© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g770.t1 |
| Gene name | |
| Location | scaffold_01:2061878..2063649 |
| Strand | + |
| Gene length (bp) | 1771 |
| Transcript length (bp) | 1617 |
| Coding sequence length (bp) | 1617 |
| Protein length (aa) | 539 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 9.3E-70 | 65 | 518 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.9E-08 | 86 | 423 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 65 | 87 | 22 |
| 2 | 138 | 160 | 22 |
| 3 | 205 | 224 | 19 |
| 4 | 239 | 261 | 22 |
| 5 | 321 | 343 | 22 |
| 6 | 353 | 375 | 22 |
| 7 | 384 | 406 | 22 |
| 8 | 416 | 438 | 22 |
| 9 | 451 | 473 | 22 |
| 10 | 486 | 503 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g770.t1 MNSDITEKQTSAEEIEGQPTSMGGLVYDVGEKAHYDRAGAIEAEVLEHSMTVLQAVKAYPAASWWAFVMSCTIIM ESYCVFLMGQFIATAQFAEDFGVYSEKTNEWIIEASWQSAFQCSGPIGAFIGVFMAGPITSWIGYRWATIGGLMF LNGFIFIFFFANSQGMFFASQILEGIPWGIFIANAPAYCAEIVPMRLRAPATQMLQMFWAVGSIIVGGITYHYQS KNDSSAYRVPIAIQWIFPTPLAILLFLAPESPWWLVRKGRLAEAEKAIKRLGRASANDNPADAVAMMRRTIELEK TEKKPSLIELWKGTDRYRTLIVCGVYASQNLTGNLIANQAVYFFKQAGMVDNTAFALGLITSALQWIMVMLSWIL TTYLGRRTIYVYGQFINCAFLVALGIAASVGTSNAASNAQASLGLIVSVLFCLGPAPASWVIIGETSSVRLRPLT TGVGRGAYYLVNIPCIFLASYMLNTDKWNLGGKSGYIWAGTAFFCTVMSWIWVPEMKHRSFREIDILFRRHVPAR KWKQTVIDIRDDE* |
| Coding | >Pro_DTO377G3_2|g770.t1 ATGAATAGCGACATCACAGAGAAGCAGACCTCAGCGGAGGAGATCGAGGGACAGCCCACATCCATGGGTGGACTT GTCTACGATGTCGGTGAGAAGGCCCACTACGACAGAGCGGGCGCCATCGAGGCCGAGGTGCTTGAACATAGTATG ACTGTGCTTCAGGCTGTCAAGGCCTATCCCGCTGCCAGCTGGTGGGCATTCGTGATGTCATGCACCATTATCATG GAATCATACTGTGTCTTCTTGATGGGACAGTTTATAGCGACAGCTCAATTCGCCGAGGATTTTGGTGTATACAGC GAAAAAACAAACGAGTGGATTATCGAAGCTTCATGGCAGTCAGCATTCCAGTGTAGCGGGCCAATCGGTGCCTTC ATCGGTGTGTTCATGGCAGGTCCCATTACCAGTTGGATTGGATATCGATGGGCCACCATTGGTGGTCTCATGTTC TTGAACGGCTTCATCTTCATCTTCTTCTTCGCCAACAGCCAGGGTATGTTTTTCGCGTCCCAGATCCTGGAAGGC ATCCCGTGGGGCATTTTTATCGCCAATGCACCCGCCTACTGTGCCGAAATTGTGCCAATGAGATTGAGAGCTCCA GCGACACAGATGTTGCAAATGTTCTGGGCGGTTGGGTCGATCATAGTCGGCGGTATCACTTACCACTACCAATCC AAGAATGACTCGTCAGCGTACAGAGTTCCCATTGCAATCCAGTGGATTTTTCCTACTCCCCTCGCTATCCTACTC TTCCTCGCACCTGAATCACCCTGGTGGCTCGTACGAAAGGGCCGTCTGGCTGAGGCAGAGAAGGCCATCAAACGC