© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7663.t1 |
| Gene name | |
| Location | scaffold_25:64384..65316 |
| Strand | - |
| Gene length (bp) | 932 |
| Transcript length (bp) | 777 |
| Coding sequence length (bp) | 777 |
| Protein length (aa) | 259 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01522 | Polysacc_deac_1 | Polysaccharide deacetylase | 6.0E-28 | 53 | 175 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.29 | 0.41 | 6.16 |
| 5d_25C | Five days - 25 degrees Celsius | 2.75 | 0.26 | 5.23 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.61 | 0.44 | 6.77 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.31 | 0.01 | 4.60 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.79 | 0.29 | 5.30 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.51 | 0.02 | 5.01 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.791822 | no |
| 3d_25C | 7d_25C | 0.898623 | no |
| 3d_25C | 7d_15C | 0.816853 | no |
| 3d_25C | 7d_30C | 0.694587 | no |
| 3d_25C | 10d_25C | 0.582457 | no |
| 5d_25C | 7d_25C | 0.670117 | no |
| 5d_25C | 7d_15C | 0.982983 | no |
| 5d_25C | 7d_30C | 0.913329 | no |
| 5d_25C | 10d_25C | 0.812202 | no |
| 7d_25C | 7d_15C | 0.693306 | no |
| 7d_25C | 7d_30C | 0.578877 | no |
| 7d_25C | 10d_25C | 0.470634 | no |
| 7d_15C | 7d_30C | 0.895315 | no |
| 7d_15C | 10d_25C | 0.791817 | no |
| 7d_30C | 10d_25C | 0.921188 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7663.t1 MHFLAFPISLLLSAITLSQAAPTGNSINASTTTNTTQLNASRLPSGAIITRCTIPDTIALTFDDGPYIYTSQILD TLAQRGARATFFLNGHNRGNIDASPEIVQRALAEGHQLGSHTWNHASLDTLSYEEIVYQMTILEEAFTRILGFFP TYMRPPFLRHTPVVLGAMADLGYHVIGASVDTKDYENDNPDTNWVSFEKFKREVDAGGTIVLAHDSHQHTVEILV DNMLADVQRRGLRPVPVGECLGDPSEFWYRAGR* |
| Coding | >Pro_DTO377G3_2|g7663.t1 ATGCATTTCCTTGCATTTCCAATCTCATTGCTCCTTTCAGCTATTACCCTATCCCAAGCCGCTCCCACAGGGAAC AGTATCAACGCCAGCACAACCACCAATACCACCCAGCTCAACGCTTCCAGATTACCATCCGGAGCCATTATCACC CGCTGTACCATCCCGGACACAATCGCCCTCACTTTCGACGATGGCCCGTACATCTACACATCCCAGATACTAGAT ACCCTCGCCCAACGCGGCGCAAGGGCAACCTTCTTCCTCAACGGCCATAACAGGGGAAACATCGATGCATCACCC GAGATAGTGCAGCGTGCATTGGCAGAAGGACACCAGTTGGGATCTCATACATGGAACCACGCCTCCCTCGATACC CTCTCATACGAAGAAATCGTATACCAAATGACAATCCTCGAAGAAGCCTTCACACGCATCCTAGGCTTCTTCCCG