© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g7678.t1 |
| Gene name | |
| Location | scaffold_25:98366..100300 |
| Strand | + |
| Gene length (bp) | 1934 |
| Transcript length (bp) | 1596 |
| Coding sequence length (bp) | 1596 |
| Protein length (aa) | 532 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 6.4E-58 | 82 | 501 |
| PF00324 | AA_permease | Amino acid permease | 9.3E-25 | 76 | 510 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 90 | 109 | 19 |
| 3 | 143 | 165 | 22 |
| 4 | 180 | 202 | 22 |
| 5 | 209 | 231 | 22 |
| 6 | 251 | 273 | 22 |
| 7 | 294 | 316 | 22 |
| 8 | 331 | 353 | 22 |
| 9 | 388 | 410 | 22 |
| 10 | 420 | 442 | 22 |
| 11 | 463 | 485 | 22 |
| 12 | 495 | 512 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7678.t1 MTVISRSRPDSQQTMTGLDDEEYAEKGLVEPQYMGTLADKRDMNALGRVQVLRRNFRFISIVGFGCTLICTWEVI LTLLAAGLTDGGTAGLIWGFISVTLGFTLVYASIAEMASMAPTAGGQYHWVSEFAPKRGQKYLSYITGWLSAMGW QCAIVSIAYLAGTIIQGLIVLNQPDYNFQRWHGTMLVIAISTFSILFNTFLAKNLPFVEGLILIIHVVGLFAIII PLWVLAPRNNAHAVFTTFNNGGGWDSPGTATMVGLSTTITSMLGYDCSVHMSEEIKDASETLPKAMMSSVAVNGV LGFIMLITLCFTLGEVDRVLDTPTRFPFIQIFYNTTGSIAATNAMTAVLVVTLTASTITEVATASRQLWSFARDE GLPFSSFFAYVTPGWNIPLNSVMVSLVITVLLSMINIGSEVALNAVISLTITSLLSAYIISIGCVFLKRIRGEPL PHHRWSLGKFGMAVNLGALAFLCPIFIFAFFPLSTDVTAETMNWSVAMYVGIIGSATIYYLVRGRHHFIPPVALV QRDENS* |
| Coding | >Pro_DTO377G3_2|g7678.t1 ATGACAGTCATCAGCAGATCCAGACCTGACTCACAGCAGACGATGACTGGCCTTGACGACGAGGAGTACGCGGAG AAAGGCCTTGTTGAGCCTCAGTATATGGGCACGCTGGCGGATAAGCGTGATATGAATGCTCTAGGTCGAGTGCAG GTTCTACGAAGAAACTTTCGGTTTATTTCTATTGTAGGATTTGGATGCACTTTGATCTGCACATGGGAAGTTATC TTGACATTGTTGGCGGCTGGCTTGACCGATGGGGGTACCGCGGGCTTGATATGGGGGTTCATCAGCGTCACATTG GGGTTTACACTTGTCTACGCCAGCATTGCTGAGATGGCCTCGATGGCTCCCACTGCTGGTGGACAGTACCATTGG GTGTCGGAGTTCGCACCAAAGAGAGGACAAAAATACCTCAGCTATATCACAGGATGGCTTTCTGCAATGGGGTGG CAATGCGCCATTGTATCCATCGCCTACCTTGCTGGCACAATCATTCAAGGCCTGATCGTCTTAAACCAGCCAGAC TATAACTTCCAGCGATGGCATGGCACCATGCTAGTAATTGCCATTTCGACATTCTCAATCTTATTCAACACCTTC TTAGCCAAGAATCTTCCCTTCGTGGAAGGACTGATTTTGATCATTCATGTTGTTGGTTTGTTCGCTATCATCATC CCGTTGTGGGTACTCGCACCACGCAACAATGCCCACGCAGTCTTCACCACGTTTAACAATGGGGGCGGCTGGGAT AGCCCTGGGACGGCAACAATGGTCGGCTTGTCCACTACCATAACATCCATGCTTGGTTATGATTGCTCGGTTCAT