© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g768.t1 |
| Gene name | |
| Location | scaffold_01:2051972..2053819 |
| Strand | + |
| Gene length (bp) | 1847 |
| Transcript length (bp) | 1623 |
| Coding sequence length (bp) | 1623 |
| Protein length (aa) | 541 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 9.9E-128 | 43 | 492 |
| PF13520 | AA_permease_2 | Amino acid permease | 6.0E-43 | 39 | 470 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 43 | 65 | 22 |
| 2 | 72 | 94 | 22 |
| 3 | 148 | 170 | 22 |
| 4 | 177 | 199 | 22 |
| 5 | 219 | 241 | 22 |
| 6 | 265 | 287 | 22 |
| 7 | 320 | 342 | 22 |
| 8 | 362 | 384 | 22 |
| 9 | 389 | 411 | 22 |
| 10 | 432 | 454 | 22 |
| 11 | 464 | 486 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.92 | 0.30 | 3.53 |
| 5d_25C | Five days - 25 degrees Celsius | 0.82 | 0.00 | 1.65 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.89 | 0.02 | 1.76 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.42 | 0.00 | 0.91 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.79 | 0.01 | 1.57 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.57 | 0.26 | 2.89 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.120626 | no |
| 3d_25C | 7d_25C | 0.156009 | no |
| 3d_25C | 7d_15C | 0.093253 | no |
| 3d_25C | 7d_30C | 0.752899 | no |
| 3d_25C | 10d_25C | 0.018560 | yes |
| 5d_25C | 7d_25C | 0.931128 | no |
| 5d_25C | 7d_15C | 0.962303 | no |
| 5d_25C | 7d_30C | 0.244647 | no |
| 5d_25C | 10d_25C | 0.335674 | no |
| 7d_25C | 7d_15C | 0.885804 | no |
| 7d_25C | 7d_30C | 0.303848 | no |
| 7d_25C | 10d_25C | 0.265893 | no |
| 7d_15C | 7d_30C | 0.204629 | no |
| 7d_15C | 10d_25C | 0.371538 | no |
| 7d_30C | 10d_25C | 0.035881 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g768.t1 MADIEKYPAAEPSKVPDTKADDVPANPFVNADKLARRLSGRQVQMIAIGGTIGTGLFLGTGSSLSKGGPASTLIA YAICGGIVFITMLCLGEMAAFMPVAGSFCTYAGRFVDDALGFALTWNYWFNDAVSTASDIIALQLLLQYWTDHFP GWAISLIFLVVVILLNVLSVKVYGEVEYWLSLLKVITIIIFIILGIAVNCGGNTDHEYIGGKNWHKGDAPFVGGI GGFASVFVTASFAYGGTESIAITAGETKSPAKTMPKVVRNVFWRILLFYLLSILIVGLNVPYDYPGLSDGDTKTS PFTIVFQQAGSAVAGSFINAVIMTSVISAANHALFAGSRLLFTLAVDGYAPKFFGHLNRFQVPWVAVLATSVISG LCFGASYIGAGKLWSWLQNIVGVSNQLSWICIGLASLRFRSAIRAQGLEHLLPFKNWTYPYGPIFAVGLNIVLVL VQGWKCFSPHFKQVDFVSYYIEIPIMIAMFLAWKLVKRTSFVRKSSMDLMTDRYDPSQEDGYGDGPEGPVTEKKK GAWRKAQRFGQWLFF* |
