© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g764.t1 |
| Gene name | |
| Location | scaffold_01:2043722..2045748 |
| Strand | + |
| Gene length (bp) | 2026 |
| Transcript length (bp) | 1806 |
| Coding sequence length (bp) | 1806 |
| Protein length (aa) | 602 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.4E-09 | 277 | 334 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.0E-08 | 365 | 425 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.09 | 0.12 | 2.07 |
| 5d_25C | Five days - 25 degrees Celsius | 1.77 | 0.37 | 3.16 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.42 | 0.21 | 2.64 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.04 | 0.12 | 1.95 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.58 | 0.65 | 4.51 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.51 | 0.86 | 6.17 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.354964 | no |
| 3d_25C | 7d_25C | 0.677768 | no |
| 3d_25C | 7d_15C | 0.057409 | no |
| 3d_25C | 7d_30C | 0.010411 | yes |
| 3d_25C | 10d_25C | 0.945148 | no |
| 5d_25C | 7d_25C | 0.729228 | no |
| 5d_25C | 7d_15C | 0.434910 | no |
| 5d_25C | 7d_30C | 0.123204 | no |
| 5d_25C | 10d_25C | 0.305203 | no |
| 7d_25C | 7d_15C | 0.203310 | no |
| 7d_25C | 7d_30C | 0.047696 | yes |
| 7d_25C | 10d_25C | 0.605611 | no |
| 7d_15C | 7d_30C | 0.539713 | no |
| 7d_15C | 10d_25C | 0.047323 | yes |
| 7d_30C | 10d_25C | 0.007437 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g764.t1 MHPQGSQHTSSSGSGSCQTSSSQSAQYPQEPRTPYGPRYHQSTNPSSIDSSGAGLTNLFRGLNLQNSRPKFNGSK GTAPVQMNTNMDWSNTNRAYNSPFILVPNSTVFNGVPTVSSFVPNGVSGQTDQMGQFSYLPTGVYPNVNPVMAGG YSSWPYMMNYDMQDGTTNKQAWVSEGQKGVQGENNGQINYYPSALVSGMDGSSMSGYSYGGMVPSQLGSLSLPLQ MMKTPNGYVVQDLEALTQQDPAIPRAVPAMWTNPSELTLAKCLENREGITNVYIRGFLPETTDEMLHAYAARFGK IERCKAIVDLDTSLCKGFGFVQYYSFESCENCIRGFFYLGYQASFAQKSRNSRLKDLEDKSSTNIYCTNIPIDWT EADLRRHFEPWRVVSEKISRDEKTGVSKEVGFARFENRDVAEKVLMEFHNVTKDDGVKLLLRFADTKAQKILKQQ SNERRAYRAGEYNYSVEVVQGSTPSPGMKRGSHLTPNSQVSYTSPAGVGANWTPATSISPCHPHMKNPSSSARSS SLSSRSLNALDHTPAYRSRALSLNRGSYTDLSGGSSKTAMPDSPTMGSRKENIRAGSVSPASSSPMIILSPARSC T* |
