTCTGACAATGATGATGGCGAAGATGAGTTTGATGTTGAGAGCATGGAGACATTGATGATGCGCATGC AGGCAATCAAGGGTATGATTCTATGTTGATTTCTCAGGCTCGCTATAGTTGACATTGCGGTGTACTGACTTGGCT TAGATATGAGCTCCGAGCTGCCGGAGAGCGAACGGAAACGATTTGCTGCGAAGGCCGTGAAAGATATTATGCGCG AGCTCTGA |