| Coding | >Pro_DTO377G3_2|g768.t1 ATGGCCGACATCGAGAAATACCCGGCAGCAGAGCCCTCCAAGGTTCCAGACACAAAAGCCGATGATGTCCCGGCA AACCCATTTGTCAACGCAGACAAGCTGGCTCGCCGATTGTCTGGGCGTCAGGTGCAGATGATCGCGATTGGCGGT ACCATCGGCACCGGTCTATTCCTCGGAACGGGATCGTCACTTTCTAAGGGCGGGCCTGCTTCGACTCTCATTGCA TATGCTATTTGCGGTGGTATTGTCTTCATCACTATGCTGTGTCTCGGCGAGATGGCGGCATTTATGCCTGTTGCT GGATCTTTCTGTACTTATGCTGGTCGCTTCGTGGATGATGCGCTTGGATTCGCATTGACTTGGAATTATTGGTTT AATGATGCTGTCTCTACTGCATCGGATATCATTGCTTTACAGCTTTTGTTGCAGTATTGGACGGATCATTTCCCA GGTTGGGCAATTAGTCTAATCTTCTTGGTTGTTGTCATTTTATTGAACGTCCTATCTGTAAAGGTTTATGGCGAG GTTGAATACTGGTTGAGTTTACTCAAAGTCATCACTATCATCATCTTCATTATTCTGGGAATTGCTGTGAACTGC GGCGGAAATACAGACCACGAATATATCGGCGGCAAGAACTGGCATAAAGGCGATGCACCCTTCGTCGGTGGAATC GGTGGCTTTGCATCCGTATTTGTCACAGCCTCCTTCGCATACGGCGGCACCGAATCCATCGCCATCACAGCCGGT GAAACCAAAAGCCCCGCGAAAACAATGCCAAAAGTCGTCCGCAACGTCTTCTGGCGTATCCTTCTTTTCTACCTC CTTTCGATCCTCATCGTCGGCCTAAATGTACCGTATGACTACCCAGGCCTCTCAGACGGCGACACAAAGACCAGC CCTTTCACAATTGTCTTCCAGCAAGCTGGTTCCGCTGTCGCTGGCAGCTTCATCAACGCTGTCATCATGACTTCG GTCATCTCAGCGGCGAACCATGCCCTCTTCGCCGGATCTCGGCTTCTATTCACTCTCGCCGTCGATGGATATGCG CCCAAATTCTTCGGTCATCTCAATCGATTCCAAGTTCCGTGGGTGGCTGTCCTCGCGACATCTGTTATCAGCGGT CTCTGCTTCGGGGCCAGCTATATCGGCGCTGGAAAGTTGTGGTCCTGGCTGCAGAATATCGTCGGCGTATCAAAC CAGCTCTCGTGGATTTGTATCGGTCTTGCTTCTCTGCGGTTCCGCTCGGCGATCCGGGCTCAGGGGCTTGAGCAT CTCCTTCCCTTTAAAAATTGGACTTATCCGTATGGTCCGATCTTTGCTGTCGGGCTTAATATTGTTCTGGTTCTG GTTCAGGGGTGGAAGTGCTTCAGTCCGCATTTCAAGCAGGTCGACTTTGTTTCGTATTATATTGAGATTCCGATC ATGATTGCCATGTTCCTCGCTTGGAAGCTGGTCAAGCGAACTAGCTTTGTTAGGAAGTCTAGTATGGATTTGATG ACGGACCGATATGATCCTTCTCAGGAGGATGGGTACGGGGATGGGCCTGAGGGTCCGGTTACGGAGAAGAAGAAG GGTGCCTGGCGTAAAGCTCAACGGTTTGGGCAGTGGTTATTCTTTTAG |
| Transcript | >Pro_DTO377G3_2|g768.t1 ATGGCCGACATCGAGAAATACCCGGCAGCAGAGCCCTCCAAGGTTCCAGACACAAAAGCCGATGATGTCCCGGCA AACCCATTTGTCAACGCAGACAAGCTGGCTCGCCGATTGTCTGGGCGTCAGGTGCAGATGATCGCGATTGGCGGT ACCATCGGCACCGGTCTATTCCTCGGAACGGGATCGTCACTTTCTAAGGGCGGGCCTGCTTCGACTCTCATTGCA TATGCTATTTGCGGTGGTATTGTCTTCATCACTATGCTGTGTCTCGGCGAGATGGCGGCATTTATGCCTGTTGCT GGATCTTTCTGTACTTATGCTGGTCGCTTCGTGGATGATGCGCTTGGATTCGCATTGACTTGGAATTATTGGTTT AATGATGCTGTCTCTACTGCATCGGATATCATTGCTTTACAGCTTTTGTTGCAGTATTGGACGGATCATTTCCCA GGTTGGGCAATTAGTCTAATCTTCTTGGTTGTTGTCATTTTATTGAACGTCCTATCTGTAAAGGTTTATGGCGAG GTTGAATACTGGTTGAGTTTACTCAAAGTCATCACTATCATCATCTTCATTATTCTGGGAATTGCTGTGAACTGC GGCGGAAATACAGACCACGAATATATCGGCGGCAAGAACTGGCATAAAGGCGATGCACCCTTCGTCGGTGGAATC GGTGGCTTTGCATCCGTATTTGTCACAGCCTCCTTCGCATACGGCGGCACCGAATCCATCGCCATCACAGCCGGT GAAACCAAAAGCCCCGCGAAAACAATGCCAAAAGTCGTCCGCAACGTCTTCTGGCGTATCCTTCTTTTCTACCTC CTTTCGATCCTCATCGTCGGCCTAAATGTACCGTATGACTACCCAGGCCTCTCAGACGGCGACACAAAGACCAGC CCTTTCACAATTGTCTTCCAGCAAGCTGGTTCCGCTGTCGCTGGCAGCTTCATCAACGCTGTCATCATGACTTCG