ACCTACATGCGCCCCCCGTTCCTCAGACACACGCCCGTCGTTCTCGGCGCTATGGCCGATCTGGGATACCATGTC ATTGGGGCTAGTGTTGATACAAAGGACTATGAGAATGATAATCCTGATACGAATTGGGTTAGCTTTGAAAAGTTC AAGAGGGAGGTTGATGCTGGTGGCACCATTGTGTTGGCCCATGATTCGCATCAGCATACGGTTGAGATTTTGGTG GATAATATGCTTGCGGATGTTCAGAGAAGGGGGTTGAGACCTGTTCCTGTTGGCGAGTGTCTTGGTGATCCGTCT GAGTTTTGGTATCGTGCTGGGAGGTAG |
| Transcript | >Pro_DTO377G3_2|g7663.t1 ATGCATTTCCTTGCATTTCCAATCTCATTGCTCCTTTCAGCTATTACCCTATCCCAAGCCGCTCCCACAGGGAAC AGTATCAACGCCAGCACAACCACCAATACCACCCAGCTCAACGCTTCCAGATTACCATCCGGAGCCATTATCACC CGCTGTACCATCCCGGACACAATCGCCCTCACTTTCGACGATGGCCCGTACATCTACACATCCCAGATACTAGAT ACCCTCGCCCAACGCGGCGCAAGGGCAACCTTCTTCCTCAACGGCCATAACAGGGGAAACATCGATGCATCACCC GAGATAGTGCAGCGTGCATTGGCAGAAGGACACCAGTTGGGATCTCATACATGGAACCACGCCTCCCTCGATACC CTCTCATACGAAGAAATCGTATACCAAATGACAATCCTCGAAGAAGCCTTCACACGCATCCTAGGCTTCTTCCCG ACCTACATGCGCCCCCCGTTCCTCAGACACACGCCCGTCGTTCTCGGCGCTATGGCCGATCTGGGATACCATGTC ATTGGGGCTAGTGTTGATACAAAGGACTATGAGAATGATAATCCTGATACGAATTGGGTTAGCTTTGAAAAGTTC AAGAGGGAGGTTGATGCTGGTGGCACCATTGTGTTGGCCCATGATTCGCATCAGCATACGGTTGAGATTTTGGTG GATAATATGCTTGCGGATGTTCAGAGAAGGGGGTTGAGACCTGTTCCTGTTGGCGAGTGTCTTGGTGATCCGTCT GAGTTTTGGTATCGTGCTGGGAGGTAG |
| Gene | >Pro_DTO377G3_2|g7663.t1 ATGCATTTCCTTGCATTTCCAATCTCATTGCTCCTTTCAGCTATTACCCTATCCCAAGCCGCTCCCACAGGGAAC AGTATCAACGCCAGCACAACCACCAATACCACCCAGCTCAACGCTTCCAGATTACCATCCGGAGCCATTATCACC CGCTGTACCATCCCGGACACAATCGCCCTCACTTTCGACGATGGCCCGTACATCTACACATCCCAGATACTAGAT ACCCTCGCCCAACGCGGCGCAAGGGCAACCTTCTTCCTCAACGGCCATAACAGGGGAAACATCGATGCATCACCC GAGATAGTGCAGCGTGCATTGGCAGAAGGACACCAGTTGGGATCTCATACGTTCGTTTATACCACCCACTGGCTT ACTCTCTCTTCCCCAGCCCAGCCAGTCCAAGCCCCAACATACACTTACCAAATAACCGTCCAGATGGAACCACGC CTCCCTCGATACCCTCTCATACGAAGAAATCGTATACCAAATGACAATCCTCGAAGAAGCCTTCACACGCATCCT AGGCTTCTTCCCGACCTACATGCGCCCCCCGTTCCTCAGACACACGCCCGTCGTTCTCGGCGCTATGGCCGATCT GGGATACCATGTCATTGGGGCTAGTGTTGATACAAAGGACTATGAGAATGATAATCCTGATACGAATTGGGTTAG CTTTGAAAAGTTCAAGAGGGAGGTTGATGCTGGTGGCACCATTGTGTTGGCCCATGATTCGCATCAGCATACGGT TGAGATTTTGGTGGATAATATGCTTGCGGATGTTCAGAGAAGGGGGTTGAGACGTAAGTTTTCTTTTTCCTTTGT GTTTGTCGGTGGTTATGGGGTGAGGCTAACGGGTTTCTCTTATAGCTGTTCCTGTTGGCGAGTGTCTTGGTGATC CGTCTGAGTTTTGGTATCGTGCTGGGAGGTAG |