ATGTCCGAAGAAATTAAAGACGCATCAGAGACACTCCCTAAGGCAATGATGTCCTCTGTCGCCGTTAATGGCGTG TTGGGGTTCATTATGTTGATCACACTGTGCTTCACCCTAGGCGAGGTCGACAGAGTCCTCGATACCCCCACCAGA TTCCCATTTATCCAGATATTCTACAACACCACGGGTAGCATCGCCGCGACAAACGCCATGACTGCCGTGCTGGTG GTGACGCTGACCGCCAGCACAATCACCGAAGTGGCGACGGCATCGCGCCAGCTCTGGTCGTTTGCCCGGGACGAG GGGCTGCCCTTTTCGTCCTTTTTCGCATATGTCACACCAGGCTGGAACATCCCCCTCAACTCCGTGATGGTATCT CTAGTTATCACAGTACTACTATCGATGATCAACATCGGATCAGAGGTCGCCCTGAATGCCGTCATCTCGCTCACC ATCACATCCCTTTTATCCGCTTATATCATCTCGATCGGGTGCGTATTCTTAAAGCGCATTCGGGGCGAGCCGCTC CCACACCACCGGTGGTCACTTGGGAAATTTGGCATGGCAGTGAATCTTGGAGCGTTGGCGTTCCTGTGTCCGATC TTTATCTTTGCGTTTTTCCCTCTGTCGACGGATGTTACGGCTGAAACAATGAACTGGAGCGTGGCGATGTATGTT GGCATCATTGGATCTGCGACTATTTATTATTTGGTTCGGGGAAGACATCATTTTATTCCGCCTGTGGCTTTGGTC CAGCGGGATGAAAATAGTTAG |
| Transcript | >Pro_DTO377G3_2|g7678.t1 ATGACAGTCATCAGCAGATCCAGACCTGACTCACAGCAGACGATGACTGGCCTTGACGACGAGGAGTACGCGGAG AAAGGCCTTGTTGAGCCTCAGTATATGGGCACGCTGGCGGATAAGCGTGATATGAATGCTCTAGGTCGAGTGCAG GTTCTACGAAGAAACTTTCGGTTTATTTCTATTGTAGGATTTGGATGCACTTTGATCTGCACATGGGAAGTTATC TTGACATTGTTGGCGGCTGGCTTGACCGATGGGGGTACCGCGGGCTTGATATGGGGGTTCATCAGCGTCACATTG GGGTTTACACTTGTCTACGCCAGCATTGCTGAGATGGCCTCGATGGCTCCCACTGCTGGTGGACAGTACCATTGG GTGTCGGAGTTCGCACCAAAGAGAGGACAAAAATACCTCAGCTATATCACAGGATGGCTTTCTGCAATGGGGTGG CAATGCGCCATTGTATCCATCGCCTACCTTGCTGGCACAATCATTCAAGGCCTGATCGTCTTAAACCAGCCAGAC TATAACTTCCAGCGATGGCATGGCACCATGCTAGTAATTGCCATTTCGACATTCTCAATCTTATTCAACACCTTC TTAGCCAAGAATCTTCCCTTCGTGGAAGGACTGATTTTGATCATTCATGTTGTTGGTTTGTTCGCTATCATCATC CCGTTGTGGGTACTCGCACCACGCAACAATGCCCACGCAGTCTTCACCACGTTTAACAATGGGGGCGGCTGGGAT AGCCCTGGGACGGCAACAATGGTCGGCTTGTCCACTACCATAACATCCATGCTTGGTTATGATTGCTCGGTTCAT ATGTCCGAAGAAATTAAAGACGCATCAGAGACACTCCCTAAGGCAATGATGTCCTCTGTCGCCGTTAATGGCGTG TTGGGGTTCATTATGTTGATCACACTGTGCTTCACCCTAGGCGAGGTCGACAGAGTCCTCGATACCCCCACCAGA TTCCCATTTATCCAGATATTCTACAACACCACGGGTAGCATCGCCGCGACAAACGCCATGACTGCCGTGCTGGTG GTGACGCTGACCGCCAGCACAATCACCGAAGTGGCGACGGCATCGCGCCAGCTCTGGTCGTTTGCCCGGGACGAG GGGCTGCCCTTTTCGTCCTTTTTCGCATATGTCACACCAGGCTGGAACATCCCCCTCAACTCCGTGATGGTATCT CTAGTTATCACAGTACTACTATCGATGATCAACATCGGATCAGAGGTCGCCCTGAATGCCGTCATCTCGCTCACC ATCACATCCCTTTTATCCGCTTATATCATCTCGATCGGGTGCGTATTCTTAAAGCGCATTCGGGGCGAGCCGCTC CCACACCACCGGTGGTCACTTGGGAAATTTGGCATGGCAGTGAATCTTGGAGCGTTGGCGTTCCTGTGTCCGATC TTTATCTTTGCGTTTTTCCCTCTGTCGACGGATGTTACGGCTGAAACAATGAACTGGAGCGTGGCGATGTATGTT GGCATCATTGGATCTGCGACTATTTATTATTTGGTTCGGGGAAGACATCATTTTATTCCGCCTGTGGCTTTGGTC CAGCGGGATGAAAATAGTTAG |
