© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7674.t1 |
| Gene name | |
| Location | scaffold_25:87863..88706 |
| Strand | + |
| Gene length (bp) | 843 |
| Transcript length (bp) | 450 |
| Coding sequence length (bp) | 450 |
| Protein length (aa) | 150 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00036 | EF-hand_1 | EF hand | 3.8E-09 | 12 | 40 |
| PF00036 | EF-hand_1 | EF hand | 1.4E-08 | 48 | 75 |
| PF00036 | EF-hand_1 | EF hand | 2.8E-09 | 85 | 112 |
| PF00036 | EF-hand_1 | EF hand | 6.8E-10 | 121 | 147 |
| PF13499 | EF-hand_7 | EF-hand domain pair | 3.3E-15 | 13 | 73 |
| PF13499 | EF-hand_7 | EF-hand domain pair | 2.5E-19 | 83 | 146 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 1.3E-12 | 25 | 75 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 4.0E-03 | 82 | 105 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 4.2E-15 | 98 | 146 |
| PF13405 | EF-hand_6 | EF-hand domain | 3.4E-08 | 13 | 41 |
| PF13405 | EF-hand_6 | EF-hand domain | 1.5E-08 | 85 | 114 |
| PF13202 | EF-hand_5 | EF hand | 4.0E-06 | 15 | 37 |
| PF13202 | EF-hand_5 | EF hand | 2.3E-04 | 49 | 73 |
| PF13202 | EF-hand_5 | EF hand | 1.5E-05 | 86 | 110 |
| PF13202 | EF-hand_5 | EF hand | 5.3E-05 | 124 | 146 |
| PF14658 | EF-hand_9 | EF-hand domain | 1.8E-09 | 16 | 75 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005509 | calcium ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 347.13 | 211.13 | 483.12 |
| 5d_25C | Five days - 25 degrees Celsius | 377.82 | 230.20 | 525.44 |
| 7d_25C | Seven days - 25 degrees Celsius | 364.76 | 221.33 | 508.19 |
| 10d_25C | Ten days - 25 degrees Celsius | 387.77 | 235.87 | 539.67 |
| 7d_15C | Seven days - 15 degrees Celsius | 468.71 | 282.37 | 655.05 |
| 7d_30C | Seven days - 30 degrees Celsius | 358.32 | 217.54 | 499.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.772954 | no |
| 3d_25C | 7d_25C | 0.876532 | no |
| 3d_25C | 7d_15C | 0.186920 | no |
| 3d_25C | 7d_30C | 0.925279 | no |
| 3d_25C | 10d_25C | 0.696530 | no |
| 5d_25C | 7d_25C | 0.916475 | no |
| 5d_25C | 7d_15C | 0.384422 | no |
| 5d_25C | 7d_30C | 0.871092 | no |
| 5d_25C | 10d_25C | 0.939615 | no |
| 7d_25C | 7d_15C | 0.294856 | no |
| 7d_25C | 7d_30C | 0.960412 | no |
| 7d_25C | 10d_25C | 0.846795 | no |
| 7d_15C | 7d_30C | 0.256593 | no |
| 7d_15C | 10d_25C | 0.463198 | no |
| 7d_30C | 10d_25C | 0.798560 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7674.t1 MADSLTEEQVSEYKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMAR KMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVDEMIREADQDGDGRIDYNEFVQLMMQK* |
| Coding | >Pro_DTO377G3_2|g7674.t1 ATGGCTGATTCCCTCACCGAAGAGCAAGTGTCTGAGTACAAGGAGGCCTTCTCCCTGTTTGACAAGGATGGCGAT GGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCTGAGTTGCAG GATATGATCAACGAGGTTGACGCCGACAACAACGGCACTATTGACTTCCCCGAATTCCTCACTATGATGGCTCGT AAGATGAAGGACACCGATTCCGAGGAGGAGATTCGCGAGGCATTCAAGGTCTTCGATCGTGATAACAACGGGTTC ATTTCCGCTGCTGAGCTTCGCCACGTCATGACCTCCATCGGCGAGAAGCTGACTGACGACGAGGTGGACGAGATG ATCCGCGAGGCGGACCAGGATGGTGATGGCCGAATCGACTACAACGAGTTCGTTCAGCTCATGATGCAAAAATAA |
| Transcript | >Pro_DTO377G3_2|g7674.t1 ATGGCTGATTCCCTCACCGAAGAGCAAGTGTCTGAGTACAAGGAGGCCTTCTCCCTGTTTGACAAGGATGGCGAT GGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCTGAGTTGCAG GATATGATCAACGAGGTTGACGCCGACAACAACGGCACTATTGACTTCCCCGAATTCCTCACTATGATGGCTCGT AAGATGAAGGACACCGATTCCGAGGAGGAGATTCGCGAGGCATTCAAGGTCTTCGATCGTGATAACAACGGGTTC ATTTCCGCTGCTGAGCTTCGCCACGTCATGACCTCCATCGGCGAGAAGCTGACTGACGACGAGGTGGACGAGATG ATCCGCGAGGCGGACCAGGATGGTGATGGCCGAATCGACTACAACGAGTTCGTTCAGCTCATGATGCAAAAATAA |
| Gene | >Pro_DTO377G3_2|g7674.t1 ATGGTATGTCCCTGATCCCCTAACTTCTCAGTTGTGTTGTCGAAAATTCAACCCCCACATTGCGGGGCATTTCAT TTGAACTTCACTGACCATCGCATTCTCCAGGCTGATTCCCTCACCGAAGAGCAAGTGTCTGAGTACAAGGAGGCC TTCTCCCTGTTTGTGAGTGACTCAACATACAGATTGAAGACTTGATAGTCGAAAATATGCTGACCGGAGTTGGTT TGATTGCGAAATAGGACAAGGATGGCGATGGTACGTGTGGTCGCGCCCGACAGCTCAGTGTCCTCTGCGATCGAA TTTCACGAGAAAAGTATTCTAACATACAATCCTACTAATAGGACAAATCACCACCAAGGAGCTTGGCACCGTCAT GCGCTCGCTGGGCCAGAACCCCTCCGAGTCTGAGTTGCAGGATATGATCAACGAGGTTGACGCCGACAACAACGG CACTATTGACTTCCCCGGTATTTGACCATAACCTCCTGGTATAAACGAGAGACGGCTACTGACGTGCGGTAGAAT TCCTCACTATGATGGCTCGTAAGATGAAGGACACCGATTCCGAGGAGGAGATTCGCGAGGCATTCAAGGTCTTCG ATCGTGATAACAACGGGTTCATTTCCGCTGCTGAGCTTCGCCACGTCATGACCTCCATCGGCGAGAAGCTGACTG ACGACGAGGTGGACGAGATGATCCGCGAGGCGGACCAGGATGGTGATGGCCGAATCGACTGTATGTTTGGAAACA ATCTTGGAGCCTACCGGCACTTGCCTGCCCAAATGCTAACCTCTCCCTCTCCATACAGACAACGAGTTCGTTCAG CTCATGATGCAAAAATAA |