| Coding | >Pro_DTO377G3_2|g764.t1 ATGCACCCTCAGGGCTCTCAACACACAAGCTCCTCTGGTTCTGGCTCTTGTCAGACATCAAGCTCCCAGTCTGCA CAATACCCCCAAGAGCCTCGTACACCCTATGGTCCCAGGTACCACCAATCTACCAATCCGAGTTCTATTGACAGC AGTGGTGCAGGCCTGACCAATCTTTTCAGAGGATTAAATCTGCAGAACTCTCGTCCCAAATTCAACGGCTCAAAG GGCACCGCACCCGTTCAAATGAACACAAACATGGACTGGTCGAATACCAACCGTGCATACAACAGCCCATTCATC CTGGTTCCGAATTCCACCGTTTTCAATGGCGTTCCGACCGTCTCTTCCTTTGTTCCTAACGGTGTCTCTGGTCAG ACTGATCAGATGGGCCAATTCTCGTATCTTCCAACGGGAGTCTACCCCAACGTCAATCCTGTGATGGCTGGTGGA TACTCGTCGTGGCCCTACATGATGAACTACGACATGCAGGATGGGACGACCAACAAGCAAGCATGGGTGTCTGAG GGCCAGAAGGGAGTTCAGGGGGAGAACAATGGACAAATAAATTACTATCCCTCTGCTCTTGTTTCTGGCATGGAT GGCAGTTCCATGTCTGGTTACTCTTATGGAGGCATGGTTCCCTCGCAGCTTGGGTCGCTCTCGCTTCCCCTCCAA ATGATGAAGACTCCCAACGGTTACGTCGTTCAAGATCTGGAGGCTCTAACTCAACAAGATCCTGCCATCCCACGC GCGGTGCCTGCCATGTGGACTAACCCGTCTGAGCTGACACTCGCCAAGTGTCTGGAAAATCGCGAGGGTATAACC AATGTCTACATCCGAGGATTCCTGCCCGAGACCACTGATGAGATGTTGCATGCCTACGCAGCTCGTTTCGGAAAG ATTGAGCGTTGCAAGGCCATCGTGGACCTGGATACCAGTCTTTGCAAAGGATTCGGTTTTGTTCAGTATTACAGC TTCGAATCCTGCGAGAACTGCATTCGCGGTTTCTTTTACCTCGGCTACCAAGCCAGCTTCGCCCAGAAGTCTCGC AACTCTCGCCTGAAGGATCTGGAGGACAAGTCTTCTACCAATATATACTGCACCAACATTCCAATCGATTGGACT GAAGCCGACCTGCGTCGTCATTTCGAGCCATGGCGTGTGGTTTCGGAAAAGATCAGTCGCGATGAGAAGACAGGT GTGAGCAAGGAAGTGGGCTTTGCACGCTTCGAAAACCGTGATGTTGCCGAAAAGGTCCTGATGGAATTCCACAAC GTCACCAAGGACGATGGGGTAAAGCTGCTTCTGCGCTTTGCTGATACCAAAGCGCAAAAGATCCTGAAGCAACAG AGCAACGAACGTCGTGCTTACCGCGCCGGAGAATATAACTACTCGGTTGAAGTGGTTCAGGGATCTACTCCATCC CCTGGGATGAAACGTGGCTCTCATCTTACTCCAAACTCTCAAGTCAGCTATACCTCTCCAGCTGGTGTGGGCGCT AACTGGACCCCGGCAACTTCCATCTCCCCTTGTCACCCGCACATGAAGAATCCATCCAGCAGTGCACGAAGCAGT TCCTTGTCGTCTCGGAGCCTCAATGCTCTTGACCACACGCCCGCCTATCGCAGTCGAGCCTTGTCCCTGAACCGC GGCTCTTACACTGATCTCTCTGGTGGTTCTTCCAAGACCGCCATGCCGGACTCGCCGACTATGGGGTCTCGTAAA GAGAACATCAGAGCGGGCTCTGTATCCCCCGCTTCTTCTTCTCCCATGATCATTCTCTCCCCAGCTCGCTCGTGC ACTTAA |