GTCATCTCAGCGGCGAACCATGCCCTCTTCGCCGGATCTCGGCTTCTATTCACTCTCGCCGTCGATGGATATGCG CCCAAATTCTTCGGTCATCTCAATCGATTCCAAGTTCCGTGGGTGGCTGTCCTCGCGACATCTGTTATCAGCGGT CTCTGCTTCGGGGCCAGCTATATCGGCGCTGGAAAGTTGTGGTCCTGGCTGCAGAATATCGTCGGCGTATCAAAC CAGCTCTCGTGGATTTGTATCGGTCTTGCTTCTCTGCGGTTCCGCTCGGCGATCCGGGCTCAGGGGCTTGAGCAT CTCCTTCCCTTTAAAAATTGGACTTATCCGTATGGTCCGATCTTTGCTGTCGGGCTTAATATTGTTCTGGTTCTG GTTCAGGGGTGGAAGTGCTTCAGTCCGCATTTCAAGCAGGTCGACTTTGTTTCGTATTATATTGAGATTCCGATC ATGATTGCCATGTTCCTCGCTTGGAAGCTGGTCAAGCGAACTAGCTTTGTTAGGAAGTCTAGTATGGATTTGATG ACGGACCGATATGATCCTTCTCAGGAGGATGGGTACGGGGATGGGCCTGAGGGTCCGGTTACGGAGAAGAAGAAG GGTGCCTGGCGTAAAGCTCAACGGTTTGGGCAGTGGTTATTCTTTTAG |
| Gene | >Pro_DTO377G3_2|g768.t1 ATGGCCGACATCGAGAAATACCCGGCAGCAGAGCCCTCCAAGGTTCCAGACACAAAAGCCGATGATGTCCCGGCA AACCCATTTGTCAACGCAGACAAGCTGGCTCGCCGATTGTCTGGGCGTCAGGTGCAGATGATCGCGATTGGCGGT ACCATCGGCACCGGTCTATTCCTCGGAACGGGATCGTCACTTTCTAAGGGCGGGCCTGCTTCGACTCTCATTGCA TATGCTATTTGCGGTGGTATTGTCTTCATCACTATGCTGTGTCTCGGCGAGATGGCGGCATTTATGCCTGTTGCT GGATCTTTCTGTACTTATGCTGGGTGAGTATTAGTTACTTGTTTTTTCAGCCGGATGATTACTAACTTGCTCTAT AGTCGCTTCGTGGATGATGCGCTTGGATTCGCATTGACTTGGAATTATTGGTTTAATGATGCTGTCTCTACTGCA TCGGATATCATTGCTTTACAGCTTTTGTTGCAGTATTGGACGGATCATTTCCCAGGTTGGGCAATTAGTCTAATC TTCTTGGTTGTTGTCATTTTATTGAACGTCCTATCTGTAAAGGTTTATGGCGAGGTATGTCTAGATGACTTACAC TCTATTACCCACCTGATCTAACTGTCCCTATCTAGGTTGAATACTGGTTGAGTTTACTCAAAGTCATCACTATCA TCGTGAGTGCTATCCCTTACACAATACGCGCACGCCCAGCTAATTATCTTTCTAGATCTTCATTATTCTGGGAAT TGCTGTGAACTGCGGCGGAAATACAGACCACGAATATATCGGCGGCAAGAACTGGCATAAAGGCGATGCACCCTT CGTCGGTGGAATCGGTGGCTTTGCATCCGTATTTGTCACAGCCTCCTTCGCATAGTATGTGAACTCATTTTATCA TTGGTTCTGCTCAATGAGCTCCATTCTAACAATCGAACAGCGGCGGCACCGAATCCATCGCCATCACAGCCGGTG AAACCAAAAGCCCCGCGAAAACAATGCCAAAAGTCGTCCGCAACGTCTTCTGGCGTATCCTTCTTTTCTACCTCC TTTCGATCCTCATCGTCGGCCTAAATGTACCGTATGACTACCCAGGCCTCTCAGACGGCGACACAAAGACCAGCC CTTTCACAATTGTCTTCCAGCAAGCTGGTTCCGCTGTCGCTGGCAGCTTCATCAACGCTGTCATCATGACTTCGG TCATCTCAGCGGCGAACCATGCCCTCTTCGCCGGATCTCGGCTTCTATTCACTCTCGCCGTCGATGGATATGCGC CCAAATTCTTCGGTCATCTCAATCGATTCCAAGTTCCGTGGGTGGCTGTCCTCGCGACATCTGTTATCAGCGGTC TCTGCTTCGGGGCCAGCTATATCGGCGCTGGAAAGTTGTGGTCCTGGCTGCAGAATATCGTCGGCGTATCAAACC AGCTCTCGTGGATTTGTATCGGTCTTGCTTCTCTGCGGTTCCGCTCGGCGATCCGGGCTCAGGGGCTTGAGCATC TCCTTCCCTTTAAAAATTGGACTTATCCGTATGGTCCGATCTTTGCTGTCGGGCTTAATATTGTTCTGGTTCTGG TTCAGGGGTGGAAGTGCTTCAGTCCGCATTTCAAGCAGGTCGACTTTGTTTCGTATTATATTGAGATTCCGATCA TGATTGCCATGTTCCTCGCTTGGAAGCTGGTCAAGCGAACTAGCTTTGTTAGGAAGTCTAGTATGGATTTGATGA CGGACCGATATGATCCTTCTCAGGAGGATGGGTACGGGGATGGGCCTGAGGGTCCGGTTACGGAGAAGAAGAAGG GTGCCTGGCGTAAAGCTCAACGGTTTGGGCAGTGGTTATTCTTTTAG |