© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7661.t1 |
| Gene name | |
| Location | scaffold_25:60829..61476 |
| Strand | - |
| Gene length (bp) | 647 |
| Transcript length (bp) | 453 |
| Coding sequence length (bp) | 453 |
| Protein length (aa) | 151 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00293 | NUDIX | NUDIX domain | 9.7E-23 | 4 | 116 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 56.44 | 25.08 | 87.80 |
| 5d_25C | Five days - 25 degrees Celsius | 66.40 | 30.56 | 102.24 |
| 7d_25C | Seven days - 25 degrees Celsius | 74.87 | 35.08 | 114.65 |
| 10d_25C | Ten days - 25 degrees Celsius | 110.00 | 57.82 | 162.19 |
| 7d_15C | Seven days - 15 degrees Celsius | 70.83 | 32.88 | 108.79 |
| 7d_30C | Seven days - 30 degrees Celsius | 61.10 | 27.17 | 95.04 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.679238 | no |
| 3d_25C | 7d_25C | 0.420149 | no |
| 3d_25C | 7d_15C | 0.538626 | no |
| 3d_25C | 7d_30C | 0.862772 | no |
| 3d_25C | 10d_25C | 0.017485 | yes |
| 5d_25C | 7d_25C | 0.769817 | no |
| 5d_25C | 7d_15C | 0.887343 | no |
| 5d_25C | 7d_30C | 0.851935 | no |
| 5d_25C | 10d_25C | 0.066960 | no |
| 7d_25C | 7d_15C | 0.906483 | no |
| 7d_25C | 7d_30C | 0.590963 | no |
| 7d_25C | 10d_25C | 0.194439 | no |
| 7d_15C | 7d_30C | 0.712434 | no |
| 7d_15C | 10d_25C | 0.125826 | no |
| 7d_30C | 10d_25C | 0.035014 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7661.t1 MDPKVGVGVFVLNAAGKFLIGKRKGSLGAGTWGLPGGHLDFGESFETCAVRETLEETGLKIQDVRFLTATNSILK AENKHYITIFMGAVCEDGAEPQVIEPDRCEGWEWISWDELRAYGEEQIKAGDGFEGRRFFSPLLGLFEQRPDFRV * |
| Coding | >Pro_DTO377G3_2|g7661.t1 ATGGACCCCAAAGTCGGAGTCGGCGTTTTTGTTCTCAATGCTGCAGGCAAATTCCTGATCGGTAAGCGAAAGGGG AGCCTTGGCGCTGGCACATGGGGACTACCAGGTGGACACCTTGATTTTGGTGAATCTTTTGAGACTTGCGCGGTC CGTGAGACTCTCGAAGAAACAGGTCTGAAGATTCAGGATGTGCGGTTCCTGACGGCCACGAATTCAATCTTGAAA GCGGAGAATAAGCACTACATTACCATTTTCATGGGTGCTGTCTGTGAGGATGGTGCTGAACCCCAGGTAATTGAG CCGGATAGGTGCGAGGGGTGGGAATGGATCTCGTGGGATGAATTGCGGGCGTATGGGGAGGAGCAAATCAAGGCT GGTGACGGGTTCGAGGGAAGAAGGTTCTTTTCGCCTCTTTTGGGATTATTTGAACAACGTCCGGATTTTCGAGTT TGA |
| Transcript | >Pro_DTO377G3_2|g7661.t1 ATGGACCCCAAAGTCGGAGTCGGCGTTTTTGTTCTCAATGCTGCAGGCAAATTCCTGATCGGTAAGCGAAAGGGG AGCCTTGGCGCTGGCACATGGGGACTACCAGGTGGACACCTTGATTTTGGTGAATCTTTTGAGACTTGCGCGGTC CGTGAGACTCTCGAAGAAACAGGTCTGAAGATTCAGGATGTGCGGTTCCTGACGGCCACGAATTCAATCTTGAAA GCGGAGAATAAGCACTACATTACCATTTTCATGGGTGCTGTCTGTGAGGATGGTGCTGAACCCCAGGTAATTGAG CCGGATAGGTGCGAGGGGTGGGAATGGATCTCGTGGGATGAATTGCGGGCGTATGGGGAGGAGCAAATCAAGGCT GGTGACGGGTTCGAGGGAAGAAGGTTCTTTTCGCCTCTTTTGGGATTATTTGAACAACGTCCGGATTTTCGAGTT TGA |
| Gene | >Pro_DTO377G3_2|g7661.t1 ATGGACCCCAAAGTCGGAGTCGGCGTTTTTGTTCTCAATGCTGCAGGCAAATTCCTGATCGGTAAGCGAAAGGGG AGCCTTGGCGCTGGTACGTGCATCCAATAGAATACTATACATGCAATAGACCTCAATTATAATCAAAGCTAACCA TTTGTGATTAAAGGCACATGGGGACTACCAGGTGGACACCTTGATTTTGGTGAATCTTTTGAGACTTGCGCGGTC CGTGAGACTCTCGAAGAAACAGGTCTGAAGATTCAGGATGTGCGGTTCCTGACGGCCACGAATTCAATCTTGAAA GCGGAGAATAAGCACTACATTACCATTTTCATGGGTGCTGTCTGTGAGGATGGTGCTGAACCCCAGGTAGGTTGA TTGAGGTTTGTTTTATGTGTTTATGTGTTTTTCTGTTTTTATATACCCCCGTCTCGTGGCTGCGTACACTGCAGG AACAGAACCAGGATACGCGGCTTACTTCTTGGTAGGTAATTGAGCCGGATAGGTGCGAGGGGTGGGAATGGATCT CGTGGGATGAATTGCGGGCGTATGGGGAGGAGCAAATCAAGGCTGGTGACGGGTTCGAGGGAAGAAGGTTCTTTT CGCCTCTTTTGGGATTATTTGAACAACGTCCGGATTTTCGAGTTTGA |