| Gene | >Pro_DTO377G3_2|g7678.t1 ATGACAGTCATCAGCAGATCCAGACCTGACTCACAGCAGACGATGACTGGCCTTGACGACGAGGAGTACGCGGAG AAAGGCCTTGTTGAGCCTCAGTATATGGGCACGCTGGCGGATAAGCGTGATATGAATGCTCTAGGTCGAGTGCAG GTTCTACGAGTAAGTAGCTCTACTCTTTTTGTTCCGGCTGTGTTAACATCACAAAGAGAAACTTTCGGTTTATTT CTATTGTAGGATTTGGATGCACTTTGATCTGCACATGGGAAGTTATCTTGACGTATGTGCGAGTCCCTGCATATG ATAATTATGCAGACTACTGACTCCATTAATAGATTGTTGGCGGCTGGCTTGACCGATGGGGGTACCGCGGGCTTG ATATGGGGGTTCATCAGCGTCACATTGGGGTTTACACTTGTCTACGCCAGCATTGCTGAGATGGCCTCGATGTAG GTGACTGTCGGCTTGCTGCTTCTTCACAAATCACCGCTAATCAATTGATAAATAGGGCTCCCACTGCTGGTGGAC AGTACCATTGGGTGTCGGAGTTCGCACCAAAGAGAGGACAAAAATACCTCAGCTATATCACAGGTAACACAGCCA GTTCCTGTGTAAGTCTAACCAGCTAACATATCATATTATCTCAGGATGGCTTTCTGCAATGGGGTGGCAATGCGC CATTGTATCCATCGCCTACCTTGCTGGCACAATCATTCAAGGCCTGATCGTCTTAAACCAGCCAGACTATAACTT CCAGCGATGGCATGGCACCATGCTAGTAATTGCCATTTCGACATTCTCAATCTTATTCAACACCTTCTTAGCCAA GAATCTTCCCTTCGTGGAAGGACTGATTTTGATCATTCATGTTGTTGGTTTGTTCGCTATCATCATCCCGTTGTG GGTACTCGCACCACGCAACAATGCCCACGCAGTCTTCACCACGTTTAACAATGGGGGCGGCTGGGATAGCCCTGG GACGGCAACAATGGTCGGCTTGTCCACTACCATAACATCCATGCTTGGTTATGATTGCTCGGTTCATATGTGTAA GGAAGAACTCCACGAATGATCACAGACATGGTATATCATGCTGACATTCAAAAGCCGAAGAAATTAAAGACGCAT CAGAGACACTCCCTAAGGCAATGATGTCCTCTGTCGCCGTTAATGGCGTGTTGGGGTTCATTATGTTGATCACAC TGTGCTTCACCCTAGGCGAGGTCGACAGAGTCCTCGATACCCCCACCAGATTCCCATTTATCCAGATATTCTACA ACACCACGGGTAGCATCGCCGCGACAAACGCCATGACTGCCGTGCTGGTGGTGACGCTGACCGCCAGCACAATCA CCGAAGTGGCGACGGCATCGCGCCAGCTCTGGTCGTTTGCCCGGGACGAGGGGCTGCCCTTTTCGTCCTTTTTCG CATATGTAAGCCACGTCTTCTACATCCTAATAAGAGGTGTAAGTCCAGCAGTATTAACAGATAACCAGGTCACAC CAGGCTGGAACATCCCCCTCAACTCCGTGATGGTATCTCTAGTTATCACAGTACTACTATCGATGATCAACATCG GATCAGAGGTCGCCCTGAATGCCGTCATCTCGCTCACCATCACATCCCTTTTATCCGCTTATATCATCTCGATCG GGTGCGTATTCTTAAAGCGCATTCGGGGCGAGCCGCTCCCACACCACCGGTGGTCACTTGGGAAATTTGGCATGG CAGTGAATCTTGGAGCGTTGGCGTTCCTGTGTCCGATCTTTATCTTTGCGTTTTTCCCTCTGTCGACGGATGTTA CGGCTGAAACAATGAACTGGAGCGTGGCGATGTATGTTGGCATCATTGGATCTGCGACTATTTATTATTTGGTTC GGGGAAGACATCATTTTATTCCGCCTGTGGCTTTGGTCCAGCGGGATGAAAATAGTTAG |