© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7689.t1 |
| Gene name | |
| Location | scaffold_25:141128..142204 |
| Strand | - |
| Gene length (bp) | 1076 |
| Transcript length (bp) | 918 |
| Coding sequence length (bp) | 918 |
| Protein length (aa) | 306 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00240 | ubiquitin | Ubiquitin family | 1.5E-32 | 3 | 74 |
| PF00240 | ubiquitin | Ubiquitin family | 1.5E-32 | 79 | 150 |
| PF00240 | ubiquitin | Ubiquitin family | 1.5E-32 | 155 | 226 |
| PF00240 | ubiquitin | Ubiquitin family | 1.5E-32 | 231 | 302 |
| PF11976 | Rad60-SLD | Ubiquitin-2 like Rad60 SUMO-like | 1.6E-15 | 1 | 71 |
| PF11976 | Rad60-SLD | Ubiquitin-2 like Rad60 SUMO-like | 1.6E-15 | 77 | 147 |
| PF11976 | Rad60-SLD | Ubiquitin-2 like Rad60 SUMO-like | 1.6E-15 | 153 | 223 |
| PF11976 | Rad60-SLD | Ubiquitin-2 like Rad60 SUMO-like | 1.6E-15 | 229 | 299 |
| PF14560 | Ubiquitin_2 | Ubiquitin-like domain | 1.0E-03 | 12 | 69 |
| PF14560 | Ubiquitin_2 | Ubiquitin-like domain | 9.2E-04 | 87 | 145 |
| PF14560 | Ubiquitin_2 | Ubiquitin-like domain | 9.2E-04 | 163 | 221 |
| PF14560 | Ubiquitin_2 | Ubiquitin-like domain | 9.2E-04 | 239 | 297 |
| PF13881 | Rad60-SLD_2 | Ubiquitin-2 like Rad60 SUMO-like | 1.5E-01 | 15 | 71 |
| PF13881 | Rad60-SLD_2 | Ubiquitin-2 like Rad60 SUMO-like | 1.4E-01 | 89 | 147 |
| PF13881 | Rad60-SLD_2 | Ubiquitin-2 like Rad60 SUMO-like | 1.4E-01 | 165 | 223 |
| PF13881 | Rad60-SLD_2 | Ubiquitin-2 like Rad60 SUMO-like | 1.4E-01 | 241 | 299 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7689.t1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG GMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR GGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL RGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR LRGGQ* |
| Coding | >Pro_DTO377G3_2|g7689.t1 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACCATCGACAAT GTCAAGTCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTC GAGGACGGTCGCACACTGTCCGACTATAACATCCAGAAGGAGTCCACTCTCCATCTGGTCCTTCGCCTCCGTGGC GGTATGCAAATTTTCGTCAAGACCCTGACCGGAAAGACCATTACCCTTGAGGTTGAGTCTAGCGATACCATCGAC AACGTGAAGTCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATCTTTGCCGGCAAGCAG CTGGAGGACGGTCGTACCCTGTCTGACTATAACATCCAGAAAGAGTCCACTCTACACTTGGTCCTCCGTCTCCGT GGTGGTATGCAGATTTTCGTCAAGACACTCACCGGCAAGACTATCACACTTGAAGTCGAGTCATCCGATACTATC GATAATGTGAAGTCCAAGATTCAAGATAAGGAGGGCATTCCCCCTGACCAGCAACGTCTCATCTTTGCCGGAAAG CAGCTTGAGGATGGTCGCACACTTTCCGATTACAACATCCAGAAGGAATCCACACTCCACCTTGTCCTCCGTCTA CGTGGTGGTATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACTATCACACTAGAGGTGGAGAGCTCAGACACC ATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGTCTTATCTTCGCTGGT AAGCAGCTGGAGGATGGCCGTACTCTTTCGGACTACAACATCCAGAAGGAGAGCACTCTGCACCTGGTGTTGCGT CTGCGTGGTGGCCAGTAA |
| Transcript | >Pro_DTO377G3_2|g7689.t1 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACCATCGACAAT GTCAAGTCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTC GAGGACGGTCGCACACTGTCCGACTATAACATCCAGAAGGAGTCCACTCTCCATCTGGTCCTTCGCCTCCGTGGC GGTATGCAAATTTTCGTCAAGACCCTGACCGGAAAGACCATTACCCTTGAGGTTGAGTCTAGCGATACCATCGAC AACGTGAAGTCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATCTTTGCCGGCAAGCAG CTGGAGGACGGTCGTACCCTGTCTGACTATAACATCCAGAAAGAGTCCACTCTACACTTGGTCCTCCGTCTCCGT GGTGGTATGCAGATTTTCGTCAAGACACTCACCGGCAAGACTATCACACTTGAAGTCGAGTCATCCGATACTATC GATAATGTGAAGTCCAAGATTCAAGATAAGGAGGGCATTCCCCCTGACCAGCAACGTCTCATCTTTGCCGGAAAG CAGCTTGAGGATGGTCGCACACTTTCCGATTACAACATCCAGAAGGAATCCACACTCCACCTTGTCCTCCGTCTA CGTGGTGGTATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACTATCACACTAGAGGTGGAGAGCTCAGACACC ATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGTCTTATCTTCGCTGGT AAGCAGCTGGAGGATGGCCGTACTCTTTCGGACTACAACATCCAGAAGGAGAGCACTCTGCACCTGGTGTTGCGT CTGCGTGGTGGCCAGTAA |
| Gene | >Pro_DTO377G3_2|g7689.t1 ATGCAGATCTTCGTCAAGACTCGTACGTTCACACCCCCTTATCGAGAGATAACTGCCTGGATCCCACTGGCCCTC TCGCACTCAACTCGTGGACATCCTTGCTAACAACCCTTTGTCTATAGTCACTGGCAAGACCATCACCCTTGAGGT TGAGTCCAGCGATACCATCGACAATGTCAAGTCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCG TTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGTCGCACACTGTCCGACTATAACATCCAGAAGGAGTCCACTCT CCATCTGGTCCTTCGCCTCCGTGGCGGTATGCAAATTTGTATGTGTTGACTGCCTTCACGTCCTCGTCGTTTTCT CTCGACTAACATTTGCCACAGTCGTCAAGACCCTGACCGGAAAGACCATTACCCTTGAGGTTGAGTCTAGCGATA CCATCGACAACGTGAAGTCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATCTTTGCCG GCAAGCAGCTGGAGGACGGTCGTACCCTGTCTGACTATAACATCCAGAAAGAGTCCACTCTACACTTGGTCCTCC GTCTCCGTGGTGGTATGCAGATTTTCGTCAAGACACTCACCGGCAAGACTATCACACTTGAAGTCGAGTCATCCG ATACTATCGATAATGTGAAGTCCAAGATTCAAGATAAGGAGGGCATTCCCCCTGACCAGCAACGTCTCATCTTTG CCGGAAAGCAGCTTGAGGATGGTCGCACACTTTCCGATTACAACATCCAGAAGGAATCCACACTCCACCTTGTCC TCCGTCTACGTGGTGGTATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACTATCACACTAGAGGTGGAGAGCT CAGACACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGTCTTATCT TCGCTGGTAAGCAGCTGGAGGATGGCCGTACTCTTTCGGACTACAACATCCAGAAGGAGAGCACTCTGCACCTGG TGTTGCGTCTGCGTGGTGGCCAGTAA |