| Transcript | >Pro_DTO377G3_2|g764.t1 ATGCACCCTCAGGGCTCTCAACACACAAGCTCCTCTGGTTCTGGCTCTTGTCAGACATCAAGCTCCCAGTCTGCA CAATACCCCCAAGAGCCTCGTACACCCTATGGTCCCAGGTACCACCAATCTACCAATCCGAGTTCTATTGACAGC AGTGGTGCAGGCCTGACCAATCTTTTCAGAGGATTAAATCTGCAGAACTCTCGTCCCAAATTCAACGGCTCAAAG GGCACCGCACCCGTTCAAATGAACACAAACATGGACTGGTCGAATACCAACCGTGCATACAACAGCCCATTCATC CTGGTTCCGAATTCCACCGTTTTCAATGGCGTTCCGACCGTCTCTTCCTTTGTTCCTAACGGTGTCTCTGGTCAG ACTGATCAGATGGGCCAATTCTCGTATCTTCCAACGGGAGTCTACCCCAACGTCAATCCTGTGATGGCTGGTGGA TACTCGTCGTGGCCCTACATGATGAACTACGACATGCAGGATGGGACGACCAACAAGCAAGCATGGGTGTCTGAG GGCCAGAAGGGAGTTCAGGGGGAGAACAATGGACAAATAAATTACTATCCCTCTGCTCTTGTTTCTGGCATGGAT GGCAGTTCCATGTCTGGTTACTCTTATGGAGGCATGGTTCCCTCGCAGCTTGGGTCGCTCTCGCTTCCCCTCCAA ATGATGAAGACTCCCAACGGTTACGTCGTTCAAGATCTGGAGGCTCTAACTCAACAAGATCCTGCCATCCCACGC GCGGTGCCTGCCATGTGGACTAACCCGTCTGAGCTGACACTCGCCAAGTGTCTGGAAAATCGCGAGGGTATAACC AATGTCTACATCCGAGGATTCCTGCCCGAGACCACTGATGAGATGTTGCATGCCTACGCAGCTCGTTTCGGAAAG ATTGAGCGTTGCAAGGCCATCGTGGACCTGGATACCAGTCTTTGCAAAGGATTCGGTTTTGTTCAGTATTACAGC TTCGAATCCTGCGAGAACTGCATTCGCGGTTTCTTTTACCTCGGCTACCAAGCCAGCTTCGCCCAGAAGTCTCGC AACTCTCGCCTGAAGGATCTGGAGGACAAGTCTTCTACCAATATATACTGCACCAACATTCCAATCGATTGGACT GAAGCCGACCTGCGTCGTCATTTCGAGCCATGGCGTGTGGTTTCGGAAAAGATCAGTCGCGATGAGAAGACAGGT GTGAGCAAGGAAGTGGGCTTTGCACGCTTCGAAAACCGTGATGTTGCCGAAAAGGTCCTGATGGAATTCCACAAC GTCACCAAGGACGATGGGGTAAAGCTGCTTCTGCGCTTTGCTGATACCAAAGCGCAAAAGATCCTGAAGCAACAG AGCAACGAACGTCGTGCTTACCGCGCCGGAGAATATAACTACTCGGTTGAAGTGGTTCAGGGATCTACTCCATCC CCTGGGATGAAACGTGGCTCTCATCTTACTCCAAACTCTCAAGTCAGCTATACCTCTCCAGCTGGTGTGGGCGCT AACTGGACCCCGGCAACTTCCATCTCCCCTTGTCACCCGCACATGAAGAATCCATCCAGCAGTGCACGAAGCAGT TCCTTGTCGTCTCGGAGCCTCAATGCTCTTGACCACACGCCCGCCTATCGCAGTCGAGCCTTGTCCCTGAACCGC GGCTCTTACACTGATCTCTCTGGTGGTTCTTCCAAGACCGCCATGCCGGACTCGCCGACTATGGGGTCTCGTAAA GAGAACATCAGAGCGGGCTCTGTATCCCCCGCTTCTTCTTCTCCCATGATCATTCTCTCCCCAGCTCGCTCGTGC ACTTAA |