CTTGGACGCGCGAGTGCAAATGATAATCCCGCTGACGCAGTCGCAATGATGCGTCGCACGATTGAACTCGAGAAG ACTGAGAAGAAGCCCAGTCTTATTGAACTGTGGAAAGGTACCGATCGCTACCGCACATTGATAGTGTGCGGTGTA TACGCATCTCAGAATCTGACAGGCAATCTGATTGCCAACCAAGCGGTTTACTTTTTCAAACAGGCCGGCATGGTA GACAACACCGCATTTGCACTTGGTCTCATCACTTCTGCCCTCCAGTGGATCATGGTCATGCTCTCTTGGATCCTC ACTACATACCTCGGCCGACGCACCATCTATGTTTATGGTCAATTCATCAACTGCGCATTCTTAGTCGCGCTCGGT ATTGCGGCTTCAGTTGGCACTAGTAACGCGGCTAGCAATGCGCAAGCGTCGCTTGGCTTGATCGTCTCTGTCCTG TTCTGTTTGGGACCCGCGCCTGCCTCATGGGTTATCATCGGGGAGACATCTTCCGTTCGTCTTAGACCACTGACA ACCGGTGTTGGACGAGGTGCATACTACTTGGTCAATATTCCTTGCATCTTCCTTGCCAGCTACATGCTCAACACT GATAAGTGGAATCTGGGCGGCAAGAGCGGCTACATCTGGGCTGGTACCGCCTTTTTCTGCACTGTCATGTCTTGG ATTTGGGTTCCAGAGATGAAGCACAGATCCTTCCGTGAGATTGACATTCTGTTCCGGCGCCATGTTCCGGCTCGC AAATGGAAGCAGACGGTCATCGATATCCGCGATGATGAGTAG |
| Transcript | >Pro_DTO377G3_2|g770.t1 ATGAATAGCGACATCACAGAGAAGCAGACCTCAGCGGAGGAGATCGAGGGACAGCCCACATCCATGGGTGGACTT GTCTACGATGTCGGTGAGAAGGCCCACTACGACAGAGCGGGCGCCATCGAGGCCGAGGTGCTTGAACATAGTATG ACTGTGCTTCAGGCTGTCAAGGCCTATCCCGCTGCCAGCTGGTGGGCATTCGTGATGTCATGCACCATTATCATG GAATCATACTGTGTCTTCTTGATGGGACAGTTTATAGCGACAGCTCAATTCGCCGAGGATTTTGGTGTATACAGC GAAAAAACAAACGAGTGGATTATCGAAGCTTCATGGCAGTCAGCATTCCAGTGTAGCGGGCCAATCGGTGCCTTC ATCGGTGTGTTCATGGCAGGTCCCATTACCAGTTGGATTGGATATCGATGGGCCACCATTGGTGGTCTCATGTTC TTGAACGGCTTCATCTTCATCTTCTTCTTCGCCAACAGCCAGGGTATGTTTTTCGCGTCCCAGATCCTGGAAGGC ATCCCGTGGGGCATTTTTATCGCCAATGCACCCGCCTACTGTGCCGAAATTGTGCCAATGAGATTGAGAGCTCCA GCGACACAGATGTTGCAAATGTTCTGGGCGGTTGGGTCGATCATAGTCGGCGGTATCACTTACCACTACCAATCC AAGAATGACTCGTCAGCGTACAGAGTTCCCATTGCAATCCAGTGGATTTTTCCTACTCCCCTCGCTATCCTACTC TTCCTCGCACCTGAATCACCCTGGTGGCTCGTACGAAAGGGCCGTCTGGCTGAGGCAGAGAAGGCCATCAAACGC CTTGGACGCGCGAGTGCAAATGATAATCCCGCTGACGCAGTCGCAATGATGCGTCGCACGATTGAACTCGAGAAG ACTGAGAAGAAGCCCAGTCTTATTGAACTGTGGAAAGGTACCGATCGCTACCGCACATTGATAGTGTGCGGTGTA TACGCATCTCAGAATCTGACAGGCAATCTGATTGCCAACCAAGCGGTTTACTTTTTCAAACAGGCCGGCATGGTA GACAACACCGCATTTGCACTTGGTCTCATCACTTCTGCCCTCCAGTGGATCATGGTCATGCTCTCTTGGATCCTC ACTACATACCTCGGCCGACGCACCATCTATGTTTATGGTCAATTCATCAACTGCGCATTCTTAGTCGCGCTCGGT ATTGCGGCTTCAGTTGGCACTAGTAACGCGGCTAGCAATGCGCAAGCGTCGCTTGGCTTGATCGTCTCTGTCCTG