© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7659.t1 |
| Gene name | |
| Location | scaffold_25:57943..58698 |
| Strand | + |
| Gene length (bp) | 755 |
| Transcript length (bp) | 699 |
| Coding sequence length (bp) | 699 |
| Protein length (aa) | 233 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04525 | LOR | LURP-one-related | 1.7E-05 | 35 | 223 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 58 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 207 | 229 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 87.38 | 49.81 | 124.95 |
| 5d_25C | Five days - 25 degrees Celsius | 67.25 | 36.50 | 98.01 |
| 7d_25C | Seven days - 25 degrees Celsius | 42.38 | 20.63 | 64.14 |
| 10d_25C | Ten days - 25 degrees Celsius | 32.98 | 14.79 | 51.17 |
| 7d_15C | Seven days - 15 degrees Celsius | 67.36 | 35.75 | 98.97 |
| 7d_30C | Seven days - 30 degrees Celsius | 60.01 | 31.77 | 88.24 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.330971 | no |
| 3d_25C | 7d_25C | 0.003197 | yes |
| 3d_25C | 7d_15C | 0.345319 | no |
| 3d_25C | 7d_30C | 0.147227 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.085662 | no |
| 5d_25C | 7d_15C | 0.996581 | no |
| 5d_25C | 7d_30C | 0.747272 | no |
| 5d_25C | 10d_25C | 0.008469 | yes |
| 7d_25C | 7d_15C | 0.087906 | no |
| 7d_25C | 7d_30C | 0.236902 | no |
| 7d_25C | 10d_25C | 0.481668 | no |
| 7d_15C | 7d_30C | 0.742467 | no |
| 7d_15C | 10d_25C | 0.009124 | yes |
| 7d_30C | 10d_25C | 0.035243 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7659.t1 MSYTSYSDARLSRSYSSKPRKPLRSPDRDIAFRNQYIARSKTTLVLRPFGSPQSAVAYKITEEDGTPQFTVTGRK YTDRSCREFRDKSGLPLFELHRKLSWTNSWSISLPGCDTATIATGTPRWTLGNTSFGNFALSFENAAAFEGKRGD EKMLTLNIERHGNALALFDVVDGDGKVAEIRESIRHNEKLALMRGSRQGYRPAMDVIIMPGVDISLVVTIAVIVS DWVFGSS* |
| Coding | >Pro_DTO377G3_2|g7659.t1 ATGTCCTACACCTCCTACTCTGACGCTCGACTATCGCGCTCATACTCCTCTAAGCCCCGCAAACCCCTTCGATCG CCAGACCGCGATATCGCCTTCCGGAACCAATACATAGCGCGCTCAAAGACAACCCTCGTGCTCAGACCATTTGGC AGCCCCCAATCCGCCGTCGCATATAAGATCACCGAAGAGGATGGAACACCACAGTTCACGGTGACTGGTCGCAAG TACACCGATCGCTCGTGTCGGGAGTTTCGCGATAAATCGGGTCTGCCGCTCTTCGAGCTACACCGGAAATTGTCG TGGACGAATAGTTGGTCGATTAGCTTGCCAGGCTGTGATACTGCGACGATAGCTACTGGCACTCCGCGATGGACG TTGGGCAATACTTCGTTTGGGAATTTTGCTCTTTCGTTCGAAAATGCGGCTGCGTTTGAGGGAAAGCGCGGGGAT GAGAAAATGCTTACTCTGAATATTGAACGGCATGGGAATGCGCTGGCGCTTTTTGATGTCGTTGATGGGGATGGG AAGGTTGCTGAAATTCGGGAGAGTATTCGTCATAATGAGAAACTGGCTTTGATGAGAGGCTCTAGACAGGGGTAT CGACCTGCTATGGATGTCATTATAATGCCTGGAGTAGATATTTCATTGGTTGTGACTATCGCTGTTATAGTATCT GACTGGGTTTTTGGCTCGAGTTGA |
| Transcript | >Pro_DTO377G3_2|g7659.t1 ATGTCCTACACCTCCTACTCTGACGCTCGACTATCGCGCTCATACTCCTCTAAGCCCCGCAAACCCCTTCGATCG CCAGACCGCGATATCGCCTTCCGGAACCAATACATAGCGCGCTCAAAGACAACCCTCGTGCTCAGACCATTTGGC AGCCCCCAATCCGCCGTCGCATATAAGATCACCGAAGAGGATGGAACACCACAGTTCACGGTGACTGGTCGCAAG TACACCGATCGCTCGTGTCGGGAGTTTCGCGATAAATCGGGTCTGCCGCTCTTCGAGCTACACCGGAAATTGTCG TGGACGAATAGTTGGTCGATTAGCTTGCCAGGCTGTGATACTGCGACGATAGCTACTGGCACTCCGCGATGGACG TTGGGCAATACTTCGTTTGGGAATTTTGCTCTTTCGTTCGAAAATGCGGCTGCGTTTGAGGGAAAGCGCGGGGAT GAGAAAATGCTTACTCTGAATATTGAACGGCATGGGAATGCGCTGGCGCTTTTTGATGTCGTTGATGGGGATGGG AAGGTTGCTGAAATTCGGGAGAGTATTCGTCATAATGAGAAACTGGCTTTGATGAGAGGCTCTAGACAGGGGTAT CGACCTGCTATGGATGTCATTATAATGCCTGGAGTAGATATTTCATTGGTTGTGACTATCGCTGTTATAGTATCT GACTGGGTTTTTGGCTCGAGTTGA |
| Gene | >Pro_DTO377G3_2|g7659.t1 ATGTCCTACACCTCCTACTCTGACGCTCGACTATCGCGCTCATACTCCTCTAAGCCCCGCAAACCCCTTCGATCG CCAGACCGCGATATCGCCTTCCGGAACCAATACATAGCGCGCTCAAAGACAACCCTCGTGCTCAGACCATTTGGC AGCCCCCAATCCGCCGTCGCATATAAGATCACCGAAGAGGATGGAACACCACAGTTCACGGTGACTGGTCGCAAG TACACCGATCGCTCGTGTCGGGAGTTTCGCGATAAATCGGGTCTGCCGCTCTTCGAGCTACACCGGAAATTGTCG TGGACGAATAGTTGGTCGATTAGCTTGCCAGGCTGTGATACTGCGACGATAGCTACTGGCACTCCGCGATGGACG TTGGGCAATACTTCGTTTGGGAATTTTGCTCTTTCGTTCGAAAATGCGGCTGCGTTTGAGGGAAAGCGCGGGGAT GAGAAAATGCTTACTCTGAATATTGAACGGCATGGGAATGCGCTGGCGCTTTTTGATGTCGTTGATGGGGATGGG AAGGTTGCTGAAATTCGGGAGAGTATTCGTCATAATGAGAAACTGGCTTTGATGAGAGGCTCTAGACAGGGGTAT CGACCTGCTATGGATGTCATTATAATGCCTGGAGTAGATATTTCATTGGTGCGTATTCGAATCTTCAGGGCTCTT GGTGTATAGATTGACTGATATTTGTACAGGTTGTGACTATCGCTGTTATAGTATCTGACTGGGTTTTTGGCTCGA GTTGA |