| Gene | >Pro_DTO377G3_2|g764.t1 ATGCACCCTCAGGGCTCTCAACACACAAGCTCCTCTGGTTCTGGCTCTTGTCAGACATCAAGCTCCCAGTCTGCA CAATACCCCCAAGAGCCTCGTACACCCTATGGTCCCAGGTACCACCAATCTACCAATCCGAGTTCTATTGACAGC AGTGGTGCAGGCCTGACCAATCTTTTCAGAGGATTAAATCTGCAGAACTCTCGTCCCAAATTCAACGGCTCAAAG GGCACCGCACCCGTTCAAATGAACACAAACATGGACTGGTCGAATACCAACCGTGCATACAACAGCCCATTCATC CTGGTTCCGAATTCCACCGTTTTCAATGGCGTTCCGACCGTCTCTTCCTTTGTTCCTAACGGTGTCTCTGGTCAG ACTGATCAGATGGGCCAATTCTCGTATCTTCCAACGGGAGTCTACCCCAACGTCAATCCTGTGATGGCTGGTGGA TACTCGTCGTGGCCCTACATGATGAACTACGACATGCAGGATGGGACGACCAACAAGCAAGCATGGGTGTCTGAG GGCCAGAAGGGAGTTCAGGGGGAGAACAATGGACAAATAAATTACTATCCCTCTGCTCTTGTTTCTGGCATGGAT GGCAGTTCCATGTCTGGTTACTCTTATGGAGGCATGGTTCCCTCGCAGCTTGGGTCGCTCTCGCTTCCCCTCCAA ATGATGAAGACTCCCAACGGTTACGTCGTTCAAGATCTGGAGGCTCTAACTCAACAAGATCCTGCCATCCCACGC GCGGTGCCTGCCATGTGGACTAACCCGTCTGAGCTGACACTCGCCAAGTGTCTGGAAAATCGCGAGGGTATAACC AATGTCTACATCCGAGGATTCCTGCCCGAGACCACTGATGAGATGTTGCATGCCTACGCAGCTCGTTTCGGAAAG ATTGAGCGTTGCAAGGCCATCGTGGACCTGGATACCAGTCTTTGCAAAGGGTACCTACTCCACAAAACTTCTTTC CGATAATTTATTCTAATCTTTTGCAGATTCGGTTTTGTTCAGTATTACAGCTTCGAATCCTGCGAGAACTGCATT CGCGGTTTCTTTTACCTCGGCTACCAAGCCAGCTTCGCCCAGAAGTCTCGCAACTCTCGCCTGAAGGATCTGGAG GACAAGTCTTCTACCAATATATACTGCACCAACATTCCAATCGATTGGACTGAAGCCGTGAGTTATACAAACCCC CACACGCTTGTCTGTCCTGTTGAATTCTAATTAGTTTATCAGGACCTGCGTCGTCATTTCGAGCCATGGCGTGTG GTTTCGGAAAAGATCAGTCGCGATGAGAAGACAGGTGTGAGCAAGGAAGTGGGCTTTGCACGGTAAAAAAGCAAA TTCCTTCCTTGACTCTCATGACCTTTTCTGACTGGTTTACAGCTTCGAAAACCGTGATGTTGCCGAAAAGGTCCT GATGGAATTCCACAACGTCACCAAGGACGATGGGGTAAAGCTGCTTCTGCGCTTTGCTGATACCAAAGCGCAAAA GATCCTGAAGCAACAGAGCAACGAACGTCGTGCTTACCGCGCCGGAGAATATAACTACTCGGTTGAAGTGGTTCA GGGATCTACTCCATCCCCTGGGATGAAACGTGGCTCTCATCTTACTCCAAACTCTCAAGTCAGCTATACCTCTCC AGCTGGTGTGGGCGCTAACTGGACCCCGGCAACTTCCATCTCCCCTTGGTATGTCTAAATACTTGAACTGCATTC CAAAACTCATTCTAATCGAGCTCACAGTCACCCGCACATGAAGAATCCATCCAGCAGTGCACGAAGCAGTTCCTT GTCGTCTCGGAGCCTCAATGCTCTTGACCACACGCCCGCCTATCGCAGTCGAGCCTTGTCCCTGAACCGCGGCTC TTACACTGATCTCTCTGGTGGTTCTTCCAAGACCGCCATGCCGGACTCGCCGACTATGGGGTCTCGTAAAGAGAA CATCAGAGCGGGCTCTGTATCCCCCGCTTCTTCTTCTCCCATGATCATTCTCTCCCCAGCTCGCTCGTGCACTTA A |