TTCTGTTTGGGACCCGCGCCTGCCTCATGGGTTATCATCGGGGAGACATCTTCCGTTCGTCTTAGACCACTGACA ACCGGTGTTGGACGAGGTGCATACTACTTGGTCAATATTCCTTGCATCTTCCTTGCCAGCTACATGCTCAACACT GATAAGTGGAATCTGGGCGGCAAGAGCGGCTACATCTGGGCTGGTACCGCCTTTTTCTGCACTGTCATGTCTTGG ATTTGGGTTCCAGAGATGAAGCACAGATCCTTCCGTGAGATTGACATTCTGTTCCGGCGCCATGTTCCGGCTCGC AAATGGAAGCAGACGGTCATCGATATCCGCGATGATGAGTAG |
| Gene | >Pro_DTO377G3_2|g770.t1 ATGAATAGCGACATCACAGAGAAGCAGACCTCAGCGGAGGAGATCGAGGGACAGCCCACATCCATGGGTGGACTT GTCTACGATGTCGGTGAGAAGGCCCACTACGACAGAGCGGGCGCCATCGAGGCCGAGGTGCTTGAACATAGTATG ACTGTGCTTCAGGCTGTCAAGGCCTATCCCGCTGCCAGCTGGTGGGCATTCGTGATGTCATGCACCATTGTAAGT TCCTGCTCGAGATAGGCAGATCATTTCCGTAACGTTGAAATAGATCATGGAATCATACTGTGTCTTCTTGATGGG ACAGTTTATAGCGACAGCTCAATTCGCCGAGGATTTTGGTGTATACAGCGAAAAAACAAACGAGTGGATTATCGA AGCTTCATGGCAGTCAGCATTCCAGTGTAGCGGGCCAATCGGTGCCTTCATCGGTGTGTTCATGGCAGGTCCCAT TACCAGTTGGATTGGATATCGATGGGCCACCATTGGTGGTCTCATGTTCTTGAACGGCTTCATCTTCATCTTCTT CTTCGCCAACAGCCAGGGTATGTTTTTCGCGTCCCAGATCCTGGAAGGCATCCCGTGGGGCATTTTTATCGCCAA TGCACCCGCCTACTGTGCCGAAATTGTGCCAATGAGATTGAGAGCTCCAGCGACACAGATGTTGCAAATGTTCTG GGCGGTTGGGTCGATCATAGTCGGCGGTATCACTTACCACTACCAATCCAAGAATGACTCGTCAGCGTACAGGTT CGTCCGCTCCCATAGATGCCATAGAGGAGCACTGTACTAACACTGATCCCAGAGTTCCCATTGCAATCCAGTGGA TTTTTCCTACTCCCCTCGCTATCCTACTCTTCCTCGCACCTGAATCACCCTGGTGGCTCGTACGAAAGGGCCGTC TGGCTGAGGCAGAGAAGGCCATCAAACGCCTTGGACGCGCGAGTGCAAATGATAATCCCGCTGACGCAGTCGCAA TGATGCGTCGCACGATTGAACTCGAGAAGACTGAGAAGAAGCCCAGTCTTATTGAACTGTGGAAAGGTACCGATC GCTACCGCACATTGATAGTGTGCGGTGTATACGCATCTCAGAATCTGACAGGCAATCTGATTGCCAACCAAGCGG TTTACTTTTTCAAACGTGAGTCCAGCCATTTCCTGCAGCTTCATGGCATACTAACACCAGCTCAGAGGCCGGCAT GGTAGACAACACCGCATTTGCACTTGGTCTCATCACTTCTGCCCTCCAGTGGATCATGGTCATGCTCTCTTGGAT CCTCACTACATACCTCGGCCGACGCACCATCTATGTTTATGGTCAATTCATCAACTGCGCATTCTTAGTCGCGCT CGGTATTGCGGCTTCAGTTGGCACTAGTAACGCGGCTAGCAATGCGCAAGCGTCGCTTGGCTTGATCGTCTCTGT CCTGTTCTGTTTGGGACCCGCGCCTGCCTCATGGGTTATCATCGGGGAGACATCTTCCGTTCGTCTTAGACCACT GACAACCGGTGTTGGACGAGGTGCATACTACTTGGTCAATATTCCTTGCATCTTCCTTGCCAGCTACATGCTCAA CACTGATAAGTGGAATCTGGGCGGCAAGAGCGGCTACATCTGGGCTGGTACCGCCTTTTTCTGCACTGTCATGTC TTGGATTTGGGTTCCAGAGATGAAGCACAGATCCTTCCGTGAGATTGACATTCTGTTCCGGCGCCATGTTCCGGC TCGCAAATGGAAGCAGACGGTCATCGATATCCGCGATGATGAGTAG |